Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100              ------>NtERF2           <---------ANAC46                       --------->TOE2(2)           <---------RAP2.6(2)                   --------->DEAR3(2)          --------->RAP2.6(3)                  <---------ARR14(2)                 --------->LBD16         --------->REM1(2)                  <---------ZAT6               <---------DAG2         --------->MYB52(1)               <---------ANAC46             ------->TEIL        ----------->HVH21                 ----------->GT1         ------>NtERF2  <---------LBD16        ----------->TGA1                <---------ZAT14          <---------DEAR3(1)       <-----------HVH21                --------->ZAT14          --------->DEAR3(1)         ---------    <---------At5g28300                --------->ALFIN1    ----------->HVH21   <---------At5g28300   --------->YAB1                    --------->LBD16      <-----------HVH21 <-----------HVH21  --------->MYB46(3)               <---------LBD16--------->TOE1(2)<------NtERF2<---------LBD16 <----   tacaatcaccgtgacggctaaactcagggcatacttctccggtgtagtgaaaccggcgagggtcacggcgacgagccttttcaccgggatgagagaaagg  17848100                                       <---------CCA1(2)                                       <---------ARR14(1)                                      <---------DEAR3(2)                                   <-----------HVH21                                  --------->DEAR3(1)                                 --------->DEAR3(2)                              --------->ZAT18                              <---------ZAT14                              --------->ZAT14                              <---------ABI4(2)                                      ------>ZmHOX2a(1)                            ------->MYC3  ------>ZmHOX2a(2)                         --------->TOE2(3)                            <-------MYC3<---------AGP1                             ------>ZmHOX2a(2)          <---------ATHB12  <-------MYC2<---------ARR11(3)   <---------ARR14(2)   <------ZmHOX2a(2)      --------->ZAT14       ------->MYC2--------->ARR11(3)   --------->ARR14(2)  --------->ARR11(3)   <------MYB46(1)         <---------ANAC58              <---------LBD16         <---------ARR11(3)   <------MYB83          <---------ANAC46<------ZmHOX2a(2) --------->LBD16       --------->ARR14(2)   <---------DEAR3(2) --------->ARR14(2)<---------ARR14(2)<---------HSFB2a(2)    <---------ARR14(2) ->DOF2  <-----------HVH21 <---------ANAC58          --------->SPL7        <---------SPL7 --ZmHOX2a(1)         <---------ARR14(2)--------->ARR14(2)--------->HSFB2a(2)   <------ZmHOX2a(1) ---   acagtcggtccagtcatggctacggctacgcgtgcaccgtcggatcttgaattcgtacatccggaaatggtctccagcgtaaggatcctcagagtcagag  17848200                                                                                            ---------                                                                                            ---------                                                                            --------->At4g35610                                                  --------->ETT(2)          --------->HSFC1(2)                                                  <---------ETT(2)          <---------HSFC1(2)-------                                                  ===============================bZIP_DOF   <--------                                                  <---------TGA1a           --------->HSFB2a(1)     <                                               ----------->HVH21 --------->LBD16            <--------                                               ----------->TGA1 <---------ANAC46           --------->KAN4(1)                                              <---------MYB52(2)<---------DEAR3(1)         --------->GLK1(1)                                    <---------ZAT18            <---------LBD16     <---------DEAR3(1)                    ========================================bZIP_DOF  ---------->DOF2     ---------->TaMYB80           <----------DOF2   <---------HSFB2a(2)--------->MYB52(1)<------NtERF2   ------>ZmHOX2a(1)==           =================================================bZIP_DOF <------ZmHOX2a(1)    <---------KAN4(2) -------->GT1       <----------DOF2 --------->ZAT18        <---------O2     <---------HSFB2a(1)    <-   tcgtaacaatagtctttctgttctttatagtcgcgaaggggacttgaaactgacgacggagacttggcggaggaaagaagcttcctcggtggaatatcca  17848300                      --------->GLK1(1)                      --------------------->WRI1                      <---------GLK1(1)                     <---------ARR14(2)       <---------At4g35610  <------MYB83       --------->ARR14(2)  <------MYB46(1)<---------LBD16 <---------AtMYB61 --------->LBD16 >ARR11(3)    --------->ALFIN1                                                 --------->YAB1 >ARR14(2)  <---------TGA1a                                                   <---------YAB1 -->MYB46(3)<-----------RAV1(1)                      <---------ANAC46       <-----------GT1         < -ARR11(3)  <---------bZIP60(2)                   --------->ALFIN1         <---------YAB1           < ---------MYB52(1) <------NtERF2                --------->ANAC46           --------->AHL20(2)       < -ARR14(2)  <---------REM1(1)                   <---------O2               <---------AHL20(2)       - =====================MYC_MYB                   --------->O2            <----------DOF2<---------ANAC46 ------GAMYB<---------O2               <-------TEIL <------NtERF2 ---------->DOF2   <----------DOF2 -   ccgttggtctactgatgtggccggatttgtgatgttcgacgtccatgtctacgtggcgaaagatgagagaaagactttttattatacttttgtgtatttg  17848400                                                                                               <-----  ------>ZmHOX2a(1)                                                                     --------->MYB52(2) <---------------AGL15                                --------->ATHB12                <---------MYB52(1) --------------->AGL15                               <---------YAB1                 <---------ANAC58 -----------------AG                     --------->ALFIN1                       --------->CCA1(2) -----------------AGL2             --------->CCA1(2)*TSS<---------WOX13(1)    <---------AHL20(2)   <- -----------------AGL1        <------ZmHOX2a(1)  --------->AHL20(2)         <-----------TBP  -------- ---------------->AGL1     --------->CCA1(2)  ----------->GT1     <------------CBF  <---------ANAC58 ---------------->AG     --------->CCA1(2) --------->ALFIN1    <---------MYB59----------->TBP<-------   tttcctatttgggtttgaatgagagagagataggaagagataagtgtgggataaaatgatagatgcctaattgtctctatatatatgcgttagtggatac  17848500                                                                                                 ----                                                                                                <----     <-------TEIL       --------->ARR11(3)      --------->ARR11(3)                              ----- --TEIL                 <---------ARR11(3) --------->AHL20(2)                           <-----------RAV1(1) ------TEIL         ---------->DOF2 --------->WRKY12<---------TOE2(3)       <---------ZAT14    <----- ->ARR14(2)       --------->CCA1(2) --------->WRKY38(1)                     --------->ZAT14    <----- --ARR14(2)    <---------TOE2(3)   --------->DOF5.7(2)             ----------->GT1 <----------DOF2---   atccatatacatggtttgagataaaagataataagacgttgacaaaaaaatatcaaggatgttttagaatgctaaaattgcagtgcttctatggtggacg  17848600                                                         --------->AHL20(2)                                                      --------->ATHB12                                                     --------->ICU4                        <---------ANAC58             <---------YAB1 ----->ALFIN1           <---------ANAC58           --------->YAB1 ---PIF5         <---------RVE1(1)                 <---------ICU4 -->PIF5         <---------CCA1(1)                --------->ICU4 ----ANAC58     --------->ARR11(3)            <---------AHL20(2) ----ANAC58     <---------ARR11(3)            --------->AHL20(2) -------->GT1  <<<<<<<<<RAP2.2            --------->ATHB12      ----------->GT1                     <   tggttatattcgtttttagatattttgcttaagaacacaacaattgatttaaattatgattaaaaatagtcaaaatatcaacatatgtattgaataactt  17848700                                                                                                    <                                                                                                   <-                       --------->AHL20(2)          <-----------GT1                             <-----                   <---------AHL20(2)            <---------AHL20(2)                            ------                   --------->AHL20(2)         <---------AHL20(2)                               ------              --------->AHL20(2)   --------->ARR11(3)       <---------AHL20(2)        <-----------GT1            >>>>>>>>>GATA-1  ----------->GT1  --------->AHL20(2)                <---------AHL20(2) --          ----------->GT1 ---------->DOF2    --------->AHL20(2)               <----------DOF2  <----- ---------AHL20(2) --------->AHL20(1)        <---------AHL20(2)    ----------->GT1  <---------AHL20(2)   atttttttgaaatagataaaataaaataaaaaggaaacatattgatattaatttatccacattttttttttgttaaaaggctttaatttatccacatttt  17848800                                                                              --------->ATHB12                                                                              -------->HAHB4                                                                         --------->AHL20(2) ---------AHL20(2)                                              --------->AHL20(1)                --- --------AHL20(2)                                      --------------->AtSPL8<---------ATHB12   ----- ----AHL20(1)                           --------->AHL20(2)      <---------AHL20(1)              <---- --->AHL20(1)                           <---------AHL20(2)      <---------AHL20(2)        <---------TOE2(3) --->AHL20(2)                      <------ZmHOX2a(1)   <---------ICU4    <---------AHL20(2)    <----- ------->AHL20(2)       <---------AHL20(2) --------->GLK1(2)   --------->AHL20(2)        ---------->DOF2 ----AHL20(2)   <---------YAB1    ----------->GT1     --------->ICU4<-------TEIL        <---------AHL20(2)   attaattagttttagttcatgagtatatttttaaacaggaaataaaatctgaaacaattagtacattatattcatttaaatgattcgtatttaaagtata  17848900                                      --------->ANAC55(1)                                      --------->ANAC55(2)                        ----------->GT1           --------->AHL20(2)         <---------ANAC55(2)                        <---------ZAT6           <---------AHL20(2)     --------->CCA1(2)                          --------->REM1(2)   <---------ZAT6              --------->DAG2                        --------->YAB1 ------>TOE2(3)              ---------->DOF2                        --------->ICU4                 -- ---->ARR11(3)           <----------ID1                      ---------->DOF2--------->ALFIN1  <------ -----ARR11(3)         ---------->DOF2--------->ANAC46   <---------ZAT6   <---------ANAC46   <------ZmHOX2a(1) ----CCA1(2)<---------AHL20(2)--------->DAG2           <---------ANAC46<---------YAB1  --------->YAB1   tcttagtgttgatttaaattgacaaaaaagaaaaaggtatacgtattgtaagttatttagtggaaaagaaatgatgatgtgtagagttataagaaggaga  17849000  Previous    Next  AGI:  At5g44260.1    Description:  zinc finger (CCCH-type) family protein. similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT1G03790.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69777.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) Range:  from: 17846853    to: 17848452    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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