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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                       --------->ATHB12
                      <-------TEIL
                 --------->DAG2                                                                 <---
                ---------->DOF2                                                               <-----
        --------->ANAC58                          ---------->DOF2<-----------GT1              ------
        --------->ANAC58                      --------->ANAC46 --------->AHL20(2)       --------->TOE2(3)
---->GAMYB   --------->YAB1         --------->ANAC46  <---------GLK1(2)    --------->ZAT6------>ZmHOX2a(1)
 
cacacattggcactaaacataaagcttcattggagataaacccaattcccccccaaagaaactcaattaaaccgaatcacactaaatcagtccttaatta  18110300
                                                                          ---------->DOF2
                  --------->YAB1                                        <---------------AGL15
       --------->ZAT6                                          --------->ANAC46
      <---------TOE2(3)                                        --------->ANAC58
      <---------YAB1        --------->ANAC46               <---------ANAC55(2)
--------GT1     --------->ANAC58               <---------ATHB12--------->ANAC58 <------ZmHOX2a(1)
----AHL20(2)    --------->ANAC58    --------->ANAC58       --------->ANAC55(2) ----------->GT1    --
--->AHL20(2)    --------->ANAC46    --------->ANAC58     --------->AHL20(2)--------->DAG2  ---------
 
aacagcattaacattacacaagcatcaaaacccctcaccaagtaagataaatcatcgaaattacataagcaaatacaaaaagaggaaatacccagaaagg  18110400
                                                                                   --------->ANAC58
                                                                                  <------NtERF2
                                                                                 ------>NtERF2
                     --------->At4g35610                                         <---------ATERF1(1)
                    <---------ARR14(2)                                          ----------->HVH21
                    --------->GLK1(2)                                           <---------DEAR3(1)
                    --------->ARR14(2)                                          --------->DEAR3(1)
                --------->LBD16                                                --------->ATERF1(1)
            --------->ARR14(2)                                                <---------ATERF1(1)
            --------->GLK1(2)                                                 --------->LBD16
            <---------ARR14(2)                                            --------->ARR14(2)
    --------->At4g35610                                                   <---------ARR14(2)
    --------->ZAT2 <---------GLK1(1)        ---------->DOF2       <------ZmHOX2a(1)--------->ANAC58
    <---------At4g35610                 ----------->GT1    --------->YAB1--------->GLK1(1)
-------->DOF2 --------->TOE1(2)     --------->DAG2       <---------MYB52(1) <---------LBD16
->DOF2  <-----------------AGL1     ---------->DOF2   ------>ZmHOX2a(1)   <---------GLK1(1)
 
agaaagcagcttacaaatctgggaatctgaaatcggaataaagttgttaaagagtcctccgataatcaaggacgagaaatccggcgacggaagttaggga  18110500
                                                   --------->O2
                                                   ===============================bZIP_DOF
                                                   --------->TGA1a
                                                   <---------O2
                                                   <---------TGA1a
                                                ----------->HVH21
                                                <------NtERF2
                                           --------->ANAC58            ---------->DOF2
                                           --------->ANAC58    <-------TEIL
                                        --------->ZAT18       --------->ARR14(1)
          ---------->DOF2           <---------HSFB2a(2)      <---------ARR14(2)
      --------->LBD16          <<<<<<<<<TBF1--------->DEAR3(1)--------->CCA1(2)
     <---------ANAC46       <<<<<<<<<TBF1 --------->SPL7     --------->ARR11(1)
     --------->LBD16     <<<<<<<<<TBF1--------->ANAC46       --------->ARR14(2)
    <---------LBD16   <<<<<<<<<TBF1 --------->HSFB2a(2)     --------->CCA1(2)                -------
 
