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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
---------->
DOF2
------>
ZmHOX2a(1)
<---------
ICU4
--------->
TOE1(3)
--------->
ICU4
--------->
TOE2(3)
--------->
bZIP60(1)
<---------
AHL20(1)
<---------
ANAC58
--------->
At5g28300
--------->
ARR11(3)
<---------
ANAC46
----------->
GT1
<-----
--------->
AHL20(2)
<---------
ANAC58
--------->
ZAT6
--------->
AHL20(2)
<----------
DOF2
<---------
YAB1
<---------
TOE2(3)
<---------
ZAT6
cattaagtctctttatatattccttaaaactctatattgcattttgattttctagtgcgtataacattgacgttacagtaaaaatttctagttttaatat
21960800
--------->
YAB1
<---------
YAB1
<---------
AHL20(2)
------->
TEIL
--------->
CCA1(2)
--------->
AHL20(1)
<---------
GLK1(1)
<---------
AHL20(2)
--------->
GLK1(1)
--------->
YAB1
--------->
YAB1
<-----------
GT1
<---------
ZAT14
--------->
ANAC58
--------->
YAB1
<---------
AHL20(1)
--------->
ZAT14
--------->
ANAC58
--------->
AHL20(2)
--------->
YAB1
--------->
AHL20(2)
--------->
YAB1
----
ICU4
<---------
At4g35610
<---------
YAB1
--------->
AHL20(2)
<---------
YAB1
--------->
MYB52(1)
tcacaagcatggctgctatttcaattcaatataagttttatcatcgtctacaataatatatgaattttatcatcatatagaagaataacagagctctgat
21960900
--------->
DAG2
<----------
DOF2
---------->
DOF2
<---------
ARR11(3)
<---------
AHL20(2)
<---
--------->
STY1(2)
<----------
DOF2
<-------
PIF5
----
<---------
At4g35610
<-----------
GT1
--------->
AHL20(2)
----
--------->
ZAT6
--------->
ARR11(3)
<---------
YAB1
------->
PIF5
<------
--------->
DEAR3(1)
--------->
MYB52(1)
--------->
ZAT6
--------->
AHL20(2)
<-----------
GT1
cacagactcacagccctgtaactctagctaacaaaattatcttttaactctcttctttattaaaaaaaaagcacttgcatagtagcattttaactgatgt
21961000
--------->
CCA1(2)
--------->
ARR14(2)
<---------
ARR11(3)
--------->
AGP1
--------->
ARR11(3)
---------->
DOF2
-
----------->
RAV1(1)
--
--------->
AtMYB61
--
------>
MYB46(1)
<--------
----------->
RAV1(1)
--------->
ORA47(1)
---------
<----------
DOF2
------>
ZmHOX2a(1)
--------->
DEAR3(1)
<--------
<---------
ANAC58
---------->
ID1
--------->
MYB46(3)
<--------
<---------
ANAC58
--------->
O2
<---------
WRKY18(1)
---------
------
ARR14(2)
<---------
O2
<---------
ICU4
<---------
ARR14(2)
<-
----->
ARR14(2)
<---------
ALFIN1
<-------
TEIL
------>
MYB83
--------->
MYB52(1)
--->
TEIL
--------->
ANAC46
--------->
ETT(2)
-------->
ZAP1
<------
ZmHOX2a(2)
<-
---
ANAC46
----------->
HVH21
<---------
AtLEC2
----------->
HVH21
--------->
DEAR3(2)
--------->
MYB46(3)
atatgctttccctaagcgacacttgtcctcatgcatgaaatcaaattcaatggacgaccgattcatcttgaccgaccacaaagatccaacggctagctgg
21961100
<-----------
RAV1(2)
-------->
CCA1(2)
------->
ARR11(3)
------->
ARR14(2)
<---------
YAB1
-
STY1(2)
<---------
AHL20(1)
<---------
DAG2
>
ZAT2
<---------
AHL20(2)
<----------
DOF2
-
At4g35610
--------->
AHL20(2)
<---------
ZAT2
-
-
ZAT2
----------->
GT1
--------->
At4g35610
----
>
At4g35610
--------->
AHL20(1)
<-----------
RAV1(1)
--------
--------
ARR14(2)
----------->
GT1
----------->
GT1
<---------
At4g35610
------->
TEIL
<-------
--------
ARR11(3)
<------------
CBF
--------->
AHL20(2)
<------
NtERF2
--------->
ZAT6
------------>
CBF
agatatacaggtgttaataaattgttatattccaaaaaaatgggttataatgtggcagctttttgatagtaacactgatgtatttcttacaataaacgac
21961200
--------->
ANAC46
<------
NtERF2
--------->
ANAC58
------>
NtERF2
--------->
ANAC58
<---------
At4g35610
<---------------
AGL15
<---------
HSFC1(2)
--------->
AHL20(2)
--------->
HSFC1(2)
----------->
GT1
--------->
ANAC58
--------->
DAG2
<------
ZmHOX2a(1)
--------->
DOF2
<---------
REM1(1)
<---------
bZIP60(1)
-
----->
AtMYB61
--------->
ALFIN1
--------->
RAP2.6(3)
<------
NtERF2
xxxxxxxxxxxxxxxx>
smallRNA(s)
->
MYB46(3)
--------------->
AGL15
--------->
ANAC58
--------->
GLK1(1)
------->
TEIL
<----------
DOF2
