Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                  ---------------------               ----------->HVH21                                                --------->ANAC58            <---------ANAC46                                                  ---------->DOF2            <---------ANAC58                                            --------->AHL20(2)            <---------ANAC58                                            <---------AHL20(2)         ---------->ID1                                              --------->YAB1        <-------GAMYB   <---------ANAC46                             <---------ICU4      <---------ATHB12       <---------MYB46(3)                                            <--------HAHB4 --------->ANAC58       <-----------RAV1(1)         ----------->GT1                   --------->ATHB51<---------ATHB12    ------------>MYB.PH3(2)       --------->DAG2                    --------->ICU4  --------->ANAC58  <---------TOE2(3) --------->At5g28300     <----------DOF2         --------->AHL20(2) --------->WOX13(1) ---------->DOF2  <---------DEAR3(1)      <---------YAB1          --------->YAB1--------->ANAC58 --------YAB1  --------->WRKY12 ---------->DOF2                 <---------TOE2(3)  --------->WOX13(1) ---At4g35610<----------DOF2--------->HSFB2a(2)         <---------AHL20(2)  --------->YAB1--------->YAB1 -TGA1 --------->MYB52(2)   <---------HSFB2a(2)        --------->AHL20(2)--------->WOX13(1)   tattaaagtttgttgctttgacggtgacttatggaaaaggttttatctttgtgtaaatttaaaattaagaataattaatcaaaagcaatcaatcaaaatc  26492600                                                                                                    <                                                                                                    <                                                                                                    <                                                              --------->ARR14(2)                    -         <-----------GT1                                 --------->YAB1                             <     --------->MYB52(2)               <--------P   ------>MYB83                             ---------     <---------MYB46(3)      --------->YAB1        ------>MYB46(1)              --------->YAB1  <----   <---------MYB52(1)       <---------YAB1       <---------MYB59       <--------P     <------ZmHOX2a(1) --->ANAC81 ------->GAMYB <----------DOF2       --------->DEAR3(2) <---------AtLEC2 <---------TOE2(3)   aattcgtttgttaactgtccgattccaactttgataactggtaagtccgaaccgaacaattacaaatttgcaggtaagagaagaataaggaacaagattg  26492700                                                                                           <---------YAB1 ---------WRKY38(1)                                                                   --------->ATHB12 ---------ETT(2)                                          --------->ARR14(2)          <---------ICU4 ---------WRKY12     <------MYB46(1)                      <---------ARR14(2)          --------->YAB1 -------->ETT(2)     <------MYB83                       --------->ANAC46              <--------HAHB4 ---------DEAR3(1) <--------P     ---------->DOF2       --------->ANAC58             --------->ICU4 >ATHB12    ----------->HVH21 ----------->HVH21         --------->ANAC58 ---------->ID1 <---------YAB1 -----MYB46(3) <---------ANAC46 <<<<<<<GRF7     --------->At4g35610 <----------DOF2  <---------YAB1   ggtcgacgaagaagacgacgggttggctatacctgacaaagcatactatctgatgcccacgatactctccctttcttcgttttcttcatcattactattt  26492800                                                          --------->GLK1(2)                                                         <---------GLK1(2)                                                 <---------DAG2                                                 <----------DOF2 --------->ANAC46                                             --------->MYB46(3)  --------->ANAC58         --------->AtMYB61                                         <---------MYB52(2)      --------->ANAC58         <---------MYB59                                       <-----------GT1   --------->ARR14(2)<---------GLK1(1)------>MYB83                             ---------->DOF2-------->P   <---------ARR14(2)--------->GLK1(1)------>MYB46(1)   ctcttacaaaaattcaatcgcaaactctttctaaagtctattcactaaccactttctcagattctatacgaaacgagaaatcagatgttagaccaaactc  26492900                                            <---------ANAC55(2)                                            --------->ANAC55(2)                                           <-------TEIL                                         <---------ARR14(2)                                         --------->ARR14(2)                                      <---------------------WRI1                                      <------NtERF2                                     ------>NtERF2                                     <---------RAP2.3(1)                                    <---------At1g77200                                    <---------DEAR3(1)                                   <------NtERF2                                   --------->ATERF1(1)                                  <-----------HVH21                                                <-                                  <---------ATERF1(1)                                              <-               --------->CCA1(2) <---------DEAR3(1)                                             <----              <---------ARR14(2) <---------ANAC46                                            --------              --------->ARR14(2) <---------ANAC58       <-----------RAV1(1)             --------->TOE1(3)      ---------->DOF2 --------->YAB1--------->DEAR3(1)  <---------ANAC46                --------->TOE2(3)   --------->YAB1<---------YAB1  <---------ANAC58<---------ANAC46              ----------->GT1-------   gacaatgagaaagacagatatgaataagaagagaggcgtcggcgatacgttttgtgttctgtgggagagatagaacagagagagagaaaaccctaaccac  26493000                                                               <---------WOX13(1)         <---------DAG2                                       <------------CBF         *TSS               ----------->GT1                  --------->ATHB12                <------- ---------DOF2            --------->ZAT14                   <---------YAB1               <---------YAB1 --------DAG2        --------------->AGL15                 <------NtERF2                 <---------AHL20(2) -----ALFIN1     <----------DOF2   --------->AHL20(2)     --------->At4g35610      <---------MYB52(1) ->MYB46(3)   <-----------GT1      <---------AHL20(2)     <---------At4g35610   <---------ATHB12 >GAMYB  <----------DOF2 --------->ALFIN1                <---------DEAR3(1)  ------>ZmHOX2a(1)  <----   actttttatgactttttgactttcccagtggagaaaaataaatactatcaaatagagaggcgctgattggctcccattcctaatcgttttttttattact  26493100                                                             <---------ANAC58                                                             <---------ANAC55(2)                     --------->YAB1                          <---------ANAC46                    <---------ATHB12                         <---------bZIP60(2)                 <---------ALFIN1                            --------->ANAC55(2)                 --------->AtMYB61                           <---------ANAC55(1)                --------->MYB46(3)    <-----------GT1        <---------ANAC58       --------->AHL20(2)             --------->YAB1      <---------MYB52(1)     <----------DOF2       <---------AHL20(2)   <----------DOF2            <---------TOE1(3)    <-----------GT1      --------->AHL20(2)<---------GLK1(2)<---------ICU4<---------TOE2(3)<---------YAB1 ----GT1      <-----------GT1      <---------ICU4     <-----------GT1 <---------AHL20(2) ------DOF2   --------->ANAC46--------->AHL20(2)  <----------DOF2    <---------AHL20(2)             -   ttcaccgatttaatttccaccactcatattcttttaatattcacaattactccttttaacgttacgtgttttttatttttacgctttcatttttgaattt  26493200                                     ----------->GT1                                --------->ALFIN1                                <---------ANAC46                              <---------ANAC58                              ------>ZmHOX2a(2)                 --------->AtLEC2  ----------->GT1                 --------->ANAC58  <---------ANAC46           <---------AHL20(2)                 --------->ANAC58 --------->ALFIN1           --------->YAB1             ========================HOX2a_HOX2a            <---------YAB1             =======================HOX2a_HOX2a          <---------YAB1       <---------AHL20(2)    <------ZmHOX2a(2)         --------->YAB1      <---------ATHB12      --------->ARR11(3)         ----------->GT1           <-----------GT1      --------->AHL20(2)    <---------ARR11(3)        <---------ATHB12   --------->YAB1 ------>TEIL <------ZmHOX2a(1)<---------ANAC58--------->AHL20(2)      <------NtERF2                --   tgaatctaataaataggacatgcaagttgagatcgtgtggggaaaaaaaaaaatcaatggttattataaggccgagtataatataactaaatgggttaac  26493300                                                                             <---------AHL20(2)                                                                            <---------AHL20(1)                                                              --------->AHL20(2)                                                              <---------AHL20(2)                                                            <---------AHL20(2)                          <---------YAB1                    ----------->TBP --------->YAB1   --------                        --------->YAB1                      --------->AHL20(2)              *TSS                       <---------ATHB12          ---------->DOF2----------->TBP       --------->At5g28300                       --------->ICU4          --------->LBD16----------->TBP--------->AHL20(2)                   ------------>CBF        -------->P     --------->AHL20(2)--------->AHL20(2)                 --------->ZAT18       --------->ANAC46   ----------->TBP  <---------ATHB12 <--------            ---------->DOF2            --------->ANAC58   <---------AHL20(2)<---------AHL20(2) -------->DOF2   <---------ZAT18       --------->ANAC58 ----------->TBP------------>CBF    <---------AHL20(2)   ttaaggcaaattactaaagtccacaatgatgtttagtctgaacgcaacccgtagagctatatatatatataagcccaataaaattagcagtaatttaaag  26493400                                                     <---------ARR14(2)                                                  <------NtERF2                                                 --------->LBD16                                                <---------ATERF1(2)                                                <---------DEAR3(1)                                                --------->ATERF1(2)                                       <---------DOF5.7(2)                                      <---------WRKY38(1)                                      <---------WRKY45                                      <-------TEIL                                      <---------WRKY12                               --------->AtLEC2                                     --------->WRKY18(1)<-----------GT1      <---------ANAC58                                    <--------ZAP1------>NtERF2               --------->ANAC55(2)                            --------->YAB1     <---------ANAC58              <---------ANAC55(2)    -                       --------->AHL20(1)      <---------ANAC58              <---------ANAC58    <---                       --------->ARR11(3)      <---------LBD16           <----------DOF2  --------->ARR14(2)      ---------->ID1   <---------AHL20(1)  <---------ANAC58     <---------------AtSPL8    <---------GLK1(2) -->DOF2               <---------ARR11(3)  <---------ANAC58  --------->AtLEC2--------->ANAC46<------- -AHL20(2)       ----------->GT1    <-----------HVH21--------->ARR14(2)  <---------DAG2   <---------ARR14(2)   cccatcttggcccaatagatagtaaaatattcgtaatcggtcaacgcttgccggcgatttgccatacaagtacaactttacgtagccatacagattcacc  26493500  Previous    Next  AGI:  At5g66270.1    Description:  zinc finger (CCCH-type) family protein. similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT3G51180.1); similar to hypothetical protein [Thellungiella halophila] (GB:ABB45847.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) Range:  from: 26490459    to: 26493009    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g66280.1    Description:  GMD1 (GDP-D-MANNOSE 4,6-DEHYDRATASE 1); GDP-mannose 4,6-dehydratase. Identical to GDP-mannose 4,6 dehydratase 1 (GMD1) [Arabidopsis Thaliana] (GB:Q9SNY3); similar to MUR1 (MURUS 1) [Arabidopsis thaliana] (TAIR:AT3G51160.1); similar to hypothetical protein [Thellungiella halophila] (GB:ABB45857.1); similar to unknown [Populus trichocarpa] (GB:ABK94951.1); similar to unknown [Populus trichocarpa] (GB:ABK94703.1); contains InterPro domain GDP-mannose 4,6-dehydratase; (InterPro:IPR006368); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040) Range:  from: 26493392    to: 26494980    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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