Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                   ------>MYB46(1)                               --------->AtMYB61                               <---------MYB55(2)                               <---------MYB111(2)                               --------->MYB46(3)                               <---------MYB111(1)                               <---------MYB46(2)                              --------->ANAC58                                          <------ZmHOX2a(1)    --------->YAB1            --------->ANAC58                                      <---------TOE2(1)    <---------ICU4            --------->ANAC46                                 --------->ZAT6  --------->GLK1(2)        <---------MYB55(2)                   --------->MYB46(3)  <---------TOE1(1) --->ANAC46                --------->MYB46(3)           <---------ANAC58 <---------------AGL15 --->ANAC58               ------>MYB83                  <---------ANAC58----------------->AGL2 --->ANAC58               ------>MYB46(1)            <---------TOE1(2)  ----------------->AGL1    --- ----ALFIN1             --------->AtMYB61           <-----------RAV1(2) ----------------->AGL3<------ZmHOX2a(1) --ALFIN1           ------->GAMYB------>MYB83 ---------->DOF2  ------>MYB46(1) --------------->AGL15 -REM1(2)          --------->MYB46(3)     --------->TOE2(3)    ------>MYB83   ----------------->AGL1-   ccacaatcttgactctctctaacagacctcccaccaaacacataccctaaaatcccaggcttaccaacaatcttcccattaccagtacgaggactaggag  17206500                                     <---------DAG2                                     --------->TOE2(3)                               --------->TOE1(3)                               --------->TOE2(3)                               --------->YAB1                              --------->REM1(1)        --------->REM1(1)    --------->GLK1(2)                            <-------TEIL      <-----------GT1       <---------GLK1(2)                          --------->ZAT2   <---------ICU4      ---------->DOF2                                 <---------At4g35610       <--- ------>GLK1(2)--------->HSFB2a(2)   --------->TOE1(3)                 --------->At4g35610 ---------- -------->YAB1 ------>ZmHOX2a(1)  <-----------GT1                      <---------ZAT2    ---------->DOF2   aatcatagttacaactcctagacttcaaaggaatcttaaccttatcaacaacatcatccctactagtagtctcagcttcatcaccagaagacaaagtata  17206600                           <---------ARR11(3)                           --------->ARR11(3)                       --------->MYB46(3)                      ------>MYB83                      ------>MYB46(1)                <-------TEIL              --------->ARR14(2)                     <---------ANAC58      --------->ANAC55(2)     <---------ALFIN1----------->RAV1(1)             <---------ANAC58      <---------ANAC55(2)  <-----------GT1  --------->MYB46(3)        --------->AHL20(2)           <-------TEIL --------GT1  <---------ARR14(2)       --------->HSFB2a(2)         --------->At4g35610 ->GT1        <---------GLK1(2)        <---------HSFB2a(2)         ----------->GT1             ------   aacttcaccactctcagattcaccaacaacatcttcaacttctctaagaaaataagcttgtccagtatgagctaaatacatattgaaaccagaatcaaca  17206700                          -------->P                          ------>MYB83                                              <-----------GT1<-                          ------>MYB46(1)                                          <-----------GT1<--     --------->TOE2(3)   ------>ZmHOX2a(1)                           --------->TOE1(2)        <------ --->ANAC46  <---------YAB1                              <---------CCA1(2)        <---------AHL20(2)   ccattaacatcaattctgatcaaattcctaccattcttcaaaaccccttgaaatttcccaaatctaacataccaaggagacgatttaaacgttccatcag  17206800                                                                                                  <--                                                                                                 ----                                                                                                -----                                                                                               ------                                                                       <--------P             -------                                                                    --------->ANAC58         --------                                                               <---------ALFIN1              --------                                                               --------->ANAC46              --------                                                               --------->REM1(1)           ------>MYB46(1)                                                              -------->P                   ------>MYB83                                         --------->MYB52(1)   ------>MYB46(1)              --------->MYB52(1)                                ------>MYB83                  ------>MYB83--------->ARR11(3) ------->GAMYB                                --------->MYB52(1)          <---------MYB59--------->CCA1(2)---------                                ------>MYB46(1)           --------->SPL7  <---------ARR11(3)---------                              --------->AtMYB61       --------------->AtSPL8               -------->P                              <---------MYB55(2)      <---------------AtSPL3    <---------ANAC58-----                              --------->MYB46(3)      --------------->AtSPL3    <---------ANAC58-----          --------->YAB1    ----------->RAV1(1)      XXXXXXXXXXXXXXXXXXXX>MIR171B/C       ------>ZmHOX2a(1)      --------->MYB46(3)   --------->DEAR3(1)    ----------->HVH21  --------->ANAC46   <------ZmHOX2a(2) --------MYB46(3)         --------->MYB46(3)  ------->TEIL------->TEIL--------->At5g28300 =========== ------P  --------->TOE2(3)<---------ALFIN1   <---------ARR14(2)    --------->ANAC58  <---------ARR14(2) -----RAV1(2)<---------ICU4--------->AtMYB61  --------->ARR14(2)  <---------ALFIN1    --------->ARR14(2)   gttgttcaacaacgataatgtctatcgcaccaccaaatggatgaaacggacctgaaaccgtacctacaccacggtagatatagcttccgatcctaccgac  17206900   --------->YAB1  <-------TEIL                        ========================HOX2a_HOX2a ----NtERF2                 ---------->DOF2                                       <---------ICU4 -->NtERF2                 ------->GAMYB<----------DOF2                           --------->YAB1 ---->ANAC58              --------->ANAC46                                       <---------ATHB12 --->RAP2.6(3)          <XXXXXXXXXXXXXXXXXXXXMIR779.2              <---------bZIP60(2)   --------->MYB52(2) -->MYB52(1)            --------->MYB52(1)                  <---------DAG2   ------------>CBF ->DEAR3(1)             <---------DOF5.7(2)          --------->MYB59 --------->ALFIN1    ----------->GT1 ->At1g77200           <---------WRKY45------>ZmHOX2a(2)    <----------DOF2  <------ZmHOX2a(2) --->HVH21             <---------WRKY38(1)  <---------TOE2(3)   <---------YAB1 --------->WOX13(1) >MYB46(3)             <---------WRKY12=======================HOX2a_HOX2a ------>ZmHOX2a(2) >DEAR3(2)         --------->DAG2     <------ZmHOX2a(2)==========================HOX2a_HOX2a ---->ANAC58      ---------->DOF2    --------->ARR11(3)<------ZmHOX2a(1)<---------ARR14(2)      ----- ---->ANAC46  ------>ZmHOX2a(2)      <---------ARR11(3)=============================HOX2a_HOX2a ----- ====================HOX2a_HOX2a <-----------GT1--------->AHL20(2) <---------ANAC46      <---------MYB46(3)   ggcattcatatttcgatcggaaaagtcaacgaaagttacgatctttgagataaattaggaaactttatgatgtggatcgatcaatcatggtttgttaata  17207000                                                                                    <------ZmHOX2a(2)                                                                                    =================                                                                                   --------->AGP1                                                                     --------->KAN4(2)                                                                    <----------TaMYB80                                                                    --------->KAN4(1)                                                                   ---------->TaMYB80                                                                   <---------KAN4(2)--------->CCA1(2)                                                                ----------->GT1    <---------ARR14(2)                                                               --------->DAG2      --------->ARR14(2)                                  ----------->GT1             --------->DAG2       --------->ARR11(3)                       --------->MYB52(1)                    ---------->DOF2       <---------ARR11(3)                      --------->ARR14(2)                --------->ANAC58       ---------->DOF2      < ---->AHL20(2)        <---------ARR14(2)           <------ZmHOX2a(1)<---------KAN4(1)  --------->LBD16 ---->YAB1          --------->LBD16<------ZmHOX2a(1)    --------->ANAC58 <---------HSFB2a(2)        =   aaaatcgaaactttgaataacccagaaacggagaagaggagaaatggattagaggaagaagcaaaaaggtatattctgtaagaaagatccagagaaggaa  17207100                            <---------ANAC58                            <---------ANAC58                           <---------ICU4                       <---------AHL20(2)                       --------->AHL20(2)                     --------->TOE2(3)                    --------->ATHB12      --------->ICU4                    <--------HAHB4   --------->LBD16               <---------ANAC46                    <---------ICU4  --------->DEAR3(1)             <---------ANAC58                   --------->ICU4  <------NtERF2                   <---------ANAC58                <------ZmHOX2a(2)  --------->ATERF1(1)          <---------MYB52(1)               --------->ARR11(3)  <---------LBD16            --------->MYB52(2)               <---------ARR11(3) ------>NtERF2              <-------TEIL             ----------->ARR10   --------->ATERF1(2)      <---------ANAC58           <---------ALFIN1 ======HOX2a_HOX2a <---------YAB1<---------ATERF1(2)      <---------ANAC58  ------------>CBF ------ZmHOX2a(1)--------->YAB1  --------->DEAR3(1)      <------NtERF2      ------>ZmHOX2a(2) ======================HOX2a_HOX2a<---------ATERF1(1)  --------->ALFIN1 <---------ZAT6------->GAMYB   gaggagacagagacgaagatcatcattaattcttgccgccggacattatttgtttcggtggggttcgtttcgtagtgatccaattcaacacccttcttct  17207200                                                 --------->AHL20(2)                                             --------->AHL20(2)                                             <---------AHL20(2)                                   --------->AHL20(1)                                          <-----                                   <---------AHL20(1)                                   ---------->DOF2                                --------->ATHB51 <---------AHL20(2)               ------->TEIL<------                <---------AHL20(2) --------->AHL20(2)                             <---------ARR14(2)           <---------AHL20(2)   --------->AHL20(2) <---------TOE2(3)              --------->ARR14(2)    --------->ZAT6   <---------AHL20(2)  <---------YAB1                      ----------->GT1  -------  <-----------GT1<---------AHL20(2)<---------AHL20(2)          <---------TOE2(3)  --------->GLK1(2)   cttcttactctatttttttttatttttttttgaataatttattgtcattaattaatgtttcgactaatgttttttaaaaatgtgaatctgcaaagagatc  17207300                                                    --------->AHL20(2)                                                    <---------AHL20(2)                                                 <--------HAHB4                                                 --------->YAB1                                                 <--------ATHB1                                                 --------->ATHB51                                                 <---------ICU4       <-------TEIL          <---------ARR14(2)                    <---------ATHB51   <---------HSFB2a(1)       ----------------->AGL1                   --------->ICU4     <---------HSFC1(2)  ------->TEIL                <----------DOF2   --------->AHL20(2) --------->HSFC1(2) -ZmHOX2a(2)       <---------AHL20(2)           <---------ATHB12  <---------TOE2(2)       --------->AHL20(2) ---ARR11(3)       --------->AHL20(2)   --------->ICU4<---------TOE2(3)           ----------->GT1 -->ARR11(3)      --------->AHL20(2) <---------YAB1<---------YAB1 <---------TOE1(2)       <---------AHL20(2)   aatgtatttgcctatttggattaaattgttttctttattgtcattagtcaataattaatgtttcgacgaaggttcagataaaaatcgtataattttttga  17207400  Previous    Next  AGI:  At5g42870.1    Description:  lipin family protein. similar to lipin family protein [Arabidopsis thaliana] (TAIR:AT3G09560.1); similar to lipin family protein [Arabidopsis thaliana] (TAIR:AT3G09560.2); similar to lipin family protein [Arabidopsis thaliana] (TAIR:AT3G09560.3); similar to hypothetical protein [Vitis vinifera] (GB:CAN78407.1); contains InterPro domain Lipin, N-terminal conserved region (InterPro:IPR007651); contains InterPro domain LNS2, Lipin/Ned1/Smp2 (InterPro:IPR013209) Range:  from: 17202691    to: 17206909    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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