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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
YAB1
--------->
ICU4
<---------
TOE2(3)
--------->
ATHB12
--------->
MYB46(3)
-
NtERF2
<---------
ATHB12
---
RAP2.6(3)
------>
MYB46(1)
->
DEAR3(1)
------>
MYB83
--
ATERF1(2)
-------->
P
->
RAP2.6(2)
--------->
ANAC58
--------->
AtMYB61
->
ATERF1(2)
<---------
YAB1
<---------
ANAC46
--------->
YAB1
-
RAP2.6(2)
<-------
TEIL
--------->
ANAC58
--------->
MYB46(3)
aagaagttgaacagcatggacgaagtgagcatgaagagtagaagtccatctcattcttggagcacgaatgcttcgtttaagaccaaccattgatgatgag
17092700
----------->
GT1
<------
MYB83
--------->
ICU4
<------
MYB46(1)
<---------
YAB1
<---------
At4g35610
--------->
CCA1(2)
--------->
YAB1
--------->
At4g35610
<---------
ARR14(2)
--------->
ICU4
------>
ZmHOX2a(1)
----------->
ARR10
<---------
YAB1
--------->
TOE2(3)
<-------
GAMYB
--------->
ETT(2)
<--------
P
--------->
YAB1
<---------
ARR14(2)
============
--------->
ARR11(3)
<---------
TOE2(3)
<----------
DOF2
--------->
ARR14(2)
<---------
MYB46(3)
<---------
GLK1(1)
<---------
TOE1(3)
<---------
At4g35610
<---------
WRKY38(1)
--------->
MYB52(2)
cttctcttgaaatctcgaccgtagatttgaggttggaacatgtttgagcgcctttgatgatgatggtcaaatcctaagctcaagagaggtttgttgaaga
17092800
----------->
HVH21
------>
NtERF2
--------->
ABI4(1)
--------->
ANAC46
--------->
DEAR3(1)
--------->
MYB46(3)
--------->
ATERF1(1)
--------->
DEAR3(2)
<---------
At5g28300
----------->
HVH21
<-----------
HVH21
--------->
LBD16
=====
<---------
ANAC58
<---------
ATERF1(1)
-------
--------->
At4g35610
<---------
GLK1(1)
<---------
ANAC58
<---------
At4g35610
--------->
ZAT2
--------->
LBD16
<---------
ANAC46
<---------
TOE2(3)
<---------
ANAC58
<---------
WRKY38(1)
<---------
ANAC58
<-----------
HVH21
<---------
ANAC46
<---------
WRKY12
------>
NtERF2
=====
--------->
TGA1a
--------->
HSFB2a(2)
--------->
GLK1(1)
--------->
REM1(2)
----------->
HVH21
--------->
At4g35610
<---------
GLK1(2)
<---------
LBD16
<---------
RAP2.6(2)
<---------
At4g35610
--------->
LBD16
--------->
At4g35610
<---------
LBD16
=====
<-----------
RAV1(2)
<---------
HSFB2a(2)
<---------
ZAT2
<---------
ANAC46
--------->
LBD16
========================
MYC_MYB
--------->
HSFC1(1)
<---------
At4g35610
<---------
LBD16
<----
agttgttctcatggctcaggtcactgaggctgcttccagaatcactgcttgtggagctccggtcaccgccgtgaagaggttttccggcgtgatagttagg
17092900
--------->
HSFB2a(2)
<---------
HSFB2a(2)
------>
ZmHOX2a(2)
--------->
CCA1(2)
<------
ZmHOX2a(2)
<---------
ARR11(3)
--------->
AGP1
--------->
ARR14(2)
<---------
ARR14(2)
------>
ZmHOX2a(2)
<---------
At4g35610
--------->
At4g35610
<-------
<---------
ZAT14
--------->
ARR11(3)
<---------
YAB1
============
HOX2a_HOX2a
--------->
YAB1
<-----------
GT1
-->
MYB59
<---------
AGP1
<---------
ANAC58
--------->
At4g35610
<-------
=========================
HOX2a_HOX2a
<---------
ANAC58
<---------
ICU4
<----------
DOF2
==========================
HOX2a_HOX2a
--------->
YAB1
--------->
YAB1
<---------
AHL20(2)
--
ZmHOX2a(1)
----------->
ARR10
<---------
At4g35610
--------->
ZAT6
<---------
At4g35610
<---------
YAB1
aagactgatctgaagagacagatctgggactgagtttgaagctctcatactgtttcttgactctaacatcatcat
ctcactattttctttatgattcttg
17093000
---------->
DOF2
--------->
ALFIN1
<---------
ZAT14
<---------
ANAC46
--------->
ZAT14
<---------
YAB1
<------
ZmHOX2a(2)
--------->
At4g35610
----------->
GT1
--------->
AHL20(2)
--------->
GLK1(2)
<---------
At4g35610
*
TSS
--
ANAC58
--------->
ARR11(3)
--------->
ZAT18
<----------
DOF2
---
--
ANAC58
<---------
ARR11(3)
<---------
ZAT14
<---------
ALFIN1
--------
tctacttaaatagtggagatcaaagaatgtgtggaaagagaacgagagagagagagagagctctgcagaaacaacacttttatt
gagggagaaaaaaaag
17093100
<---------
YAB1
--------->
AHL20(1)
<---------
AHL20(2)
<---------
YAB1
--------->
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(1)
--------->
AHL20(2)
<---------
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
<---------
YAB1
<---------
YAB1
--------->
AHL20(1)
<---------
ARR11(3)
<---------
YAB1
<---------
AHL20(1)
<---------
ICU4
<----------
DOF2
----------->
GT1
-------->
GT1
<---------
YAB1
<---------
TOE2(3)
<------------
CBF
<---------
YAB1
-->
DOF2
<---------
AHL20(1)
--------->
ICU4
--------->
GLK1(2)
--------->
