Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                              ---------                              <---------HSFB2a(1)                                           <--------        <---------At4g35610  --------->ARR14(2)                                            --------->ICU4   --------->GLK1(1)         --------->ARR11(3)                                  --------->YAB1------   <---------GLK1(1)         <---------ARR11(3)                                <---------ARR11(3) -----ETT(1)                 <---------ARR14(2)                                --------->ARR11(3) ------>HVH21               <---------GLK1(1)                      --------->GLK1(2)--------->MYB52(1) --DOF2 --------->At4g35610 --------->GLK1(1)                     --------->YAB1<---------YAB1<------   gaccgatttccgatgaattctattcactggaaatcttcgactgattcaacgaattcaaatttcaacaagaatcagtcgaaatatcataacagaataatga  25378600           --------->At4g35610                                             --------->CCA1(2)   --------->ANAC55(2)                                                    <---------ARR11(3)   <---------ANAC55(2)                                                    --------->ARR11(1)   <---------ANAC58 --------->DAG2                                 --------->CCA1(2)   <---------ANAC58---------->DOF2                                 <------ZmHOX2a(2) >YAB1   --------->YAB1                                           <---------ARR11(3) -ICU4  --------->ICU4                                            --------->ARR11(3)            ----- --->YAB1<---------ICU4                                           --------->ARR14(2)       ---------- ----ID1<---------ATHB12                <---------TOE2(3)         <---------ARR14(2)      <----------ID1   caaatgcgtaatcatcagacaaaaagtcgcaaattgacatttaagttaacttcatacacatagttgaagatccaaagatttgaagtttgaatgcgataaa  25378700                                                                               --------->ARR14(1)                                                                              <---------ARR11(3)                                                                              <---------GLK1(2)                                                                              <---------ARR14(2)                                                                              --------->ARR11(3)                                                                              --------->ARR14(2)                                                         ----------->GT1      --------->ARR11(1)                                                        <---------AHL20(2)  --------->ICU4                                                   <---------ARR11(3)       ----------->ARR10                                                   --------->ARR11(3)    --------->WRKY18(1)                                                  --------->YAB1 <---------At5g28300              <-- ----->DOF2                                     <---------WOX13(1)      <--------ZAP1       --------- ->GT1                   <-----------GT1     <---------YAB1     <-----------GT1--------->CCA1(2) ----   aagaattgagtcttaaaactcttaatttgacattctacgttttaaacatgaatgatatttagttatttaccctcggtcaagatttgctaactatttgtaa  25378800                                 <---------AHL20(2)          <---------ZAT14                       <-                              <---------ICU4                --------->ALFIN1                    -----                           --------->YAB1               <---------ANAC58                       <----- -------ICU4            --------->WOX13(1)     <---------ANAC55(2)                            ------- -->GT1               <---------YAB1 <---------AHL20(2) <---------ANAC58                      <------ ----->ICU4   --------->GLK1(2)  --------->AHL20(2) --------->CCA1(2)               <------------CBF   aaatttcaaacttaagaatcgaacatcattcaaaattatataatgtgttacgagagatgcgagtggagagacaacttcagggtctaaattgcaaatttta  25378900                                        <----------DOF2                                        ========================================bZIP_DOF                                   <-----------GT1                                  <---------YAB1          <---------DAG2        -------->ATHB1                              *TSS   --------->YAB1         <---------ANAC58       --------->YAB1                        <---------TGA1a              --     <------------CBF           <--------HAHB4                        =====================bZIP_DOF--   --------->AHL20(1)           --------->ATHB51                      ===============================   --------->ARR11(3)           <---------ICU4                        --------->TGA1a       --------- --------ICU4                  <---------ATHB51                <---------GLK1(2)<----------DOF2    -- ---->YAB1<----------DOF2      --------->ICU4                <---------YAB1 ---------->ID1 ---------- ----YAB1<---------ANAC58      <---------ATHB12          <----------DOF2  <-----------RAV1(1)  ------ -->AHL20(2)                 --------->WOX13(1)          =======================bZIP_DOF ---------->DOF2 ---AHL20(2)               ------------>CBF          <---------GLK1(2)==============================bZIP_DOF   ataagtatattgctttttgaaactaaactatcaattattacacttttgagacacagtttctttctgattctcacttgtgtcgcttttataaaaaagataa  25379000                                                     --------->ATHB12 ------->ANAC58                                     <---------YAB1 ------->ANAC58                                  <----------DOF2 =====bZIP_DOF                                  <---------DAG2                                     -- -->GT1                                     <-----------GT1  ------>ZmHOX2a(2)             ---------- ------->ANAC46                          --------------->AtSPL8          <-------GAMYB --------->GLK1(1) ->GT1 --------->ATHB12<---------At4g35610<----------DOF2  --------->ARR11(3)          <---------GLK1(1) ---->DOF2      <---------YAB1         <-----------GT1     <---------ARR11(3)      <---------TOE2(3)   aacgcaaattgatttcttcttattctgcttcggtcttcgtttttctttacccttttgatttgatcttctcttctcggttgaaattagggatttctgtaaa  25379100                                                          ------>MYB83                                                          ------>MYB46(1)                           <                                                         ------>MYB46(1)             ------>ZmHOX2a(1)                                                         ------>MYB83=======================HOX2a_HOX2a                                                         --------->MYB52(1)     ------>ZmHOX2a(2)   <                                                       <---------MYB59        <---------ARR14(2)   --                                                       --------->MYB46(3)     --------->ARR11(3)   --                                                      --------->ANAC58======================HOX2a_HOX2a                                                      --------->ANAC58------>ZmHOX2a(2)        ------                                                     ------->TEIL    <------ZmHOX2a(2)        <------                                        --------->HSFB2a(1)         --------->ARR14(2)       --------                             --------->ANAC58<---------ETT(1)  --------->ARR14(2)    ================                             --------->ANAC58----------->HVH21 <---------ARR14(2)    ================                     <---------ICU4     <---------HSFC1(2)--------->MYB52(1)  <---------ARR11(3) <--- ------->YAB1        --------->YAB1     <---------HSFB2a(1) ------->GAMYB     --------->ARR14(2)<---- ->GT1              <---------ATHB12    --------->HSFC1(2)-------->P<---------ARR14(2)       <-------   attgtaatgtgtttctgagtaaatcatgagcaagcccgaagaaacttccgacccgaacccaaccggacccgatccgtctcgatcttcctccgatgaggtc  25379200              <------ZmHOX2a(2)          <------NtERF2         ------>NtERF2        <---------DEAR3(1)        --------->DEAR3(1)       --------->ATERF1(1)      <-----------HVH21      <---------ATERF1(1)     --------->DEAR3(1) -----------TGA1 -----------HVH21      <-----------HVH21 ------->ANAC46       <---------ANAC46 ------->DEAR3(1)    <------NtERF2 ----->HVH21 --------->ARR14(2)       <---------ANAC55(2) -----HVH21--------->DEAR3(1) ------>ZmHOX2a(2) ->bZIP60(1) <---------ARR14(2)       --------->ANAC55(2) ====================HOX2a_HOX2a    --------->YAB1--------->At4g35610                             --- =====================HOX2a_HOX2a  <---------ATHB12                                               --- ------At5g28300    <---------ATERF1(1)         <------ZmHOX2a(1)      --------->ALFIN1           <-- -----WRKY38(1)------>ZmHOX2a(2) --------->WOX13(1)                 <------ZmHOX2a(1)        -------- --bZIP60(1)<---------SPL7    =========================HOX2a_HOX2a<---------TOE2(3)     --------->TOE1(2)   accgtcaccgtcgccgatcgggctccgtctgatctcaatcacgtttctgaggagctaagtgatcaattgaggaatgtgggtttggatgattctgcgaaag  25379300                                                                      ---------->DOF2                                                                    --------->YAB1     <---------ZAT14                                           <------NtERF2 <------ZmHOX2a(1)    <---------ZAT6                        <---------ARR14(2)   <---------At4g35610  <---------ANAC46                        --------->ARR14(2)   --------->At4g35610 ------>ZAT2                              <---------GLK1(2)  <---------DEAR3(1) ------>At4g35610                    --------->MYB52(1)     <---------At4g35610  >>>>>>>>>TBF1 -------At4g35610              <---------REM1(1)     --------->ICU4<------ZmHOX2a(2) -->DOF2 <---------YAB1        ----------->GT1    --------->ZAT18  =================HOX2a_HOX2a   agctgagtgttccgattagtgtccctcaaggtaatgtagaaacggattcgagggcattattcggcagcgatcaaaaggaggaagaagaagggagcgagaa  25379400                                                                           --------->ANAC55(2)              ------->TEIL                                                 <---------ANAC55(2)              <---------ARR14(2)                                           --------->ANAC55(1)              --------->ARR14(2)                                          <---------LBD16             <---------CCA1(2)                                          <---------ARR14(2)           <---------ANAC46             <---------HSFB2a(1)             --------->ARR14(2)     <---------YAB1                     --------->KAN4(1)        <---------At4g35610     --------->ICU4                     <---------MYB46(3)       --------->ZAT2                 -----   --------->YAB1                    <------ZmHOX2a(1)           --------->At4g35610          -------  --------->ICU4                  <---------At4g35610            <---------ZAT2<------ZmHOX2a(2)<----   gagaatgatgatggtgtatccagtgagacctgattcagaggattgttcgttttatatgagaactggaagctgcaaatacggatcaagttgcaagttcaat  25379500  Previous    Next  AGI:  At5g63260.1    Description:  zinc finger (CCCH-type) family protein. Identical to Zinc finger CCCH domain-containing protein ZFN-like 5 [Arabidopsis Thaliana] (GB:Q5RJC5;GB:Q9FMJ7); similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT3G48440.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64177.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) Range:  from: 25378976    to: 25381940    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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