Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                   ------>MYB46(1)    --------->ZAT18                                              ------>MYB83    --------->ZAT14                                            --------->AtMYB61                    -    <---------ZAT18                                   ------->TEIL                                  < ---------DOF2                                        --------->ARR14(2)                            < --->ZmHOX2a(2)                                      <---------CCA1(2)                              < ---ZmHOX2a(2)            --------------------->WRI1 <---------GLK1(2) <---------At4g35610          - ---->ARR11(3)     <--------P                      ------>ZmHOX2a(1)   --------->At4g35610          - -----ARR11(3) <-----------RAV1(2)      <---------GLK1(1)  --------->MYB46(3)                     ---   tctttgtgaactcagacacaggtaagttcccagatagtttcgaaatcccagtcctgaatctcccaccaatctcagcgaaatcgttcttaatcccagcgat  26380300                                                       --------->At4g35610                                                  <---------LBD16                                                  ================================HOX2a_HOX2a                                                  ------>ZmHOX2a(2)                --------->LBD16                  =================================HOX2a_HOX2a               --------->HSFB2a(2)               --------->ARR14(1)             ------>ZmHOX2a(1)                   --------->CCA1(2)             =================HOX2a_HOX2a        <------ZmHOX2a(2)       <---------At4g35610                      <---------ARR11(3)       --------->At4g35610                      --------->ARR11(1)    ==========================HOX2a_HOX2a       <---------ARR14(3)    ------>ZmHOX2a(1)                           --------->ARR14(3)  ==================HOX2a_HOX2a                 --------->ARR11(3)  ------>ZmHOX2a(2)                             --------->ARR14(2) ===================HOX2a_HOX2a                 <---------ARR14(2)               ------->TEIL      <- <------ZmHOX2a(2)                             <---------GLK1(1)           <------ZmHOX2a(1)       <- -------->ARR11(3)                            ----------->ARR10 --------->HSFB2a(1)       ----------- ---------GLK1(2)      <---------LBD16     ------>ZmHOX2a(1)    <---------HSFB2a(1)       <---------- ---------ARR14(2)     ===========================HOX2a_HOX2a   --------->HSFC1(2)      --------->ANAC58 ---------ARR11(3)     ------>ZmHOX2a(2)   ==============HOX2a_HOX2a <---------ANAC58   --------->ANAC46 -------->AGP1<---------LBD16              =============HOX2a_HOX2a  <---------ANAC58   --------->ANAC58 -------->ARR14(2)  --------->ATHB12     ----------->RAV1(2)    <---------HSFC1(2)    <---------ALFIN1 -------->ARR10<---------HSFB2a(2)<---------GLK1(1) --------->LBD16  <---------ANAC46 --------->REM1(1)   tagatcctcatcttcctccggatgatcgggagtttgatttctctcctgaagatccggagatgaagaaggttgcgagaggaacgaagctacaccccaaaat  26380400                                                                                  <---------At4g35610                                                                                  <-------GAMYB                                                                                 --------->MYB55(2)         <---------ARR14(3)                  <---------O2                        <---------MYB46(3) -         <---------ARR11(3)                  --------->O2              --------->GLK1(2)       <-----         --------->ARR11(3)                  <---------ANAC46         <---------ARR14(2)    <--------         --------->ARR14(3)        --------->TOE2(3)                  <---------GLK1(2)    <---------At4g35610 --------ANAC58                    --------->TOE1(3)       <---------ARR14(2)  <---------At4g35610 <- --------ANAC58      <---------ZAT18    --------->ANAC46   --------->ARR14(2) ------>NtERF2--------->At4g35610 ------>AGL3         --------->ZAT18------>ZmHOX2a(1)  --------->At5g28300   <---------DEAR3(1)<----- -------AGL3    <--------P   --------->ARR11(3)       ----------->GT1 --------->ARR14(2) <-----------RAV1(2)   tgggttctcaaggtcttggtaagttcgctaatgtcttccttaacgcctcgtggagactgtgaatccgatacagattccgacggctgttgattcagatgct  26380500                                                          --------->ANAC46                                                          --------->ANAC58                                                          ------>MYB46(1)                                                          ------>MYB83                                                       --------->MYB46(3)                                                  --------->STY1(2)                                                  <---------At4g35610                                               ------>ZmHOX2a(2)                                             <---------ARR14(2) <---------ARR14(2)                                             <---------AGP1     <---------ARR11(3)                             <---------ANAC58--------->ARR11(3) --------->ARR14(2) -------->YAB1               <---------ANAC46------->TEIL --------->ANAC58 ----ANAC58                  <---------ANAC58--------->ARR14(2)<---------CCA1(2)              ------- -GLK1(2)        =====================================HOX2a_HOX2a     ------->TEIL            ------- --------YAB1    ------>ZmHOX2a(1)  --------->ZAT18  --------->MYB52(1)                       ------- ----ANAC58<---------At4g35610      <---------ZAT18<---------MYB52(2)<---------GLK1(2)     <-------TEIL   tatcatcatcttcatcttcctcatcgagcttgagtgagttcgctatggatctagctaaccaagccatatctgaatctctctctcacacacacatacacac  26380600              <----------DOF2       --------->YAB1       ------>ZmHOX2a(2)    --------->At4g35610      <------ZmHOX2a(2)  --------->At4g35610                                           <---------AHL20(2)   <---------ANAC58      <---------At4g35610                                           --------->AHL20(2)   <---------ANAC58  <-----------GT1                                                  *TSS -->ANAC58   ------>ZmHOX2a(2)      <---------ATHB12                           --------->ARR11(3)   < -->ANAC58 <---------ARR11(3) --------->ANAC58              <---------GLK1(1)  <---------ARR11(3)  -- -->ANAC46 --------->ARR11(3) --------->ANAC58       --------->ARR11(3)   <---------ATHB12  <--------   aagttgcgatcgtgatctttttgttacagcagaagcaaatcaaacttgagagatagataatgaaatctccgtctaaatcaatatctaatttaaatattgt  26380700                                                                            ------->TEIL                                                                      <-----------GT1                                                                   <---------ICU4                                                                  <---------ARR11(3)          <---------ANAC55(2)                                     --------->AHL20(2) <----------DOF2                          --------->ANAC58        --------->AHL20(1) ---------ICU4                            --------->ANAC46        <---------AHL20(1) ------->ICU4           ------------>CBF  --------->ANAC58    <<<<<<<<<WRKY18   ----------->GT1 ----CBF  --------->ANAC55(2)        ---------->DOF2 <------------CBF<---------YAB1   aatctttatcttacttaatagcttaatccaatttagagccaaagacgacattttgtattgactgtcaaaatattactggacctggataatagcccatata  26380800                                                                                         <------MYB46(1)                                                                                         <------MYB83                                                                                        --------->MYB59                                                                                     <---------GLK1(2)                                                                                     <---------ARR14(2)                                                                                     --------->ARR14(2)                                            <---------AHL20(2)                     --------->LBD16                                        <---------AHL20(2)                        --------------->AGL15                                        --------->AHL20(2)                        --------->HSFB2a(2)                                       --------->ICU4                             <---------HSFB2a(2)                                  --------->LBD16                                 <---------------AGL15                                 <---------HSFB2a(2)                             <-----------------AGL3                                 --------->HSFB2a(2)                             ----------------->AGL3                            ------>ZmHOX2a(1)          <---------AHL20(2)        ----------------->AGL1                          ----------------->AGL1  --------->AHL20(2)             ----------------->AG                          <-----------------AGL1  <---------AHL20(1)             <-----------------AGL1                  <---------YAB1<---------LBD16   <---------AHL20(2)             <-----------------AGL2                  <---------TOE2(3)    <---------AHL20(2)<-----------GT1         ----------------->AGL2   <---------MYB52(2)  <---------At4g35610  --------->AHL20(2)                   <-----------------AG   gttcaactaaggcccatcttaagatagctcctattcgggaaattatttatattttattttttctaacttgagacaaattgttttccagatttggtaactg  26380900                                                                                     <---------YAB1               --------->LBD16                                                    --------->GLK1(2)              <---------HSFB2a(2)      --------->bZIP60(1)                       --------->ARR14(2)              --------->HSFB2a(2)      <---------bZIP60(1)                       <---------ARR14(2)           <-----------GT1             --------->TGA2(1)                         <---------GLK1(2)  -       <---------AHL20(2)              <---------TGA2(1)                       ----------->ARR10 <---       --------->AHL20(2)           ----------->HVH21                   --------->CCA1(2)       <----    <---------ARR11(3)        --------->TGA1a --------->ANAC58         <---------ARR11(3)       -----    --------->ARR11(3)<---------ARR11(3)      --------->ANAC58         --------->ARR11(3)    --------   tgtttagattttatttccagacaagagctctcacatcagtgacatcacactcactgatacaatgtttccaagagatatgttcagattctcatagccaatt  26381000     --------->MYB52(1) --------->AHL20(2) -------->AHL20(2)       <---------ZAT18                       <----------DOF2 ------AHL20(2)          <---------ZAT14                   <----------DOF2 -----AHL20(2)           --------->ZAT14              --------->YAB1 ---->AHL20(2)           --------->ZAT18  --------->YAB1   ------>ZmHOX2a(1)               <---------ZAT18 ->WOX13(1)        --------->MYB52(1)    <-------TEIL<---------ATHB12                      --------->ZAT14   aaataaaaaacagagataaacaaacagtgaactgttgaaacgattcataagtcaaatcatcctttcttttcaattgttcattcatttacacagtgcatac  26381100                                                                 --------->ARR14(2)                                                                 <---------ARR11(1)                                                                 <---------ARR14(2)                                                                <---------CCA1(2)                                                           ------>MYB83                                                <---------ARR14(2)                                                --------->ARR14(2)                    --------->AHL20(2)  --------->ANAC46   ------>MYB46(1)            ------->TEIL            <-----------GT1       <---------ALFIN1           <---------AtLEC2        <-----------GT1       --------->MYB46(3)      ------>ZmHOX2a(1)      --------->AtMYB61       <----------DOF2   --------->GLK1(2)<---------ARR11(3)             -----   aaatcagaccaatgcatgttcaaaaaataagacttttattcccctccacaaatctgaaacccacccatatctgttttctaatcctactgttctatcaaga  26381200  Previous    Next  AGI:  At5g65910.1    Description:  BSD domain-containing protein. similar to BSD domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G49800.1); similar to hypothetical protein OsI_019892 [Oryza sativa (indica cultivar-group)] (GB:EAY98659.1); contains InterPro domain BSD (InterPro:IPR005607) Range:  from: 26378666    to: 26380686    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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