ttgaagtcccggagaaaggggcttcttcttcttcttcttctagggcacggcctcacgagagagagatacgaagggaaagagagagagagaatgagagaaa  18110600
                  ----------->GT1
                 ----------->GT1
            --------->ANAC58
            --------->ANAC58
            --------->ANAC46
          --------->ANAC58
          --------->ANAC46
          --------->ANAC58
          <---------ANAC55(2)   <---------ZAT6
       <---------REM1(2) --------->AHL20(2)
       <------NtERF2     --------->AHL20(1)
      ------>NtERF2      <---------AHL20(2)               <----------DOF2
      <-----------HVH21  <---------AHL20(1)        --------->WRKY18(1)         ---------->DOF2
     ----------->HVH21  <---------AHL20(2)        <-----------HVH21           *TSS
--->DOF2<---------ALFIN1--------->AHL20(2)    ---------->DOF2    --------->CCA1(2)
 
gagagaaggcgacacgcgaaacgataaataaattagagatagagagagagaaaggtcaagtctttgagagatgggtttgggttaaagggagagagagaga  18110700
                                                                                        --------->ANAC58
                                                                                     --------->ZAT14
                                                                          ------------>CBF
                                                                         ------>MYB46(1)--------->ANAC46
                                                                         ----------->RAV1(1)
                                                                         ------>MYB83<---------SPL7
                                                                       <---------MYB55(2)         <-
                                                                       --------->MYB46(3)       ----
                                      --------->LBD16                 --------->ANAC58  <---------TGA1a
                                      ------>NtERF2            <---------O2--------->MYB46(3)   <---
                                    <---------LBD16            <---------bZIP60(2)  --------->DEAR3(1)
                               --------->ARR14(2)              <---------TGA1a     --------->ANAC58
                       <---------YAB1--------->DEAR3(1)     ----------->HVH21      --------->ANAC58
              ---------->DOF2  <---------GLK1(2)     --------->ANAC58 --------->ANAC58  --------->TGA1a
          ---------->DOF2      <---------ARR14(2)    --------->ANAC58 --------->ANAC46  --------->ANAC58
       <----------ID1<---------At4g35610           --------->MYB52(1)------>NtERF2 --------->ANAC46<
 
gagagagatagcgaaaagaaaggcatatgattcggattcgccgggctcataggggaacggactctgacatggcacccaacaatcgcaccgcacgagacag  18110800
                                         -------->ABF1
                                         <-------MYC4
                                         ------->MYC3
                                         <-------MYC2
                                         ------->MYC2
                                         ------->MYC4
                                         <-------MYC3
                                        ===============================bZIP_DOF
                                        ===============================bZIP_DOF
                                        --------->ANAC55(2)
                                        =====================================MYC_MYB
                                        =======================================MYC_MYB
                                        <---------ANAC55(2)
                                        --------->ANAC46
                                        --------->TGA1a
                                        <---------O2
                                        --------->O2
                                        <---------TGA1a                      ----------->RAV1(1)
                                        =====================================MYC_MYB<---------ARR11(3)
                                     --------->ZAT14                      ------>MYB83
                                     <---------ZAT14                      ----------->RAV1(1)      <
                                     <---------REM1(2)                    ------>MYB46(1)         <-
             <---------ZAT18        <-----------------PIF3(1)           ------->GAMYB       <-------
            ----------->HVH21      --------->ANAC46                     --------->MYB46(3)  <-------
   --------->MYB52(1)            --------->ZAT6                      ------->GAMYB  --------->ARR11(3)
--------->LBD16                  <-----------GT1                    --------->MYB46(3)<---------ANAC58
--------LBD16--------->ZAT18    <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)-------->P---------->DOF2   <-
----->ARR14(2)               <----------DOF2     <---------ALFIN1   <---------MYB55(2)<---------ANAC58
------ARR14(2)               =====================bZIP_DOF          <---------MYB111(2)    <--------
---------LBD16           ------>ZmHOX2a(1) <-----------HVH21<----------DOF2 --------->MYB46(3)  <---
 
