Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100            <-----------GT1     <---------ICU4    --------->ICU4                                                                               <---    <---------YAB1      <----------DOF2                                                         >>>>>  <--------HAHB4        <---------DAG2                  <---------DAG2                         ------  --------->YAB1    ---------->ID1         --------->YAB1    <----------DOF2                  <------ <---------YAB1    <-----------GT1  <---------TOE2(3)   <----------DOF2 <----------DOF2     <--------   tgtatcattattttgccattttttcgcttttttatatttatgtagtcatatttctgaacttttcttttgtttttctttgggtctcggttctaaactttga  23169100                              <---------AHL20(2)                             <---------AHL20(2)                                       <---------ANAC58                             <---------AHL20(1)                               ---------->DOF2 --------->ZAT18             --------->AHL20(2)                            --------->YAB1 <---------ZAT18      --------->ANAC46                                    <---------AHL20(2) ------WOX13(1)       --------->ANAC58                                    <---------YAB1            - >>>>ARR2             --------->ANAC58     <---------ZAT14               --------->AHL20(1)        <- --->ATHB12       <-----------GT1          <---------REM1(2)             <---------AHL20(1)        -- ---YAB1      --------->AHL20(1)           --------->ZAT14      ----------->GT1       <---------ANAC58 --DOF2       <---------AHL20(1) <-----------GT1     <---------AHL20(2)  --------->AHL20(2)    ------   ttgttcactattctaatatttttcaggccaatttttttcagtgtcttcactgttttatattgacaagtgtgaaaatataataaagtttccttggtaatca  23169200                                                                 <---------ZAT2                                                                 --------->ZAT2                                                    --------->AHL20(1)                                                    <---------AHL20(2)                                                <---------AHL20(2)                                                --------->AHL20(2)     --------->At4g35610                                               <---------AHL20(2)--------->At4g35610                                            --------->AHL20(2)   ----------->RAV1(2)                      <---------ARR11(3) --------->YAB1         <-----------RAV1(1)               --------->YAB1        <---------YAB1 --------->AHL20(2) --------->ZAT2     <---------MYB52(1)             --------->ARR11(3)   --------->YAB1<---------ZAT2 ----------->MYB.PH3(1)   --------->O2--------->YAB1<---------AHL20(1) <---------At4g35610 --------GLK1(1)      --------->ARR11(3)<---------YAB1   --------->AHL20(2)                     <---- ------->GLK1(1)  ---------->DOF2   <---------ARR11(3) --------->AHL20(2)        <---------AHL20(2) --->YAB1     <---------ATHB12 <---------ANAC46--------->AHL20(2)<---------At4g35610            -----   gaaatccgttagactaatcaaaaagacctcgtgtcgaatatcatcataaattaataaaataatattctgctggagctggtcatttttttttttttttttt  23169300                                                                                                   <-                                                                                               ------                                                              <---------YAB1                   <-----                                                          ------>ZmHOX2a(2)                    ------                                                         <------ZmHOX2a(2)                    -------                                                        --------->ARR11(3)                    <------              <---------GLK1(2)                         <---------ARR11(3)                  ---------        <---------ARR11(3)     <---------ATHB12         <---------ARR14(2)                  <--------        --------->ARR11(3)   --------->WOX13(1)         --------->ARR14(2)                 <---------YAB1       --------->CCA1(1) <-----------GT1                <---------AGP1        <---------TOE2(3)<-----       --------->RVE1(1) <---------WRKY18(1)            --------->AGP1   <---------ARR11(3)--------->ICU4   <------ZmHOX2a(1)<---------AHL20(2)            --------->ZAT6  --------->AHL20(2)      --------->AHL20(2) --------->MYB59 --------->AHL20(2)             <-----------GT1 <---------AHL20(2)        <---------AHL20(1) -----AHL20(2)<---------ARR11(3)              <---------WOX13(1)--------->AHL20(2)        <---------AHL20(2) ---->AHL20(2)--------->ARR11(3)     --------->WOX13(1)<---------CCA1(2)<---------CCA1(2)--------->YAB1   aattaggaaatatctagatttttatattgaccaattagtcaattactgatttactctagatcttatttttatatatatctaagaatagacattataatta  23169400                             <---------ANAC46                           <---------TGA1a                           <---------O2                           <---------ANAC46                           <---------bZIP60(2)                           <---------ANAC58                           <---------ANAC58                         <-----------HVH21 <---------ANAC58       --------->ALFIN1 <---------ANAC58      --------->ATERF1(1) --------AHL20(2)      <------NtERF2 --->AHL20(2)         <---------DEAR3(2) ----AHL20(2)        <---------DEAR3(1) --->ATHB51         <---------ABI4(1) -->ICU4           ==================MYC_MYB ---YAB1           ------->GAMYB                                      <----------DOF2 >YAB1          --------->MYB52(1)                               --------->LBD16 -ICU4        <-------TEIL<------NtERF2   ----------->GT1     <---------LBD16 ----ICU4    --------->CCA1(2) <---------ANAC46  <-----------GT1--------->LBD16---------->ID1   ttttcttgcagtaagatacaacggcggtgtcgtgtgtgtataactggaaaattacgttgttgtctcccgagactttggtttgtctcattccccattcgcg  23169500                                             *TSS                                                <---                                          --------->MYB52(1)                                     ----                                        ------->GAMYB                                            ----                                      <---------------------WRI1                                 ----                                      ------>MYB46(1)                                      <---------GLK1(1)                                      ------>MYB83                           --------->ETT(1)    ----                                     --------->MYB52(1)               <---------ARR14(2)   --------->GLK1(1)                                    --------->AtMYB61                 <---------ARR14(3)  <---------ARR14(2)                    <---------HSFB2a(2)--------->ANAC58               --------->ARR14(3)  <---------ARR11(3)           --------->ZAT18--------->CCA1(2) <---------MYB52(2)        <-----------ARR10   --------->ARR11(3)         <---------At4g35610        --------->TOE1(2)                 --------->GLK1(2)<---------ANAC46      ---------->DOF2    <----------ID1--------->ANAC58               <---------ARR11(3)  --------->ARR14(2)   ----------->TBP  --------->HSFB2a(2)--------->ANAC46               --------->ARR11(3) <------ZmHOX2a(1)   ttcttatataaagctcacagttcgagagagacaagagaccaacgaaacgaactagagacagtttgattcgaaaatcttgtcggaaaatggaggatatcgt  23169600                                                                          <----------DOF2                                                                      <----------DOF2                                                                    <-------TEIL                                                                   <---------ARR11(3)       ---------          --------->ANAC58                                        <---------GLK1(2)      <-----------GT1          --------->ANAC58                                     <-----------RAV1(2)    <-------------- ------ETT(2)                         ------>ZmHOX2a(1)     --------->ANAC58      ------>ZmHOX2a(1) ----->WRKY38(1)            ------>MYB46(1)                 --------->ANAC46      <----------DOF2 ----->ETT(2)               ------>MYB83                    --------->ANAC58   ---------->ID1 ----->DEAR3(1)--------->ICU4<---------ZAT2              --------->ARR14(2)  <---------ANAC58    <--- ----->WRKY12--------->WOX13(1)   ------>ZmHOX2a(1)      <---------ARR14(2)  <---------ANAC58------>ZmHOX2a(1)   cgaccaagaattaagcaattactgggaacctagctccttcctccaaaacgaagacttcgaatacgacaggttctttctttcgtcctttttttttccttac  23169700                                                                                  --------->ATHB12                                                                                 <---------YAB1                                                                              <---------SPL7                                                                             <---------ANAC46                                                                           <-----------HVH21                                                                 <-----------------AGL2                --------->GLK1(2)                     <----------DOF2  <---------LBD16  <----------DOF2                              --------->At4g35610   <---------ARR14(2)         ----- <---------ANAC58               <----------DOF2<---------ZAT2    ----------------->AGL3         <---- <---------ANAC58           ---------->ID1     --------->ZAT2    <-----------------AGL3       <------ >TOE2(3)      --------->ARR11(3)              <---------At4g35610   --------->ARR14(2)    --------->ZAT18 ----------ANAC81  <---------YAB1             --------->GLK1(2)--------->ANAC58 <---------TOE2(2) -------DOF2   <---------ARR11(3)        ---------->DOF2       --------->ANAC58 <---------TOE1(2)  --   tttgctttccatcttgagattttgatatttgtttctttaaaaaaaaagaagctggcctttggaagaagccatttctgggtcgtatgattcgagttcgccg  23169800                  <------NtERF2                <---------ATERF1(2)                <---------DEAR3(1)                --------->DEAR3(1)                --------->ATERF1(2)               <------NtERF2               --------->RAP2.3(1)               --------->ATERF1(1)               --------->DEAR4(2)              <---------RAP2.3(1)              <---------ATERF1(1)              ------>NtERF2      --------->At4g35610   --------->ZAT2------>NtERF2   <---------ZAT2<---------ATERF1(1)   --------->At4g35610                 <------NtERF2   <---------At4g35610   <---------TOE2(3) ---->LBD16  --------->DEAR3(1)      <---------ANAC46 -----SPL7   <---------DEAR3(1)      --------->ETT(1) ---LBD16  <-----------HVH21       <-----------HVH21                    <-----------ARR10   <-------- ------->ALFIN1<---------LBD16    <-----------RAV1(1)    <---------GLK1(2)             <------ZmHOX2a(2)   gatggagctgcttcgtcgccggcttctaagaatattgtgtcggagagaaacagaagacagaaacttaaccagagactcttcgctcttcgatcagttgttc  23169900                                                    --------->ARR14(2)         <---------TOE1(3)                       --------->LBD16--------->YAB1         <---------TOE2(3)                      --------->HSFB2a(2)    --------->ZAT6    ---------->ID1            <---------HSFB2a(2)                               ---  <---------ARR11(3)  <-----------GT1           <---------LBD16<---------YAB1            <---------WOX13(1) -MYB46(3)        <----------DOF2    ---------->ID1<------ZmHOX2a(1)                  <---------YAB1   ccaatatcactaaggtttctctttttccccttgttttttgtcttctaattccaggattcaaacttattatagactctgtttttgttttctgatagatgga  23170000  Previous    Next  AGI:  At5g57150.1    Description:  basic helix-loop-helix (bHLH) family protein. similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT4G29930.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69579.1); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598) Range:  from: 23169545    to: 23172292    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version