Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                <--------ATHB1                                                                              <------------ATHB5                                                                              --------->ATHB51                                                                              <---------ICU4                                                                              --------->YAB1                                                                              -------->ATHB1                                                                             --------->ICU4                                                                             <---------ATHB12                                                                             <---------ATHB51                                             <----------DOF2                 <---------YAB1                                            <---------ANAC58              ------------>ATHB5  <---------ICU4                            <---------ANAC46            --------->RAP2.6(2) --------->ICU4                             <---------ANAC58            ----------->RAV1(1) ---AHL20(2)                      <<<<<<<<<MYB98                <------ZmHOX2a(1)         ----------- -->AHL20(2)     <---------AHL20(2)   <------ZmHOX2a(1)  <---------YAB1--------->ZAT18  ----------->GT1   acaatgtttacaaatgtttttattttgttttgttttgttaggagttgcttttgttgattttgatgaggaagaggccacaataattgtgaagagagaaaaa  18557700                                                                                    <---------YAB1                                                                                  <--------ATHB1                                                                                  --------->YAB1                                                                                  <---------AHL20(1)                                                                                  --------->AHL20(2)                              --------->AHL20(2)                                  <---------AHL20(2)                     <---------AHL20(2)                                           <---------ICU4                ----------->GT1                           --------->HSFC1(2)     --------->ICU4                <---------TOE2(3)               ---------->DOF2                  <---------ATHB12      ----------->GT1--------->ICU4         ------->TEIL  <---------HSFC1(2)     <---------ATHB51   - >GT1------->TEIL    --------->AHL20(2)<---------AtLEC2<------ZmHOX2a(1)       --------->YAB1       <   ctcgatgaatgtaaaattaagaaaaaattagataaatttttgaatgaatctaaaggaggatgtttctcttgttttagtcgctaataatttttggagaaga  18557800                                   --------->AHL20(2)     --------->ZAT18               <---------AHL20(2)                                     <---------YAB1     --------->ZAT14               --------->AHL20(1)                                    --------->AHL20(2)     <---------ZAT14         --------->YAB1                                              <---------AHL20(2)  <---------ANAC46        <----------DOF2                           <---------YAB1      --------->YAB1 -------->ZAT14    --------->GLK1(1)           ---------->DOF2  <---------GLK1(2)      <---------YAB1 ---------ZAT14    <---------GLK1(1)      ----------->GT1     ----------->ARR10 <-----------GT1  ----   agtgaagtgaactggtaatggaaatcaactttcaaaataaaatgaagttaaaagaaattacaaatagattctcatttgtatttctccctattataatcta  18557900                                                                                                   <-                                                                                                  <--                                                                                                  ---                                                              <---------AHL20(2)                  <--                                                              <---------AHL20(1)                 ----                                                    <---------ICU4  <---------YAB1               ----            --------->TOE2(3)          --------->ICU4         --------->AHL20(2)                 <---         <<<<<<<<<<GT-3b   --------->YAB1         ----------->RAV1(1)                  <---------AHL20(2) ----->REM1(1)          --------->WOX13(1)--------->ICU4      --------->AHL20(1)       --------->AHL20(2)   caacatcatatttttcttaatttgatcaatcttcataagtcaaaatgatcaacaacattacaaatttattatgttttttttgggtcaaattatatgaaat  18558000                                                         ------>MYB46(1)           <---------AHL20(2)                          --------->AtMYB61    <------MYB46(1)                                    <---------MYB111(1)    ----------->GT1                                    <---------MYB55(2)    <------MYB83                             --------->YAB1   --------->MYB59                          --------->ICU4                             <-----------GT1 --------YAB1 ---------->DOF2               <---------YAB1       <----------DOF2    <---------MYB46(3) -------AHL20(2)                          --------->YAB1 ------>MYB83               <-----------RAV1(1) ------>AHL20(1)                       --------->YAB1  <---------MYB111(2)          <---------REM1(1) -------AHL20(1)                     <---------WOX13(1)--------->MYB46(3)    *TSS<---------MYB46(3) ----->AHL20(2)          ---------->DOF2 <---------YAB1<---------MYB46(2)  ----------->RAV1(1) ----->YAB1--------->AHL20(2)       <------------CBF  --------->ANAC46     --------->MYB52(1)       - ------AHL20(2)    ---------->DOF2 --------->ATHB12--------->MYB46(3)   --------->ANAC46      -------   tatatttggtaaattaaaaagaaaagaaaaagagagttgattgataataataaaccaccaaacccgtcttttagacacaacagttgttgttgccattcat  18558100                                                                                      <---------ANAC58               <----------DOF2                                                    <---------DAG2               <---------MYB52(1)                                                 <----------DOF2           -------->P                   <---------DAG2                           <---------ANAC58         --------->MYB46(3)--------->ANAC58                                      <---------ANAC58 -------->ANAC46 <---------AtMYB61<---------ATHB12    ------>ZmHOX2a(1)     <----------DOF2         < -->YAB1 --------->AtMYB61 --------->ANAC58          --------->TOE2(3) <-----------GT1<---------ANAC58   acgcgcttccatcaaccctttggtcttggaagccaaatcaaacctttccttcaatcctcaaattttcgaaaattttctcttttgctttacgttctctcaa  18558200                                                                                    ------>ZmHOX2a(2)                                                                                  --------->ARR14(2)                                                                                  <---------ARR14(2)                                                                              <---------LBD16                                                                              --------->YAB1                                <---------ATHB12                           --------->WOX13(1)                              --------->WOX13(1)                        <-----------HVH21          <-                            <---------ATHB12                           <---------ANAC58            --                       <----------DOF2 ---------->DOF2                 <---------ANAC58     ---------                   ---------->ID1--------->YAB1<----------DOF2  <XXXXXXXXXXXXXXXXXXXXMIR168A/B    --- ---------YAB1   <---------MYB46(3)  <---------ATHB12<---------YAB1    <---------ANAC46     <--------   ttcttatttgtaagaaagtttgttcctttaatcaatcaaatcaaagagacttttgaagattgtttcccaatttgcgtcaatcgggatcgagtcaaatctg  18558300                      <-------TEIL         --------->ANAC46                                       <---------HSFB2a(1)       <---------ALFIN1                                    --------->ANAC58 --------ARR11(3)   <---------MYB52(1)                <----------ID1 ------->ARR11(3) <---------------AtSPL3 --------->YAB1<------ZmHOX2a(1)          <---------GLK1(2) >ARR14(2) --------->YAB1      <---------ICU4      ---------->DOF2             <---------WOX13(1) ------>GLK1(1) ----------->RAV1(2)----------------->AGL1  --------->ANAC58  --------->ATHB12       < -ARR14(2)<---------ATHB12    <---------YAB1    --------->TOE2(3)           <---------YAB1        ---   aaatcttctccactcatcatctggtacgtttgatgattccaaatcagaaacattaaaggacaagaaatgttcgaatttttgattgattctctctgatttt  18558400           <---------HSFB2a(2)           --------->HSFB2a(2)         <---------REM1(1)       <-------GAMYB      <------MYB83      <------MYB46(1)       <------MYB83 <--------HAHB4             <------MYB46(1)                    <---------ARR14(2) --------->ATHB12          --------->MYB59                     <---------GLK1(2)--------->At4g35610 <---------ICU4--------->ANAC58                            <---------LBD16      <---------At4g35610 < --------->YAB1--------->ANAC58<-------TEIL           <---------MYB52(1) --------->ARR11(1)         < ---------ATHB12           <---------AtMYB61  <-----------RAV1(1)      ----------->ARR10            - ------>WOX13(1)   ---------->DOF2          <---------ANAC46   --------->ARR14(2)                <---   caatcatttggttgtagaagcaaaagggtttggttcattcattctctcgtgttgcccttatttcggattcggatagatttggagctaaattaggggtttt  18558500                                  <---------ANAC58                                 --------->HSFC1(2)                       --------->AHL20(2)                                       --------------->AGL15                       <---------AHL20(2)                                  <----------DOF2                       --------->AHL20(1)                            <---------ICU4  ---------->DOF2                       <---------AHL20(1)                           --------->AHL20(2) ----------DOF2       --------->AHL20(2)                            <---------AHL20(2) ---------DAG2        <---------ATHB12       ---------->DOF2    <---------YAB1 <---------ANAC58 -------------------->WRI1       <---------HSFC1(2)       <---------AHL20(2)   <---------ANAC58 --------GT1      <---------ATHB12<---------ANAC58        <---------YAB1<-----------GT1           <--   gacttttttagtttctcccattcaataaatttcgaagcttgtgagggaaaagtcttggtttttattgtcatttattactttgcttcttaaagcttgagag  18558600  Previous    Next  AGI:  At5g45710.1    Description:  AT-HSFA4C (Arabidopsis thaliana heat shock transcription factor A4C); DNA binding / transcription factor. Identical to Heat stress transcription factor A-4c (HSFA4C) [Arabidopsis Thaliana] (GB:Q9FK72); similar to AT-HSFA4A (Arabidopsis thaliana heat shock transcription factor A4A), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G18880.1); similar to heat shock transcription factor [Phaseolus acutifolius] (GB:AAL12248.1); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain Heat shock factor (HSF)-type, DNA-binding; (InterPro:IPR000232) Range:  from: 18558077    to: 18560090    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version