Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                     ------>NtERF2                                                                                  --------->DEAR3(1)                                                                                  <---------ALFIN1                                  <---------MYB46(3)                             --------->MYB46(3)                                 <---------ATHB12                               <---------ATERF1(1)                             <---------YAB1                                     --------->LBD16                            <<<<<<<<<<<<<<<<<LFY                  --------->ARR14(2)                           <-----------GT1             --------->O2             ------>NtERF2                       --------->AHL20(1)              --------->ANAC58        --------->ANAC58                       <---------AHL20(2)              --------->ANAC55(2)     --------->ANAC58   <-- -------->bZIP60(1)    --------->AHL20(2)              --------->ANAC55(1)     --------->ANAC46   --- -------->ANAC46      --------->AHL20(2)               --------->ANAC58<---------ANAC58     <-------- ---------bZIP60(1)   <---------AHL20(2)               --------->ANAC46<---------AtLEC2     --------- ------>YAB1      --------->AHL20(2)                   <---------ANAC55(2)    <---------LBD16     --- ---------GT1     <---------AHL20(1)                   --------->bZIP60(2)<-----------HVH21 <-------- ------GT1        --------->AHL20(1)            --------->At4g35610    <---------ANAC58 <-----------HVH21 ---AHL20(2)      <---------AHL20(2)       --------->YAB1         <---------ARR14(2)<------NtERF2 <--   tcacatcactaattagctaattaattaaattaccaatggttccaactataatctgccacgtaatctccgatttgcctgtctccgccaccgtgtcagctag  22532300                                                                 ------>NtERF2                                                                <------NtERF2                                                               ------>NtERF2                                                               <------NtERF2                                                               --------->LBD16                                                               <---------LBD16                                                               <---------At4g35610                                                              <---------ATERF1(1)                                                              --------->DEAR3(1)                                                             --------->ATERF1(1)                                                             <------NtERF2                                                             --------->RAP2.3(1)                                                            --------->ABI4(1)                                                            ------>NtERF2                                                            <---------RAP2.3(1)                                                            <---------ATERF1(1)                                                           --------->RAP2.3(3)                                                           --------->RRTF1(2)                                                           --------->RAP2.3(2)                                                           --------->RRTF1(3)                                                           --------->DEAR3(1)                                                           --------->RAP2.6(2)                                                           --------->ATERF1(2)                                                           <---------ATERF1(2)                                                           <---------DEAR3(1)                                                           --------->ANAC46                                                          <------NtERF2                                                          --------->ERF1                                                          --------->ATERF1(1)                                                          --------->RRTF1(1)                                                          --------->DEAR4(2)                                                          --------->RAP2.3(1)                                                          --------->ORA47(2)                                                         <---------RAP2.3(1)                                                         --------->At4g35610                                                         --------->ABI4(1)                                                         <---------At4g35610                                                         <---------DREB2C(1)                                                         ------>NtERF2                                                         <---------DEAR4(2)                                                         <---------ATERF1(1)                                                        --------->RRTF1(2)                                                        --------->RAP2.3(3)                                                        <---------ALFIN1                                                        <---------ATERF1(2)                                                        --------->DEAR3(1)                                                        --------->RAP2.3(2)                                                        <---------DEAR3(1)                                                        --------->RAP2.6(2)                                                        --------->ATERF1(2)                                                        --------->ANAC46                                                       --------->ERF1                                                       --------->RAP2.3(1)                                                       --------->RAP2.6(1)                                                       --------->DEAR4(2)                                                       --------->RRTF1(1)                                                       --------->ORA47(2)                                                       --------->ATERF1(1)                                                       <------NtERF2                                                      <---------RAP2.3(1)                                                      <---------DREB2C(1)                                                      <---------DEAR4(2)                                                      <---------At4g35610                                                      --------->At4g35610                                                      --------->ABI4(1)                                                      ------>NtERF2                                                      <---------ATERF1(1)                                                     <---------DEAR3(1)                                                     --------->ATERF1(2)                                                     --------->RRTF1(3)                                                     --------->RRTF1(2)                                                     <---------ATERF1(2)                                                     <---------ALFIN1                                                     --------->ANAC46                                                     --------->DEAR3(1)                                                     --------->RAP2.3(3)                                                     --------->RAP2.6(2)                                                     --------->RAP2.3(2)                                                    --------->ORA47(2)            <---------bZIP60(1)                     --------->RRTF1(1)            --------->bZIP60(1)                     --------->DEAR4(2)            <---------TGA1a                         --------->RAP2.3(1)            --------->O2                            --------->ERF1<------NtERF2            <---------O2                            <------NtERF2<---------ATERF1(1)          ------>NtERF2                             --------->RAP2.6(1)          <---------ATERF1(1)                       --------->ATERF1(1)         --------->RAP2.3(3)                       ------>NtERF2<---------DEAR3(1)         --------->DEAR3(1)                        --------->ABI4(1)         ----------->HVH21                         <---------At4g35610        --------->DEAR3(2)                         <---------ATERF1(1)        --------->RAP2.3(1)                        --------->At4g35610    ---------->DOF2                                <---------RAP2.3(1)                              -    ==================bZIP_DOF                     --------->DREB2C(1)                             <- -------ZAT14                                      <---------DREB2C(1)            --------->LBD16---- ------>ZAT14            --------->DEAR3(1)       --------->DEAR3(1)             --------->LBD16 ---- -At4g35610 --------->TGA1a                       <---------ATERF1(2)           --------->HSFB2a(2)<- >At4g35610<------NtERF2 --------->RAP2.3(2)      --------->ATERF1(2)   <<<<<<<<<TBF1    --------->ANAC58 ------>ZAT18           --------->DEAR3(2)   <---------ICU4<---------ALFIN1     <---------LBD16  ---- -ZAT2 <---------At4g35610 <------NtERF2<-----------TGA1--------->RRTF1(3) <<<<<<<<<TBF1 --------->ANAC58 -------ZAT18          <---------At4g35610  --------->ICU4--------->RAP2.6(1)   <---------HSFB2a(2)<-   ttcacttagagccgacgtcgttttgagccgtcgattactcatcgtcatcatgccgccgccgccgccgcggcttcttcttcttcccggagaaacgaaacca  22532400                 --------->ALFIN1               =========================MYC_MYB               --------->bZIP60(1)          --------->ANAC58               <---------bZIP60(2)          --------->ANAC58               --------->O2                 --------->ANAC46                       --------->YAB1               <---------O2------>ZmHOX2a(2)--------->ANAC55(2)                    <---------ICU4               --------->TGA1a              <---------ANAC55(2)                   --------->ICU4          --------->At4g35610      <---------ETT(2)               <---------HSFB2a(1)       <---------AHL20(2)<---------ARR11(3) --------->ANAC55(1)   --------->HSFC1(2) -------->LBD16<---------TGA1a     <---------WRKY38(1)      <---------ZAT14    <------NtERF2 --------ANAC58<---------ANAC46    <---------ZAT14          --------->ZAT14   ------>NtERF2 -->MYB46(1)----------->TGA1----------->HVH21        <---------REM1(2)       --------->ETT(2) -->MYB83 <---------At4g35610      --------->ETT(2)  <---------ZAT14        ---------->ID1 --------ANAC46<---------ANAC58    --------->ZAT14   --------->ZAT14 >>>>>>>>>>>>>>>>>LFY   --------- ----->ZAT2 ----------->HVH21--------->MYB52(1)  --------->ZAT6   --------->HSFB2a(1)       --------- --------ANAC58<---------ANAC58 ------->GAMYB   --------->GLK1(1) <---------HSFC1(2) <---------YAB1   gccgtggattttatctgacgtggtcttgatctaacggtccacagagacggaactctacacagtgaagaagcctccattgtcgccattatgactcaagaaa  22532500                                                                       --------->RAP2.6(2)                                                                       --------->ANAC58                                                                       ------->GAMYB                                                                      --------->MYB46(3)                                                                     -------->P                                                                     ------>MYB46(1)                                                                     ------>MYB83                                        --------->ETT(2)            ------>NtERF2                                        --------->DEAR3(1)          --------->MYB55(1)                                        <---------DEAR3(1)        <------NtERF2                                        <---------ETT(2)        --------->ANAC58                                     ==========================================MYC_MYB                                     =========================================MYC_MYB                                     <---------O2               --------->ANAC58                    -                                     --------->bZIP60(2)     <-------TEIL                           -                          --------->AHL20(2)               --------->ARR14(2)                       <                          <---------AHL20(2)               <---------ARR14(2)                     ---                          --------->AHL20(1)       <---------ANAC58--------->DEAR3(1)            ----                    <<<<<<<<<MYB98   <---------TGA1a    <---------ANAC46--------->LBD16    <---------                  ----------->GT1    --------->TGA1a  <-----------HVH21--------->ANAC58   <---------ANAC46     <---------At5g28300 --------->AHL20(2)        <---------ANAC58--------->MYB46(3)     <---------ANAC58    <-----------GT1----------->GT1   --------->O2 <---------LBD16------>NtERF2            <---------ANAC58 >ANAC58         --------->AHL20(1)<---------ALFIN1<---------ANAC46<---------ALFIN1  --------->ALFIN1 >ANAC58   --------->YAB1<---------AHL20(2)  <---------MYB52(1) --------->ANAC46     <-----------RAV1(1)   tcaaattcaccgatgaaaatatgttaaaaaaattgggccacgtcgacgttatttcgggtcgggttcgcgccaaccgcaaataccatcgtgtggctttaaa  22532600                --------->AHL20(1)                --------->ARR11(3)                <---------AHL20(1)                --------->AHL20(2)         <---------ANAC46         --------->YAB1                    <---------ANAC58                                   <------        <---------ATHB12                   <---------ANAC58       *TSS                      ---------    ------------>CBF                      <------NtERF2          --------->ANAC58           -------->HAHB4   ------>NtERF2<---------AHL20(2)        <-----------------------TaNAC69(2)                <-------- -------->At4g35610                      ------>NtERF2           --------->ANAC46          --------->ICU4 -------->ZAT2  <---------ARR11(3)    --------->MYB52(1)         --------->ANAC58<---------ANAC58 ---------At4g35610           --------->TOE2(3)                <---------DOF5.7(2)  *TSS   <---------ATHB51 ------>DAG2   --------->AHL20(2)---------->DOF2              --------->ZAT14    <---------ANAC58 ------>DOF2 --------->AHL20(2)  <---------AHL20(2) ----------------------->TaNAC69(2)   --------->YAB1 -DOF2--------->WOX13(1)    <-------TEIL<---------DEAR3(1)    --------->ARR14(2) <---------ANAC46----   aaagctgccaatcaaaaatatattctaaaatacattaaaacgacggcgtgtaatcggaaaacagtaaacgccattagagtcttgtgtgtgttaataatga  22532700                                                    --------->KAN4(2)                                                    <---------ARR14(2)                                                    --------->ARR14(2)                                                   --------->KAN4(1)                                                   <----------TaMYB80                                                  <---------ARR14(2)                                                  ----------->ARR10                                                  ---------->TaMYB80                                                  --------->ARR14(2)                              <--                                                  <---------KAN4(2)                            ------                                               ----------->GT1                               <------- ---YAB1                                      <---------TOE2(3)                     --------->ZAT14 >YAB1                                    <----------DOF2   <---------ATHB12        <---------ZAT14 -ICU4      <----------DOF2           <---------TOE1(3)   --------->WOX13(1)     ------>ZmHOX2a(1)--- --->TEIL   <---------DAG2            <---------TOE2(3)--------->ANAC46----------->GT1       <-------   atctcaaaacaaaacttttttgtttgtttgttttggaattagggttttagggtatattcgcaatcactctaatcggataattcctctactctgttaacat  22532800                               --------->GLK1(1)                             <------NtERF2                           <---------ANAC58                           <---------ANAC58                           <---------ANAC46                 <-----------------AGL2                 <-----------------AGL1                                       <---------ANAC58     <<<<<<<<<TBF1 --------->LBD16                                    <-----------GT1 -------ARR11(3)-------->P<---------LBD16                            --------->ZAT14 --->TOE2(3)    ------>MYB46(1)<---------GLK1(1)                    <----------DOF2 --TOE2(3)     ------>ZmHOX2a(1)        --------->ZAT14       --------->ARR14(2)               ====== ------>ARR11(3)------>MYB83--------->LBD16                   <---------ARR14(2)       <-----------GT1 --YAB1--------------------->WRI1       <---------ZAT14 --------->TOE1(2)     <---------ANAC58 <-----   tatcttcttcttcgttcctaccgcaaatggcgggtttctcactgtactgttttaaaaaccctcgaattctctttactcttccgtcggaatcacctctctt  22532900                                                                              --------->ANAC58                                                                              --------->ANAC58                                                                            <---------ALFIN1                                                                           <---------ZAT18                                  <---------RAP2.6(2)                      --------->ZAT18                                 --------->RAP2.6(3)                      --------->ANAC58                               ----------->HVH21                       --------->SPL7                             --------->O2                              <-------TEIL                             <---------O2                              ------->TEIL                             --------->TGA1a                         <---------SPL7                             <---------TGA1a                        <---------ANAC58                            <------NtERF2                           <---------ANAC58                           ------>NtERF2                            <---------ANAC55(2)                          ----------->HVH21                    <---------ANAC46                          <---------DEAR3(1)                   <---------ANAC58                          --------->DEAR3(1)           <---------TOE1(2)  --------->ANAC58                         --------->RAP2.3(1)           <---------TOE2(2)  --------->ANAC46       ----                        <---------ATERF1(1)         --------->O2  <---------TGA2(2)             <----                        --------->LBD16             <---------O2 ----------->HVH21         --------->ARR11(3)         <---------YAB1--------->DEAR3(1)--------->REM1(2)     <---------ANAC58            <---------ARR11(3) ======================================bZIP_DOF     --------->TGA1a <---------ANAC46   --------->LBD16 -----DOF2            <---------LBD16  <------NtERF2<---------TGA1a--------------->AtSPL3 --------->YAB1   tgttttgggttctgataaatgttcaccggcgacgagacggccgagtagaaagactcgtgggtttgtcgtgacgtacgcgcactctaatccgaagataatc  22533000                                                                                    <---------ICU4                                                                        --------->YAB1                                                                       --------->ICU4  --------->ATHB12                                                                       <---------YAB1 <---------YAB1                                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                     --------->YAB1 --------->YAB1                                                                    --------->ICU4 --------->ICU4                                                                    <---------YAB1 <---------YAB1                                                                  --------->YAB1 --------->YAB1                                                                 <---------YAB1 <---------YAB1                              <---------MYB52(1)                 --------->ICU4 --------->ICU4                              --------->DOF5.7(2)              --------->YAB1 --------->YAB1      >>>>>>>>>TBF1          --------->TOE2(3)                <---------YAB1 --------->ICU4    <xxxxxxxxxxxxxxxxsmallRNA(i)                              --------->ICU4 <---------YAB1         <  --------->LBD16            --------->TOE1(3)              --------->YAB1 --------->YAB1       ----- ----->WOX13(1)   --------->CCA1(2)      ----------->HVH21 --------->ICU4 <---------YAB1        <---- -----ICU4        --------->ALFIN1<-----------GT1          <---------YAB1 --------->ICU4   ----------   aatccgaagaagaagtcgaggtatgggcaaacgttatctccatatgacagtgatgaagatgatgatgatgatgatgatgatgatgatgatgactggttac  22533100                                                                                             <-------                                                                                <------ZmHOX2a(1)     --------->MYB52(2)                                        <---------ARR11(3)        <---------At4g35610  --------->TOE2(3)                                   ----------->GT1         <---------TOE2(3) ---------TOE2(3)                                    ----------->GT1       <----------DOF2   <------- ---->ANAC55(2)                                    <---------TOE1(3)  <----------DOF2    --------->At4g35610 -----ANAC55(2)                                    <---------TOE2(3)---------->ID1 --------->ATHB12 ->GT1     <----------DOF2                   <---------TOE2(3) --------->ARR11(3) <---------YAB1   ttaatgttagtttcttttgttttctcttatgaaatttgtttgattttgagattaagggtttaaaagatttgtcttttctttaggatgatttcgctgaggt  22533200  Previous    Next  AGI:  At5g55570.1    Description:  heat shock protein binding / unfolded protein binding. similar to unnamed protein product [Vitis vinifera] (GB:CAO38848.1); contains InterPro domain Heat shock protein DnaJ, cysteine-rich region; (InterPro:IPR001305) Range:  from: 22531701    to: 22532684    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g55580.1    Description:  mitochondrial transcription termination factor family protein / mTERF family protein. similar to EMB2219 (EMBRYO DEFECTIVE 2219) [Arabidopsis thaliana] (TAIR:AT2G21710.1); similar to hypothetical protein OsJ_023925 [Oryza sativa (japonica cultivar-group)] (GB:EAZ40442.1); similar to Os07g0583200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060114.1); contains InterPro domain Mitochodrial transcription termination factor-related (InterPro:IPR003690) Range:  from: 22532666    to: 22535155    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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