Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                        --------->bZIP60(1)                                    --------->REM1(2)                               <---------At5g28300                              <---------WRKY38(1)                      <---------At4g35610   --------->MYB46(3)        <---------MYB52(1)    <---------WRKY12         ---------->DOF2       <-------GAMYB  --------->At4g35610  --------->ANAC58      ----------->GT1 --------->ZAT18 <---------bZIP60(1)      <---------MYB46(3)     ----------->HVH21    ------>MYB46(1)     <---------DEAR3(1)     <-----------HVH21     ------>MYB83   ------------>AtMYB77 --------->MYB52(1) --------->ANAC58   --------->MYB52(1)  <---------SPL7      <---------ABI4(2)  ---------->DOF2 ----------->GT1  ----------->HVH21   <---------ZAT14 <----------ID1--------->TOE2(3)                            ---- -------->ALFIN1 <---------ANAC58  ----------->TGA1 --------->TOE1(3)              <----------DOF2 ------AtMYB61   <---------ANAC58  ----------->HVH21--------->YAB1                 ------>ZmHOX2a(1) ----->ALFIN1    <---------ANAC46 <-----------HVH21<---------ATHB12      <-----------GT1        <----   tggtgggacggttatgaagccgtgagcaccggtcaccgtgacgacaagcaccaatcttaaagtaaaacggacaattcactctatccttttcagtaccaaa  17188500                                                                                                <----                                                                                               <----- ----->ATHB12              --------->TOE2(3)                                        --------->YAB1 -----ATHB12    ------>NtERF2   --------->YAB1                                     <---------YAB1   gattgaagctaaatgctctgccattctcacctaaacataacaaaaatcaaattcaactaaacacaaattgttcttctacgcttatatgataaatcaaatc  17188600                                                                                                    <                                                                                                    -                                  <-----------ARR10                                  <---------ATHB12                      --------->CCA1(2)<---------TOE1(3)                         <---------ATHB12 --- -----ICU4      --------->GLK1(2)------>MYB83              --------->ZAT6  --------->GLK1(2)  ------- ----ATHB12 --------->YAB1       ------>MYB46(1)     <---------ZAT6 ---------->DOF2--------->WOX13(1)   actacaagaacgattcagaatcagagacgagaaccaaatctaagcttataaacgagagttaacacaaaatcaaagagaatcaaatcaatgaacgaatcag  17188700     ------->TEIL                                             --------->ARR14(2)  <---------YAB1                                              <---------ARR14(2) ---------ICU4             <---------ARR14(2)                 --------->GLK1(2)                 >>>>> -------->YAB1             --------->ARR14(2)          <---------At4g35610          --------->ATHB12 ------>GLK1(2)            --------->AGP1          --------->ALFIN1 --------->MYB52(1)      <------ZmHOX2a(1) -->YAB1   <-----------HVH21<------ZmHOX2a(2)    <---------ANAC46--------->ANAC46 <---------WOX13(1)   aatcatgaatcgttgtcaaatctaaaacagatcgagacgtttctagtcatcgagtggagatgagaatccgaaacggagagagagattgattagaggaaga  17188800                                                          --------->ATERF1(1)                                                          <---------MYB52(1)                                                         <-------GAMYB                                                        <---------ANAC58                                                        <---------ANAC58                                                        <---------bZIP60(2)                                                       <------NtERF2                                                     --------->ALFIN1                                                    --------->ATERF1(1)                                                   --------->At4g35610                                                   <---------ATERF1(1)                                                  --------->ALFIN1                                                 =============================HOX2a_HOX2a                  <---------------AGL15        --------->ALFIN1                  --------------->AGL15     <------NtERF2<---------At4g35610                  <----------DOF2          ------>NtERF2<---------ANAC46         <---------TOE2(3)                 <-----------------AGL3   --------->DEAR3(1)                     <---------TOE1(3)            --------->ARR11(3)            ----------->HVH21            <------ZmHOX2a(2)            --------->ARR14(2)            --------->At1g77200         <---------ARR11(3)            <---------ARR14(2)   --------->ANAC58<------ZmHOX2a(1)--------->YAB1 --------->MYB59            <---------ARR11(3)   --------->GLK1(2)<---------DEAR3(1)  --------->ARR11(3)  --------->MYB52(1)    <---------ZAT6   --------->RAP2.3(1)     <------ZmHOX2a(2)         --------->ATHB12 >>>>TBF1  <------ZmHOX2a(1)     --------->ANAC58=======================HOX2a_HOX2a       <---------AHL20(2)   agaataccgaagaggattttcttttagtggaagagaagctatcgccgacgaggaggtgccgttgccgatcacgatctagggtttaggtttatttgattag  17188900             <------NtERF2       ----------->GT1            --------->LBD16     *TSS   ---------->DOF2          <---------LBD16      <---------ANAC46                                                     -         --------->At4g35610   ----------->GT1                                                      -     <-----------HVH21        --------->ALFIN1          <---------AHL20(2)              <---------REM1(2)  --------->O2               --------->ZAT18        <---------RVE1(1)                  <---------HSFB2a(2)  <---------O2               <---------ZAT14       <---------ARR11(3)                  <-------------  <---------TGA1a            --------->ZAT14       --------->ARR11(3)                  --------------  --------->TGA1a           --------->ALFIN1 ---------->DOF2                   <-----------GT1     --  ================================================bZIP_DOF                    --------->AHL20(2)<----   