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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                                         --------->At4g35610
                                      ------->GAMYB                                      <---------At4g35610
                              ------>ZmHOX2a(1)                                   --------->ANAC46
                             --------->TOE1(3)  <-----------GT1                 --------->At4g35610
                             --------->TOE2(3) <---------YAB1              --------->ANAC46        -
                            <---------ICU4  <---------YAB1                 --------->ANAC58        -
                  --------->ZAT6     --------->ANAC46                      --------->ANAC58     <---
 
tgttcaattactgactctataactctactaatccttatcaacgaaagattataactattcacttagtttctaactatcaagtcaccagaaacagctcaaa  19345800
                                           <---------TOE2(3) ---------->DOF2
     --------->ANAC46              --------->YAB1      ----------->GT1        <xxxxxxxxxxxxxxxxxxxxx
------>ZmHOX2a(1)                 <---------ATHB12    --------->DAG2       --------->LBD16
-------->TOE1(3)                 ------>MYB46(1)     ---------->DOF2      <---------ANAC58
-------->TOE2(3)  --------->YAB1--------->WOX13(1)----------->GT1         <---------ANAC58      ====
------ARR11(3)   <---------ATHB12------>MYB83--------->AHL20(2)           <---------ANAC46      ----
 
atccttaaactccatgagcaatgatacaacgagaccaatcaaaattaagaaaatagtaaagtagaaaaggaagcataccgtgatagcaataccctcatcc  19345900
                --------->ZAT2
                <---------ZAT2
                --------->At4g35610
               --------->ARR14(2)
       --------->MYB52(1)  <---------At4g35610                                         <-----------GT1
    --------->YAB1         <---------ZAT2                                      ------>MYB83
   <------ZmHOX2a(2)       --------->ZAT2                                      ------>MYB46(1)
  <---------ARR11(3)       --------->At4g35610                          --------->MYB46(3)
  --------->ARR11(3)     <---------ZAT18                                <---------MYB52(2)   <------ZmHOX2a(2)
 <------ZmHOX2a(1)    --------->ANAC58   <---------DDF1            --------->YAB1 <---------YAB1
xxxsmallRNA(se3)<---------At4g35610     --------->ETT(2)          >>>>>>>>>MYB98 --------->TOE2(3)
==========HOX2a_HOX2a --------->ANAC58  <---------ETT(2)    ---------->DOF2   ----------->RAV1(1)
-->ZmHOX2a(1)  <---------ARR14(2) <---------ALFIN1     --------->MYB46(3)   --------->MYB46(3)
 
tcgaggatcataacagcgtagctgcaagcgagctctcccactgtcgacattctctgaaaccatcaaagtaacataacaaaccaacattattcacagatca  19346000
                                               ----------->GT1
                                             <---------ANAC58
                                        <---------ARR14(2)
                                        <---------ARR11(3)
                                        --------->ARR14(2)
                                       <---------CCA1(2)
                        --------->KAN4(1)    <---------ANAC58
                        <---------KAN4(1)    <---------ANAC46
                       <---------KAN4(2)--------->ARR11(3)
             <---------AHL20(2)       <---------ARR11(3)
            --------->AHL20(2)        <---------AHL20(1)                                       -----
            --------->AHL20(1)        --------->ARR11(3)      ---------->DOF2              ---------
            <---------AHL20(2)   ----------->GT1          ---------->DOF2    --------->YAB1---------
 
aaacaacactgaaaatttaatgggagaataatcggaaggaatatatctgcttgtaaaattcgaaagaaagaaatgaagaatcatcgatagagtaccttag  19346100
                             ------>NtERF2
                             --------->LBD16
                          ------>NtERF2
                          <---------ATERF1(1)
                         --------->ARR14(2)
                         <---------ARR14(2)
                        <---------ZAT2
                        <---------At4g35610
                        --------->ZAT2                                           <---------ANAC46
                        <------NtERF2                                           <------NtERF2
                        --------->At4g35610                                 --------->ANAC58
                        --------->ATERF1(1)                                 --------->ANAC58
                       <---------ATERF1(1)                               ----------->HVH21
                      <---------DEAR3(1)                               <---------O2
                     <---------LBD16                                   <---------bZIP60(1)
               --------->ANAC58       --------->At4g35610              --------->bZIP60(1)
<---------YAB1 --------->ANAC58       --------->CCA1(2)                <---------bZIP60(2)
---->ZAT6   <----------DOF2--------->ATERF1(1)                       <---------ZAT14        --------
>TOE2(3)   <---------ANAC58<---------LBD16                           --------->ZAT14    ---------->DOF2
>TOE1(3)   <---------ANAC58<------NtERF2                    <---------YAB1  <---------bZIP60(2)  <--
 
actacgattgaaatgctttcgcaacgcggctccggctcgagagatgaagtatcgctagggtttttgattcagtgatgtgacgcagcgtttataaagaaag  19346200
                                                               --------->HSFB2a(2)
                                                               <---------HSFB2a(2)
                                                           ------>ZmHOX2a(2)
                                                          <------ZmHOX2a(2)
                                                         --------->ARR14(3)
                                                         <---------ARR14(3)
                                                         --------->ARR11(3)
                                  <---------ARR11(3)     <---------ARR11(3)
                                  --------->ARR11(3)     <---------ARR14(2)
                                  --------->AHL20(1)     --------->ARR14(2)
                                 <---------AHL20(2)      <-----------ARR10
                               --------->AHL20(2)        --------->AGP1
                              --------->AHL20(1)     ---------->DOF2
           <-------TEIL --------->YAB1 --------->ATHB12 --------->RVE1(1)              <----------DOF2
     ---------->DOF2 <----------DOF2  <-------TEIL  <---------AHL20(2)          <------------CBF
-->DOF2 *TSS   <---------ICU4 <---------AHL20(1)    --------->AHL20(2)         <---------AHL20(2)
--------DOF2--------->ATHB12 --------->AHL20(2)----------------->AGL3          --------->ATHB12   <-
 
