Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100       --------->YAB1    <---------YAB1 -----TEIL                         <---------ANAC58 --------GT1         --------->ZAT6<---------ANAC58          ---------->DOF2                 <------- -->ANAC46    <---------GLK1(2)   ---------->ID1       ----------->GT1                 <----------DOF2   tacattatcagactcaaattctcacactcattttttggcttaatttgtacagaagaaatgtattaaagcttcttcaatctccataaacccttttgtgcat  25970700                                              --------->HSFB2a(2)                          <---------ALFIN1                                              <---------HSFB2a(2)                       --------->AtMYB61                                        --------->ARR11(3)                             --------->MYB46(3)                                        <---------ARR11(3)              <---------WRKY12<---------ALFIN1                   <-----------GT1 --------->AHL20(2)                   <---------WRKY45--------->DEAR3(1)       <---------ZAT6              <---------AHL20(2)             --------->CCA1(2)  --------->AtMYB61       ----------->GT1            <---------AHL20(1)       --------->ANAC58         --------->MYB46(3)    <------ZmHOX2a(1)             --------->AHL20(1)       --------->ANAC58         <---------MYB55(2) <-----------RAV1(2)              <---------AHL20(2)<---------ANAC58    <---------WRKY38(1)--------->AtMYB61 --ZAT18   <-----------GT1        --------->AHL20(2)<---------ANAC58   --------->WRKY18(1)--------->MYB46(3)   ttcacaggagtgttaacaatttcactggtctgcaaataaaattatcttatggaagcttgagaggcaagagatggtcaactagtcaaaccaccaccactct  25970800                           <---------AHL20(1)                           <---------ICU4                           --------->AHL20(2)                           --------->YAB1                           <---------AHL20(2)                                           <---------ANAC58                           <--------ATHB1                                               <---------ANAC58                          --------->ICU4           <---------MYB46(3)           <-------MYC3   <-----                          <---------YAB1          <--------P      --------->ALFIN1      <---------ANAC46              ---------->DOF2<---------YAB1 --------->GLK1(2) ------->GAMYB  ----------->RAV1(1) <---------CCA1(2)      --------->YAB1  <------ZmHOX2a(1)  ----------->RAV1(1)  ------->MYC3<--------   ctcatctctgtcttcttaaagttcgataataatttttggagaggagactctggttgttcatcaacagagtggtcatgagccacatgtattgcttgtgtat  25970900                         <---------ANAC58                         <---------ANAC46                         <---------ANAC58                                                        ----                        ---------->ID1            <---------At4g35610              --------->ARR11(3)                    <---------DAG2                --------->At4g35610              <---------AHL20(2)                    <----------DOF2        --------->ZAT14                         <---------AHL20(1)                <------ZmHOX2a(1)      <---------ICU4                              --------->AHL20(1) ----ZAT14    --------->MYB59         <---------YAB1        --------->ZAT14       --------->ICU4<---- -ANAC46    --------->ICU4   --------->AHL20(2)   <---------ZAT2   <---------CCA1(2)   <---------YAB1   agagagatttagaaattaggaactttttcgtataaatatactcattgtactcagctactcactagactcatctctgttttagtaatattttgaatactgt  25971000          <---------AHL20(2)          --------->AHL20(2)      --------->AHL20(1)      <---------AHL20(1)                                               --------->YAB1      --------->AHL20(2)                                  <-----------GT1      <---------AHL20(2)                             <---------YAB1   *TSS     <---------AHL20(2)                       <---------YAB1--------------->AtSPL8       --------->TOE2(3)     --------->AHL20(2)                       --------->ICU4--------->ZAT6       ----------->GT1   <- --->TEIL--------->AHL20(2)   --------->TOE2(3)     <---------GLK1(2)--------->AHL20(2)  --------->TOE1(3) -----CCA1(2) --------->TOE2(3)        ---------->DOF2 --------->TOE2(3)      <----------DOF2      <-   atctcaaataaattaatcttatcaaatagaaaccatagttgaaaagtcatgaatgattcttaactgtacaaaataataagctttggtaaaaccctaaact  25971100                                                      --------->ETT(1)                                                   <------MYB83                                                   <------MYB46(1)                                                  --------->MYB59                                                  <---------AtMYB61                                            ---------->DOF2                                          --------->LBD16                                         <---------HSFC1(1)                                         <---------HSFB2a(2)                                   --------------->AGL15                                   <---------------AGL15                                  ----------------->AGL2                                  ----------------->AG<---------DEAR3(1)           <-------TEIL           ----------------->AGL3             --------->ZAT2 <---------ICU4 --------ANAC58                   ----------------->AGL1<------NtERF2<---------At4g35610 --------ANAC58       <---------GLK1(2)  --------->HSFB2a(2)      ------>ZmHOX2a(2) --------->ATHB12-   ttcgtttccaagatgcaatttctagcttctctcgtttccaattccagaaagtttggtcggagatgggatcgagctctctcgttgcatcatttctcttcga  25971200        --------->ZAT2                                                --------->ANAC58        --------->At4g35610                                           --------->ANAC58        <---------ZAT2         --------->MYB52(2)           --------->LBD16                    ------    ------>NtERF2             <-------TEIL                 <---------HSFB2a(2)                 ------   --------->REM1(1)          --------->SPL7               --------->HSFC1(1)              --------->DOF5.7(2) ----------->RAV1(1) --------->ARR14(2)                    <---------HSFC1(1)            <---------ANAC58 -------->ANAC46     <---------ARR14(2)    <---------LBD16 --------->HSFB2a(2)           <---------ANAC58   atgcgacaccagcttcgatatcaaatccagcgttcgtcgagtttctcagggacaatgggttccagaaacctctagcaattgccatcgcaatgcgttaccc  25971300                                                                                      --------->LBD16                                                                                    ------>ZmHOX2a(2)                                                                                    <---------LBD16                                                                                   ==================                                                                             --------->GLK1(1)                                                                          --------->LBD16                                                                         --------->HSFB2a(2)                                                                       ==============================                                                                       <------ZmHOX2a(2)                                                                      --------->ARR11(3)                                                                      --------->ARR14(2)                                                                      --------->AGP1=================                                                                      <---------ARR11(3)  <-------TEIL                                                               --------->GLK1(1)   <------ZmHOX2a(2)           --------->HSFB2a(2)                                <---------ARR14(2)  <---------ARR14(2) --------->TOE2(3)      <-----------HVH21         <---------At5g28300 <---------ARR14(2)<---------TCP16(1) --------->TOE1(3)-------->P                     <-----------GT1  ----------------->AGL2--------->ARR14(2) --->TOE1(3)    --------->MYB46(3)     ----------->GT1    <-----------GT1<---------HSFB2a(2)    ----- --->TOE2(3)  <<<<<<<ZML2 <---------WRKY12  ---------->DOF2   --------->ARR14(2)  --------->ARR14(2)   taacctcaaatccctagaacaacctcggtcagtgattcaaatgcttaaaagttacagtttttccgatacccagatccagaaatcgatccgggtccatcct  25971400                         --------->GLK1(2)                       --------->HSFB2a(1)                       <---------HSFB2a(1)                   ----------->GT1                      --------->CCA1(2)         <---------HSFB2a(2)--------->HSFB2a(2)        --------->ARR11(3)         --------->HSFB2a(2)<---------HSFC1(1)         --------->AHL20(1)  --------->YAB1 ----------->GT1                       <---------ARR11(3) ==HOX2a_HOX2a  --------->ALFIN1                    <---------TOE2(3)                      <---------CCA1(2) ==HOX2a_HOX2a <-------MYC3 <---------HSFB2a(2)    ---------->DOF2                      <-------TEIL ==HOX2a_HOX2a ------->MYC3 --------->HSFC1(1)  <----------DOF2             ----------------------->TaNAC69(2) ->ZmHOX2a(1) <---------ANAC46 <<<<<<<ZML2  <---------GLK1(2)    <-----------GT1   <--------P   cgaatgatgttctacaacgtggagaaaattctagaacccaaacttcgattctttaaagatattggatttactggctctggtcttggtaagttcgtctctc  25971500                                                                                                   --                                                                                                   <-                                                     <---------GLK1(2)                         <-----                <---------REM1(1)               <---------MYB52(1)                            ------>ZmHOX2a(1)              <------MYB46(1)                  <-------GAMYB                               ------>MYB46(1)              <------MYB83                  ------>MYB83           <-----------RAV1(1)     ------>MYB83             <---------AtMYB61              ------>MYB46(1)        <---------MYB46(3)  --------->ARR11(3)            <---------MYB52(1)              -------->P--------->GLK1(2)                <---------ARR11(3)          --------->MYB55(2)               ------>ZmHOX2a(1)       --------->MYB52(2)  --------->ARR14(3)          <---------MYB46(3)    --------->ARR11(3) ----------->ARR10                   <---------ARR14(3)   aaaactcatcagtcgttggtgtaagtctagtgaagaaattgattcctaccgttgagattctgaaatcgattgttgccccaaaacatgaagaccttcctgt  25971600  Previous    Next  AGI:  At5g64940.1    Description:  ATATH13 (ABC2 homolog 13). similar to ABC1 family protein [Arabidopsis thaliana] (TAIR:AT3G07700.1); similar to ABC1 family protein [Arabidopsis thaliana] (TAIR:AT3G07700.2); similar to unknown [Picea sitchensis] (GB:ABK25165.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71779.1); similar to hypothetical protein OsI_007628 [Oryza sativa (indica cultivar-group)] (GB:EAY86395.1); contains InterPro domain ABC-1 (InterPro:IPR004147); contains InterPro domain Protein kinase-like (InterPro:IPR011009) Range:  from: 25966199    to: 25971048    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g64950.1    Description:  mitochondrial transcription termination factor-related / mTERF-related. similar to mitochondrial transcription termination factor family protein / mTERF family protein [Arabidopsis thaliana] (TAIR:AT5G07900.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71777.1); contains InterPro domain Mitochodrial transcription termination factor-related (InterPro:IPR003690) Range:  from: 25971070    to: 25972386    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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