Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                             --------->MYB46(3)           -------->P                  <---------ATHB12    --------->GLK1(2)                --------->WOX13(1)    --------->ARR14(2)             <---------ATHB12    <---------ARR14(2)           ------>MYB83 -------->YAB1             --------->MYB46(3) -----------GT1    --------->ICU4------>MYB46(1)                                <---------YAB1     <- ------CCA1(2)----------->GT1  --------->AtMYB61                   ---------->DOF2    <----------DOF2   tatcacaatctgcaacctgtaaatattcaaacaccaaatcaatgaacaaacaattcattcccaaaaccaaaaagactcaatttttattctttccttcaac  25319300                                                                                   <---------GLK1(1)                                                                                   --------->GLK1(1)                                                                       --------->ALFIN1                --------->ANAC58             --------->ARR14(2)      <---------ANAC58                --------->ANAC58             <---------ARR14(2)      <---------ANAC58            --------->At4g35610              <---------GLK1(2)       <---------ANAC46            <---------At4g35610          <---------LBD16             <---------ANAC55(2)          <--------P              --------->TOE2(3)               --------->ARR14(2)       <---------YAB1             --------->TOE1(3)          ----------->GT1    <---------TOE2(3)       <---------TOE2(3)         ----------->RAV1(2)---------->DOF2 <-------TEIL<---------TOE1(3) --------MYB52(1)              <-----------GT1<---------GLK1(1)   <---------ARR14(2)            -----   agtttggctatggtagctaagccatggactattttacctgaactctggattttccaaagtgagtggcaaatacgtggagattagggtttccattctcact  25319400                                                     <------MYB83                --------->ANAC58                   <---------ANAC58                --------->ANAC58                   <---------ANAC58             --------->ZAT2                  --------->ZAT6          --------->LBD16                  >>>>>>>>>>>>>>>>>LFY                                    <-         --------->HSFB2a(2)          <-----------ARR10                                        ------         <---------HSFB2a(2)       ------>ZmHOX2a(2) <------MYB46(1)                           <-----    <---------ATHB12   --------->YAB1 --------->ARR14(2)                                       <-----   <-----------ARR10  <---------ATHB12<---------ARR14(2)            <---------ARR11(3)   <-----------ARR10   <---------ARR14(2)<---------ARR14(2)   <-----------GT1    --------->At4g35610        <---------MYB52(1)   --------->ARR14(2)--------->ARR14(2)<----------TaMYB80    <---------At4g35610       --------->At5g28300 ------>HVH21<---------ZAT2       <------ZmHOX2a(2)<---------ANAC46 --------->ARR11(3)--------->ANAC46   gacccaatcttcccgagctcgccaatcttcagtgagatcggatattaccactggctggttcttagctaagtatctctctgcaaaatcgccgtaactcagc  25319500                                                                                                   <-                                                                                                 <---                                                                                            ---------                                                                                   <---------GLK1(1)       <---------ATHB12                                                            <---------HSFB2a(1)   <---------YAB1                                                                 --------->GLK1(2)<- <-----------GT1                                                                  <---------ARR14(2)< ---------DOF2                                                                    <-----------ARR10<- --->At4g35610                            <---------TOE2(2)          <---------At4g35610  <------ZmHOX2a(2) ----At4g35610                            <---------TOE1(2)  ------>ZmHOX2a(2)    --------->ARR14(2)- ----ZAT2<---------GLK1(2)    --------->GLK1(2)             <---------At4g35610  <---------GLK1(2)<--   tctttaccattgattctctcaatttgacctataatctgtattcccatgtttctctcaatttgatctgcttcttctgagagtgagaatctccgatcaaagt  25319600                                                                                      <---------ANAC46                                                                                     <------NtERF2                                                                                    <---------ERF1                                                                                    <---------ORA47(2)                                                                                    <---------DEAR4(2)                                                                                    ------>NtERF2   -                                 --------->At4g35610                                <---------RAP2.3(1)                               --------->SPL7                                      <---------DEAR3(1)          ---------->DOF2     ------>NtERF2                                        <---------RAP2.3(2)     --------->DAG2          ------>NtERF2                                         <---------RAP2.6(2)    ---------->DOF2          --------->LBD16                                       <---------RRTF1(3) --------->LBD16            --------->DEAR3(1)                                     <---------RAP2.3(3) --------LBD16    --------->CCA1(2)                                               <XXXXXXXXXXXXXXXXXX ------DEAR3(1)  --------->ARR14(2)                                           ---------->DOF2     <-- ->DOF2  <---------REM1(1) <---------LBD16                                   <---------AHL20(2)   --- --------ANAC46  --------->ARR11(3)    --------->ANAC58                  ------>ZmHOX2a(1)  <-------- ---------ATERF1(2)     <---------At4g35610                             <---------MYB59     <-------- -----NtERF2 <---------At4g35610 <---------At4g35610                    ============================= -------->ATERF1(2)     <---------GLK1(1)---------->DOF2                ----------------->AGL3  <---- -------RAP2.3(1)<---------ARR14(2)    --------->ANAC58               *TSS   --------->AHL20(2) <----   cgccggtaaagttgaagcagatatagagctccggccgatgaacgaaagagactctctaactcacctagagacttcctaattaaaggcggcgtttaaggtc  25319700                                                                                              <------MYB46(1)                                                                                              <------MYB83                                                                                             <-------                                                                                            <--------P                                                                                          --------->ALFIN1                                                                                        --------->TGA1a                                                                                        <---------ANAC58                                                                                        <---------ANAC55(1)                                                                                        <---------ANAC58                                                                                        =============MYC_MYB                               --------->ANAC46                                         --------->ANAC55(2)                              --------->SPL7                --------->ANAC58            <---------TGA1a                             <<<<<<<<<SPL5                  --------->O2                <---------ANAC46        ----------->GT1   <---------------AtSPL8            --------->ANAC58            <---------bZIP60(2) ------>GAMYB             <---------------AtSPL3   <---------ICU4   <---------ANAC46    --------->O2 XXMIR4228      --------->ANAC58      <-----------TBP <-----------GT1                   <---------O2 -------At4g35610      <---------AHL20(2)          <--------HAHB4   <---------bZIP60(2) <---------ANAC55(2) ------>At4g35610------------>CBF  <-----------------AGL3   <---------O2               ----------->STF1 -TOE1(3)       --------->ANAC58   ----------------->AGL3   --------->ANAC46    --------->MYB52(1) -TOE2(3)----------->GT1 <------------CBF          --------->ATHB51 <---------ANAC58  <---------TGA2(2) ====================================================MADS_MADS      <---------ANAC58 ----------->HVH21 -----WRKY38(1)--------->DAG2<<<<<<<<<SPL1        --------->ICU4 ----------->HVH21   ----------->TGA1 -----WRKY12  ---------->DOF2<<<<<<<<<SPL4        <---------YAB1 ----------->TGA1   <-----------HVH21   aactcacagaaggttaaaaagcaatgtaattgtacggcccatttataggcccattattacccacgtagtgacgtagatgatcaaacggtgacgtgttggt  25319800                                                                      <-----------GT1                                                        --------->ANAC58                      <---------YAB1                   --------->DAG2<---------ICU4                    --------->YAB1         ------>ZmHOX2a(2)      <---------ICU4    <---------ANAC58                   <---------ATHB12       --------->GLK1(1)      --------->ICU4  ------->MYC3                   <---------ATHB51      <---------ARR11(3)    --------->YAB1    <-------MYC3                 --------->WOX13(1)    ------>ZmHOX2a(1)--------->ANAC58--------->ZAT6             -- --AtMYB61  --------->MYB59 <---------AHL20(2)        ---------->DOF2--------->YAB1 <---------ANAC58   ctccgaatgggaattgggtcaattatgtttttaatggtgtcctgatctctctagggaaaagccagtcaaaattatcacttccatatgcgtttttagagtt  25319900                                                                          --------->ANAC46          -                               ----------->HVH21                  <---------AHL20(2)                <                             <---------ANAC58                     --------->AHL20(2)              ---                      <---------AHL20(2)                          --------->AHL20(1)            <----         <-----------GT1     <---------ANAC58        <---------ICU4<---------AHL20(2)           ----- -------->DOF2        --------->AHL20(2)      <-------TEIL<---------ANAC55(2)     ---------->DOF2 <--   ctaaagtcaattttcaacacttattttaatgacttgacatatggagagttcatagtaatcacatgaaatttaatacacagaagacaaagagacgttttct  25320000  --------->AHL20(2)         <---------AHL20(1)  <---------AHL20(2)         --------->AHL20(1)  ----------->TBP          <---------AHL20(1) ---------->TBP            <---------ARR11(3) ---------------AGL15      --------->ARR11(3) ------>AHL20(2)      <---------ATHB12                                                             <- ------DOF2  <---------ARR11(3)         *TSS                <---------ICU4                         <- ---------->AGL15    --------->ANAC46 --------->AHL20(2)<---------AHL20(2)                         <- ---------TBP--------->ARR11(3)  <-----------GT1   <-------TEIL                       ----------->GT1   ttatatatatagagagaacttccactgaatatatattacattatatactgatatacatataatctttacaaacttataacaagagaaatggataaaaaat  25320100            <---------YAB1          --------->YAB1         --------->ICU4         <---------YAB1    <---------ANAC46   --------->ALFIN1  <---------ZAT14  --------->ZAT14                                          --------->ANAC58        --------->ZAT14  --------->ZAT18                                          --------->ANAC46 <---------AHL20(2) --------->ALFIN1                     ------>NtERF2  --------->At4g35610 --------->TOE2(3)       ---- --------ANAC58               <---------ZAT6    <------ZmHOX2a(1)      <-------TEIL<---------ZAT18 --------ANAC46         <---------AtMYB61  --------->ALFIN1--------->ANAC58 --------->AHL20(2)  <---- --------ANAC58   <-------TEIL--------->ICU4  <---------ANAC46         ------->TEIL--------->ZAT18   ggagtgtggtgatgatgatgttcgttttggtagtgatggctgccagtggaggagaagcagcaagtcactcatgtacattaaaatgtgaactcacttgcag  25320200  Previous    Next  AGI:  At5g63080.1    Description:  transcription factor jumonji (jmjC) domain-containing protein. similar to transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G78280.1); similar to hypothetical protein OsI_002311 [Oryza sativa (indica cultivar-group)] (GB:EAY74464.1); similar to hypothetical protein OsJ_002098 [Oryza sativa (japonica cultivar-group)] (GB:EAZ12273.1); contains InterPro domain Transcription factor jumonji (InterPro:IPR013129); contains InterPro domain Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347) Range:  from: 25317161    to: 25319670    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g63085.1    Description:  Encodes a Plant thionin family protein Range:  from: 25320040    to: 25320541    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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