ctttgtatcaaagcttcattagggctttcaaaatatatatattcattaggcccatttaaagatcttctggacattttcagatttattgggctttgagtat  19346300
                       <---------WRKY45
                       <---------WRKY38(1)
                       <---------WRKY12
                      --------->WRKY18(1)
                   <---------AtMYB61
                   --------->ALFIN1                                                               --
                 <---------ANAC46                                                             ------
               <---------ANAC46                               --------->AHL20(2)    ---------->DOF2
               <------MYB83                        --------->ICU4                 <---------YAB1  <-
               <---------ANAC58                   <---------TOE2(3)--------->AHL20(2)      <--------
               <------MYB46(1)                    <---------TOE1(3)--------->AHL20(1)      <--------
-----------CBF <---------ANAC58               --------->TOE2(3)    <---------AHL20(2)     --------->MYB52(1)
 
gtattgggcatgtctatttggtgtggtcaacgaattcttgtatttcaaatgttaatgtttatgttttaaataaaatgaacacattttgaaagttaaggga  19346400
                                               ----------->GT1
   <-----------GT1                       <-----------HVH21
--------->YAB1             <---------At4g35610--------->ARR11(3)
------->AHL20(2)           --------->At4g35610<---------ARR11(3)          ------>ZmHOX2a(1)
----->GT1           <---------TOE2(3)   --------->ALFIN1     <---------GLK1(2)
--------AHL20(2)   <-----------GT1   --------->DAG2          --------->ARR14(2)
-TOE2(3)    <---------At5g28300     ---------->DOF2          <---------ARR14(2)            <--------
-TOE1(3)   <-----------GT1<-----------RAV1(1)<---------At4g35610  <---------AtLEC2   <----------DOF2
 
ttaaaataacatttttaccgtttaacattatgctgcataaaaagtgtgagatgtttattacacaaattcgcatggtcctatattggagctttaatggtta  19346500
                  --------->ANAC46
                <---------At4g35610
                --------->At4g35610
            <-----------HVH21                                                                  -----
         <---------ANAC58                                                 <---------ANAC46   -------
     ---------->DOF2                       <-----------GT1         ---------->ID1  --------->DAG2
    <---------WRKY38(1)--------->O2--------->ANAC58               <-----------GT1 ---------->DOF2
    <---------WRKY45  ------>NtERF2--------->ANAC58   <---------TOE1(3)   <---------ANAC58 ---------
  <-----------HVH21  <---------ALFIN1--------->YAB1   <---------TOE2(3)   <---------ANAC58 ---------
-MYB46(3)<---------ANAC58     --------->GLK1(1)      ---------->DOF2 <----------DOF2   <-----------HVH21
 
gaccgagtcaaagcgtgtcagaggccacctctgatttcaagcatataaacaatttttaaagtttttttttttctttttcgtgtggtaaagggtcacacaa  19346600
                                            <---------------AGL15
                                          ------>MYB46(1)
                                          ------>MYB83
                                <---------TOE2(3)        <---------AHL20(1)
                   --------->YAB1       <---------MYB46(2)
                  <---------YAB1--------->MYB59          --------->AHL20(2)
               --------->AHL20(2)       <---------MYB111(1)           <---------MYB52(1)
   <---------AHL20(2)       <------ZmHOX2a(1)        --------->ICU4  <-------GAMYB
----->DOF2     <---------AHL20(1)      --------->ANAC55(2)    <---------ICU4
-->ANAC46      --------->AHL20(1)<------MYB46(1)   ----------->GT1<---------At5g28300
>ANAC58        <---------AHL20(2)<------MYB83<----------DOF2 <---------AHL20(2)
>ANAC58 <-----------GT1  <---------LBD16<---------MYB59  <---------AHL20(2)                   ------
 
aagtatttgattcactaatttattataaccaggattaggtttacctaacttttgtagtaattaattcattaccgttactgctacgttgttcaagaatcaa  19346700
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AGI:  At5g47700.1   
Description:  60S acidic ribosomal protein P1 (RPP1C). Identical to 60S acidic ribosomal protein P1-3 (RPP1C) [Arabidopsis Thaliana] (GB:Q8LEQ0;GB:Q9FIK9); similar to 60S acidic ribosomal protein P1 (RPP1A) [Arabidopsis thaliana] (TAIR:AT1G01100.4); similar to 60S acidic ribosomal protein P1 (RPP1A) [Arabidopsis thaliana] (TAIR:AT1G01100.3); similar to 60S acidic ribosomal protein P1 (RPP1A) [Arabidopsis thaliana] (TAIR:AT1G01100.2); similar to acidic ribosomal protein P1a-like [Solanum tuberosum] (GB:ABB29934.1); contains InterPro domain Ribosomal protein 60S; (InterPro:IPR001813)
Range:  from: 19345029    to: 19346209    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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