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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
Go to graphical and table display
1 10 20 30 40 50 60 70 80 90 100
------>
ZmHOX2a(2)
=============
HOX2a_HOX2a
--------->
GLK1(1)
<---------
GLK1(1)
--------->
ARR11(3)
<---------
ARR11(3)
<---------
AGP1
<---------
At4g35610
<---------
ZAT2
<---------
ANAC46
--------->
ANAC58
--------->
ZAT2
<---------
ANAC58
--------->
ANAC58
<---------
At4g35610
<---------
ANAC46
------>
ARR14(2)
--------->
At4g35610
<---------
ANAC58
------>
AGP1
--------->
GLK1(2)
------->
TEIL
<---------
ANAC58
>
P
---------->
DOF2
--------->
ANAC46
------>
ZmHOX2a(1)
<---------
ANAC58
<----------
DOF2
gttctacttctaaagccattctgtctcttcgcagctcatggatctctccttctagcgactgcgtttgcgtttgagatgatgtctttcttctcttgatgtt
17643200
<--
---
----
<-----
------
--------->
AHL20(2)
--------->
TOE2(3)
<---------
CCA1(2)
<------
ZmHOX2a(2)
--------->
ARR14(2)
<---------
ARR11(3)
--------->
At4g35610
<---------
ARR14(2)
--------->
WOX13(1)
--------->
ARR11(3)
cttaagaagatgcctctctcccttcagaaaatgctcatttgcaaattcccatctctctgtatcaatcttcttaaaccc
ctacagatcattaaacaaagat
17643300
-------->
ATHB1
<------
ZmHOX2a(2)
--------->
ATHB12
--------->
ARR11(3)
------->
TEIL
<---------
ICU4
--------->
YAB1
<-------
TEIL
--------->
ATHB51
<---------
TOE2(3)
<---------
ANAC58
<---------
YAB1
<---------
AHL20(2)
<---------
ANAC58
--------->
ICU4
<---------
YAB1
<---------
ANAC46
<---------
At4g35610
<---------
AHL20(2)
-------
AHL20(2)
--------->
ANAC55(2)
--------->
ZAT2
------>
AHL20(2)
--------->
ANAC58
<---------
ANAC55(2)
<---------
ZAT2
----->
AHL20(2)
--------->
ANAC58
<---------
ANAC55(1)
---------->
DOF2
<------
----
ARR11(3)
<---------
ARR11(3)
---------->
DOF2
--------->
ZAT2
----------->
GT1
--
--->
ARR11(3)
------------------------>
ANAC81
--------->
MYB59
--------->
At4g35610
<---------
ATHB51
ttaatttttaatgaagatcaaaataaccaagacaaaaactcaaaagtagttacgtac
ataagtattgagctgtctaacaaagctggagaaattattgtgc
17643400
---
<---------
MYB46(3)
<---------
ANAC58
<-----------
RAV1(1)
<-----------
RAV1(1)
<---------
At4g35610
------->
TEIL
<--
--------->
ANAC58
------->
TEIL
--------->
AtLEC2
<-------
----------->
GT1
---------->
DOF2
--------->
ANAC46
<-------
---
YAB1
--------->
ANAC58
<---------
ATHB12
--------->
At4g35610
<---------
ANAC46
-------->
DOF2
<------
NtERF2
---------->
DOF2
<---------
ATHB12
<---------
At4g35610
<---------
ANAC58
ttaaagcatctagggaggcaaattagggcaaaagtctctggttcccaaacaatgaagctgttgttgtctctgctccatgaaactatgttgtttgtgcttg
17643500
<---------
ANAC58
<------
NtERF2
<---------
DEAR3(1)
<------
MYB83
--------->
MYB52(2)
<------
MYB46(1)
<---------
MYB46(3)
<---------
MYB46(3)
<---------
AtMYB61
------>
ZmHOX2a(1)
<---------
DEAR3(1)
------>
ARR14(2)
<---------
MYB52(1)
<---------
YAB1
-------
ARR14(2)
--------->
ANAC58
<---------
ANAC46
<------
MYB83
--
ANAC58
--------->
ANAC58
<---------
ANAC58
----------->
GT1
--
ANAC58
<-----------
RAV1(1)
---------->
DOF2
<----------
DOF2
<------
MYB46(1)
aatcctccactatgttgtatgttttcgtcaagaaagccgttggtggcgtttctttgagaccctctaatggaattggaaggttataatccat
tttgtgaac
17643600
--------->
YAB1
<---------
AHL20(2)
<----------
DOF2
<---------
DAG2
<----------
DOF2
<---------
AHL20(2)
---------->
DOF2
<---------
ANAC58
--------->
AHL20(2)
--------->
AHL20(2)
<---------
ANAC58
<---------
AHL20(2)
--------->
YAB1
--------->
ICU4
<------
ZmHOX2a(1)
----------->
TBP
<---------
AHL20(2)
<---------
YAB1
<---------
TOE2(3)
<-
--------->
TOE2(3)
--------->
AHL20(2)
<------
ZmHOX2a(1)
--------->
At4g35610
<---------
At4g35610
aaaaaacctatataaatttgagcttttttaataaaaaaagagagaggagagaatagttgtgatgaatagctgaagcttgaggatgcttttatgctgtcta
17643700
<-
--
---
<--
<--
--------
<---------