---
ID1
*
TSS
--------->
MYB52(1)
----------->
HVH21
<---------
DEAR3(1)
------>
ZmHOX2a(1)
--
caaaaagt
taatacaagaaatagaaacggtgtaggaagctact
atgacggcaattccaaacgtcgtcgatattgaatcttcttcctcttcgctttgtcaa
21961300
-
<
<---------
bZIP60(1)
<-------
<---------
O2
---------
<-----------
HVH21
--------->
bZIP60(1)
<------
ZmHOX2a(1)
------->
GAMYB
--------->
O2
--------->
ANAC58
<-
--------->
MYB52(1)
----------->
HVH21
<---------
TOE2(3)
<---
<------
NtERF2
--------->
ANAC58
--------->
ANAC58
-----
--------->
ANAC58
--------->
ANAC46
<---------
ATHB12
---------
--------->
ANAC58
<-------
TEIL
--------->
ANAC58
<---------------
AGL15
<-----
-------->
RAP2.6(3)
---------->
DOF2
---------->
DOF2
<-----------
GT1
<------
ZmHOX2a(1)
------->
CCA1(2)
<-------
GAMYB
<-------
TEIL
--------->
SPL7
--------------->
AGL15
------
gagacggcaacggagaccgtcaccgttgaaagaggctcgtctgattcatcttcaaagccagacgacgtcgttttactaatcaaggaagaggaggatgacg
21961400
<-----------
HVH21
<---------
DOF5.7(2)
-------->
DOF5.7(2)
---------
MYB52(1)
--
TGA2(2)
<--
-->
TGA1
--------->
YAB1
--------->
MYB52(1)
------
GAMYB
<------
MYB83
---------->
DOF2
---
NtERF2
----------->
GT1
----------->
HVH21
-
->
NtERF2
<------
MYB46(1)
<------
ZmHOX2a(2)
<----
-->
HVH21
<---------
O2
--------->
ANAC46
--------->
ARR11(3)
-----
----
bZIP60(1)
--------->
ANAC58
---------->
DOF2
------>
ZmHOX2a(2)
-------
--->
bZIP60(1)
--------->
ANAC58
<---------
MYB52(1)
<---------
ARR11(3)
--------
ccgttaacttgtcacttggtttttggaaattgcacgagataggtttaataacaccgttcttgagaaagacgtttgagatcgtcgatgacaaagtaacaga
21961500
<----------
DOF2
<---------
DAG2
---------->
DOF2
--------->
LBD16
<-------
GAMYB
----------->
GT1
<------
-------
LBD16
--------->
ANAC58
----------------->
AG
-------
-------->
LBD16
<---------
ANAC55(2)
--------->
ARR14(2)
---------
-----
ARR14(2)
--------->
ANAC58
--------->
GLK1(2)
--------->
GLK1(2)
---------
---->
ARR14(2)
<---------
ALFIN1
<---------
GLK1(2)
<---------
ARR14(2)
--------->
ANAC58
>
GAMYB
----------->
HVH21
--------->
ATHB12
<-----------
ARR10
--------->
ANAC58
->
MYB46(3)
--------->
ATERF1(1)
<---------
YAB1
<---------
GLK1(2)
---------->
DOF2
cccggttgtatcatggagcccgacccgtaaaagctttatcatttgggattcttacgagttctcagagaatctacttcccaaatacttcaagcacaagaac
21961600
<---------
ANAC58
--------->
ANAC55(1)
--------->
ANAC55(2)
--------->
ANAC46
<---------
ANAC55(2)
<---------
ANAC58
--------->
ANAC58
--------->
ANAC58
<----------
DOF2
<---------
ANAC55(1)
--------->
ANAC58
<---------
ZAT2
--------->
ANAC58
--------->
ANAC58
<---------
At4g35610
<----------
DOF2
---
ARR11(3)
--------->
At4g35610
<---------
ANAC58
-->
ARR11(3)
<---------
MYB52(1)
--------->
ANAC58
<---------
ANAC58
>
ANAC58
<-----------
HVH21
--------->
TGA2(2)
<----------
DOF2
<---------
ANAC58
>
ANAC58
<-----------
TGA1
<---------
ANAC46
<-----------
GT1
<---------
ANAC58
----------->
GT1
ttctccagttttattcgtcagcttaactcttac
gtaagcacagaacaagtttttactctttagctatgtttcttgctttacaagctttgtaaaaactaga
21961700
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AGI:
At5g54070.1
Description:
AT-HSFA9 (ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A9); DNA binding / transcription factor. Identical to Heat stress transcription factor A-9 (HSFA9) [Arabidopsis Thaliana] (GB:Q9LVW2); similar to ATHSFA2 (Arabidopsis thaliana heat shock transcription factor A2), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G26150.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65333.1); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain Heat shock factor (HSF)-type, DNA-binding; (InterPro:IPR000232)
Range:
from: 21961209
to: 21962545
Orientation: Forward
Links:
TAIR
MIPS
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publications
when using AthaMap.
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