cgactcgtgtgagccggagagagagagagagtgtggtgaaaaaaagagaaagagatattaatatgggtttattttgcaaataaactattctacaaggagg  17189000                                                                                <----------DOF2                                                                         <---------WOX13(1)   <---------AHL20(2)                                                   <------------CBF   --------->AHL20(1)                                                 <---------TOE2(3)   <---------AHL20(1)                                                 <---------YAB1        ------>NtERF2   --------->AHL20(2)                                                 <---------TOE1(3)     --------- ---------->GT1                                                 --------->ARR14(2)        <---------LBD16 -------->YAB1         ------------>CBF                         <---------ARR11(3) <-----------RAV1(1) --AGL15              <-----------GT1                           <---------ARR14(2) <---------MYB46(3) ->AGL15--------->AHL20(2)  <------------CBF   <-----------TGA1<------ZmHOX2a(1)------>ZmHOX2a(1) ------->ICU4      ----------->GT1            --------->YAB1   ======================HOX2a_HOX2a   -- --ZmHOX2a(1)    ---------->DOF2    ------>ZmHOX2a(1)    --------->MYB52(1)   ------>ZmHOX2a(2)    <-   aataataaaataaactatagaaagttacaatattggtcctcgtcaaaatcgtcataacataacgaggattttaagattgatccttttgttgctccggctc  17189100                                                                       --------->ATHB12                                                                     <---------WOX13(1)                                                               --------->ARR11(3)                      --------->ZAT14                      --------->AHL20(2)             ------>MYB46(1)                              --------->ICU4             ------>MYB83                                 <---------YAB1                  -----------           <---------MYB59                            <---------ARR11(3)   <---------AHL20(2)     --- >LBD16 <-----------GT1      <------------CBF   --------->AGP1 <---------ARR11(3)      --------->CCA1(2) ------->ARR14(2)     <---------ZAT14      --------->MYB52(1) --------->RVE1(1)    --------->AHL20(2) --------ARR14(2)<---------ZAT14         <---------MYB52(2)<---------AHL20(2)      <---------AHL20(2)   agaaccgaataaaccaaactaaactgaactggattggaaggaaacgaacagaactagataattaatatctgaatgatttttttaaaaaaatatgggaata  17189200                                                                             --------->HSFB2a(1)                                                                             <---------HSFC1(2)                                                                             <---------HSFB2a(1)                                                                      ------>MYB46(1)                                                                    --------->AtMYB61                                                                    <---------MYB111(1)          <---------GLK1(2)                            <---------DAG2 ------>MYB83    --------->YAB1   --------->At4g35610                 <-----------HVH21     ---------->ID1  --------->HSFC1(2) >GT1 ---------->DOF2                 --------->TOE1(3)<----------DOF2-------->P     <---------YAB1 ------->DOF2                   --------->ANAC46  ---------->DOF2<---------ALFIN1  <---------At4g35610   aaaagagctaaagcttctctctctcttctctctcacaaaaccttcagagagggaaagctttttgtctccacctacaagaattttccgatgatagccgttc  17189300                                                              ----------->GT1                                                             --------->ANAC58                                                             --------->ANAC58                                                             --------->ANAC46                                                            --------->RAP2.6(3)                                                            --------->SPL7                                                            --------->SPL1(2)                                                           --------->SPL1(1)                                                           <---------SPL1(1)                                                          <---------SPL1(2)                                                          <---------SPL7                                                        <---------------AtSPL3                                                        --------------->AtSPL3                      --------->ARR14(2)                <---------HSFB2a(2)           <----------DOF2     <---------ARR11(3)       --------->HSFB2a(2)  --------->YAB1  --------->AHL20(2)  <---------ARR14(2)               <------------------SPL14  <---------AHL20(2)  <---------ARR11(3)             <---------ARR14(2)   <----------DOF2  --------->AHL20(1)  --------->ARR11(3)      ----------->HVH21    --------->ARR14(2)              <- <---------ATHB51 --------->LBD16             --------->WRKY38(1)  <---------ARR14(2)          <----- --------->AHL20(2)  <---------CCA1(2)      --------->At4g35610   <---------GLK1(1)           <------NtERF2 <---------ATHB12<---------LBD16  <----------DOF2    --------->ARR14(2)------>ZmHOX2a(1)    <-------- <---------AHL20(2) <---------MYB52(1)      <---------At4g35610   --------->GLK1(1)   <---------ARR14(2)   caaataatttgggcttttgcccggtatcttctagctcttttagtggagatgaccggttcccgtacggcaaatcctgctttcataagaggttttggccgct  17189400  Previous    Next  AGI:  At5g42820.1    Description:  ATU2AF35B; RNA binding. similar to ATU2AF35A, RNA binding [Arabidopsis thaliana] (TAIR:AT1G27650.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66301.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain U2 auxiliary factor small subunit; (InterPro:IPR009145) Range:  from: 17187440    to: 17188932    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g42825.1    Description:  contains domain Kazal-type serine protease inhibitors (SSF100895) Range:  from: 17189192    to: 17189970    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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