ANAC58
<-------
<---------
YAB1
<---------
ANAC58
<---------------------
WRI1
--------->
AHL20(1)
<---------
ANAC46
<----------
DOF2
<--------
<---------
AHL20(1)
<----------
DOF2
<---------
YAB1
---------->
DOF2
<---------------
AGL15
<---------
ANAC58
<---------
AHL20(2)
--------->
ZAT18
---
=========================================================================================
<-----------------
AGL3
<---------
ANAC58
--------->
ATHB12
<---------
ANAC46
<--
--------
AHL20(2)
<------------
CBF
--------->
AHL20(2)
<---------
ETT(2)
<--
tatttttggggtttaatatttttggatagaaatgtattgcttttgagtgttttggataagtctatttattagttatctttgatgtggacaaagccgattt
17643800
----------->
TBP
<---------
YAB1
--------->
YAB1
--------------
AGL15
------------->
AGL15
<
-------------->
AGL2
-
---------------
AGL1
-----
---------------
AGL2
<----
->
ARR14(2)
<---------
YAB1
<-----
--
ARR14(2)
<---------
ARR11(3)
------
-
RAP2.6(3)
--------->
ARR11(3)
<------------
CBF
--------->
ARR11(3)
-------------->
AGL3
<-------
TEIL
--------->
GLK1(2)
==============
MADS_MADS
<-----------
HVH21
<----------
DOF2
------->
TEIL
------
---------------
AG
<------
ZmHOX2a(2)
--------->
ATHB12
<----------
DOF2
<---------
YAB1
<-----
---------------
AGL3
<---------
ZAT6
<---------
At4g35610
---------->
ID1
<---------
ARR11(3)
gctataaatggaaatgagagatcatagtgtcatacattcattggaagatgctacttttgtgttcttttgtcttctatgaatatcagaaaatctaaaattt
17643900
<---------
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
<---------
YAB1
--------->
YAB1
<---------
YAB1
--------->
YAB1
<---------
ICU4
<--------
HAHB4
<---------
YAB1
<----
<---------
ATHB12
<---------
ANAC46
--------->
ICU4
<---------
ANAC58
--------->
WOX13(1)
<---------
ANAC58
---------
AHL20(2)
--------->
ANAC55(2)
-------->
AHL20(2)
<---------
ANAC55(2)
---->
AHL20(2)
<-------
TEIL
------->
MYC3
<-------
TEIL
---
-----
AHL20(2)
<---------
HSFC1(2)
<-------
MYC3
--------->
ARR14(1)
----
AHL20(2)
--------->
HSFC1(2)
<---------
O2
--------->
CCA1(2)
--->
AHL20(2)
--------->
YAB1
<<<<<<<<<<
ABI5
<---------
ARR14(2)
--->
AHL20(1)
--------->
TOE2(3)
<<<<<<<<<<
BZIP12
--------->
ARR14(2)
----
AHL20(1)
----------->
RAV1(1)
----------->
HVH21
--------->
ARR11(1)
aattaatcattataaatttagtgactatgctccaacatttataagcttcgttttcgcccatgacacgttgtagtgaatgcatagagatacgtttcgtggt
17644000
<---------
ZAT14
<---------
WOX13(1)
--------->
ZAT14
--------->
ATHB12
--------->
REM1(2)
<---------
AHL20(2)
--------->
CCA1(2)
<---------
YAB1
<----------
DOF2
--------->
ARR11(3)
------>
ZmHOX2a(1)
--------->
ATHB12
<----------
DOF2
=======================
-----
ANAC46
--------->
ICU4
--------->
TCP20
<---------
ANAC46
<---------
ARR14(2)
----
------>
MYB52(2)
--------->
ICU4
<---------
AtMYB61
<---------
ARR11(3)
--------->
ARR14(2)
-----
ttgtttgtttattctgaagtcagaatgatgggatttttggtggaaccctttgaaagatttgtgtagagaacaagagtatcctttgaaaatttgattgatc
17644100
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AGI:
At5g43840.1
Description:
AT-HSFA6A (Arabidopsis thaliana heat shock transcription factor A6A); DNA binding / transcription factor. Identical to Heat stress transcription factor A-6a (HSFA6A) [Arabidopsis Thaliana] (GB:Q1PDN3;GB:Q9FG80); similar to AT-HSFA6B (Arabidopsis thaliana heat shock transcription factor A6B), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G22830.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71226.1); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain Heat shock factor (HSF)-type, DNA-binding; (InterPro:IPR000232)
Range:
from: 17642664
to: 17643591
Orientation: Reverse
Links:
TAIR
MIPS
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publications
when using AthaMap.
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