aaccgggaacggagagtgacctctcttcctctcttttcactacacgtgtccccctctctctctctttatcaacaacccaacaacaaaggtcttgcctttt  18110900
                                         <---------MYB52(1)
                                        <-------GAMYB
                                     <---------At4g35610
                             --------->HSFB2a(1)                <-----------HVH21
                             --------->HSFC1(2)          --------->ATHB12
----------DOF2               <---------HSFC1(2)          <--------HAHB4
--------ANAC58             <---------ARR14(2)            <---------ICU4
---DOF2                    --------->ARR14(2)        --------->MYB46(3)
--DAG2                   ----------->HVH21      --------->HSFB2a(2)             <---------ATHB12 ---
--------ANAC58      ----------->HVH21--------->At4g35610<---------YAB1     <------ZmHOX2a(2)     ---
-DAG2  ------>ZmHOX2a(1) <---------SPL7<----------DOF2--------->YAB1   <---------ZAT18           <--
--------GT1<---------MYB52(1)<---------HSFB2a(1)<---------HSFB2a(2)    --------->ZAT18   <----------ID1
 
tgctttcttcctccgtttcggttcggaccggacccttctctgctgttatgtctcgaaccatcatttgtgtcaagtgcgatccaatgagagaagagacaaa  18111000
          ------>ZmHOX2a(2)
        <---------ARR14(2)
        <---------AGP1
        --------->ARR11(3)                   <---------MYB52(1)
        ------->TEIL                        <----------DOF2
        <---------ARR11(3)                  ------>ZmHOX2a(1)
        --------->ARR14(2)                ------>ZmHOX2a(2)
       <---------CCA1(2)                <---------ARR14(2)          <---------AHL20(2)
 ------>NtERF2                          <---------ARR11(3)        <---------YAB1
 --------->LBD16                        --------->ARR11(3)       <---------AHL20(1)
--------->ANAC58                        --------->AGP1           <---------AHL20(2)
--------->ANAC46                        --------->ARR14(2)     <---------AHL20(2)
--------->ANAC58                  <---------ICU4               <---------YAB1                      <
------>GLK1(2)                   --------->ICU4            <------------------------ANAC81      ----
------>ARR14(2)                 --------->ANAC55(2)     <----------DOF2 <---------YAB1 <---------ZAT2
-------ARR14(2)            ---------->ID1<------ZmHOX2a(2) --------->YAB1              <---------At4g35610
 
aatccgccatggatcttaatttcgaattttgtcttacttattagatcctttagtttctactttgatattatttttatgcttcttgtttttagctggtttt  18111100
                                                                                         -----------
                                                                                         ------>NtERF2
                                                                                        <---------ALFIN1
                                                                                        --------->DEAR3(1)
                                                                                       --------->ERF1
                                                                                       <------NtERF2
                                                                                       --------->ATERF1(1)
                                                                                      <---------ATERF1(1)
                                                                                      ------>NtERF2
                                                                                      --------->ABI4(1)
                                                                                     --------->DEAR3(1)
                                                                                     <---------ATERF1(2)
                                                                                     --------->ATERF1(2)
                                                                                     --------->RRTF1(2)
                                                                                     --------->ANAC46
                                                                                     --------->RRTF1(3)
                                                                                     --------->RAP2.3(3)
                                                                                     --------->RAP2.6(2)
                                                                                     --------->RAP2.3(2)
                                                                                    --------->ORA47(2)
          ----------->ARR10                               <---------ICU4            --------->RAP2.3(1)
    <-------TEIL                                   ----------->GT1                  --------->RRTF1(1)
---------AHL20(2)                                 --------->DAG2                    --------->ERF1
------->GT1                    <----------DOF2   ---------->DOF2                  --------->ANAC46
 
agttaaattcgtttagatactactagacagagagctttttagttttatagaataaagttaaaaatttcaaatctatgtttttaaaacgccgccaccagag  18111200
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AGI:  At5g44800.1   
Description:  CHR4/MI-2-LIKE (chromatin remodeling 4); ATP binding / DNA binding / chromatin binding / helicase. similar to PKL (PICKLE) [Arabidopsis thaliana] (TAIR:AT2G25170.1); similar to hypothetical protein OsJ_023381 [Oryza sativa (japonica cultivar-group)] (GB:EAZ39898.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41956.1); similar to hypothetical protein OsI_025187 [Oryza sativa (indica cultivar-group)] (GB:EAZ03955.1); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); conta
Range:  from: 18100646    to: 18110679    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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