ICU4
-----
aggtaaaatattatatttctccatcgttgtcattatctcattaatgtattaaacaaaattctattgtctttttcttattattaaatggtttttttttcca
17093200
--------->
TOE2(1)
--------->
TOE1(1)
------>
ZmHOX2a(1)
<----------
DOF2
------------>
CBF
<---------
YAB1
<---------
ZAT14
>>>>>>>>>>>>>>>>>
LFY
--------->
TOE2(3)
--------->
ZAT14
------>
MYB46(1)
<---------
MYB59
<---------
ZAT18
------>
MYB83
------>
RAV1(1)
<---------
ARR11(3)
--------->
ZAT18
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
acaaaacaattctctacaataccttattattctgaaaacgcttattgcactcttttcctagtactaccaaatgttagtcccaatgtaataaccaaaaaaa
17093300
<---------
ANAC46
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
--------->
ZAT6
<---------
AHL20(2)
--------->
AHL20(2)
<-----------
TBP
<---------
AHL20(2)
<----------
--------->
AHL20(2)
--------->
YAB1
<---------
MYB52(2)
--------->
ICU4
<---------
MYB52(2)
--------->
AHL20(2)
-----------
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
<---------
AHL20(2)
--------->
AHL20(2)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
--------->
AHL20(1)
--------->
YAB1
<------
ZmHOX2a(1)
<------------
CBF
<---------
YAB1
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
----------->
GT1
xxxxxxxxxxxxxxxx>
smallRNA(s)
<---------
AHL20(1)
<---------
YAB1
xx
--------->
ALFIN1
----------->
GT1
--------->
MYB52(1)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
aaaaaaaactagaagtgaggaaatatttatagggtgaattgcaaaactaactgtttttgataatttatttaagaaactaacactataatatacaaaatgt
17093400
<---------
DREB2C(2)
xxxxxxxxxxx
--------->
ALFIN1
<---------
DEAR3(1)
<------
NtERF2
<---------
ABI4(1)
<---------
DEAR4(2)
------>
NtERF2
<---------
ATERF1(1)
<xxxxxxxxxxxx
--------->
ATERF1(2)
<---------
ANAC58
<---------
ANAC46
--------->
ATERF1(1)
<---------
ORA47(1)
xxxxxxxxxxxxxxx
<---------
ATERF1(1)
<---------
MYB46(3)
--------->
ATERF1(1)
<-------
GAMYB
<---------
RAP2.6(2)
<---------
MYB46(3)
<---------
ANAC58
<---------
AtMYB61
xxxxxxxxxxxxxxxxx
<---------
YAB1
--------->
ABI4(2)
<---------
MYB46(3)
--------->
MYB55(2)
<---------
AtMYB61
<---------
MYB46(3)
<---------
ANAC46
<---------
DEAR3(1)
--------->
ALFIN1
<---------
MYB52(1)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
--------->
ALFIN1
<---------
DEAR3(1)
<---------
AtMYB61
--------->
MYB55(2)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<---------
ZAT6
<---------
RAP2.6(2)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
xxxxxxxxxxxxxxxxx>
smallRNA(fl3)
<---------
ORA47(2)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
-------
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxx
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<-------
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
--------
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
xxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
<-------
GAMYB
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<---------
DEAR3(1)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<---------
RAP2.6(2)
<xxxxxxxxxxxxxxxxxxx
smallRNA(si3)
xxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
<xxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<---------
ATERF1(2)
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
<------
NtERF2
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
--------->
ALFIN1
<---------
WOX13(1)
xxxxxxxxxxxxxxxx>
smallRNA(i)
<--------
<------------
CBF
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<---
--------->
ATHB12
<---------
MYB46(3)
<---------
MYB46(3)
xxxxxx
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<---------
AtMYB61
----
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
--------->
ATERF1(1)
--------->
ZAT6
<---------
YAB1
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
<-------
<-----------
GT1
<-----------
GT1
xxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
<---------
DREB2C(2)
<----
-----
AGL15
----------->
GT1
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
<---------
ORA47(1)
<------
---->
AGL15
----------->
GT1
<----------
DOF2
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<---------
MYB46(3)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<---------
ANAC46
<------
NtERF2
agaaattaacactagagggtagtaaaattactaaattagtctttttgattggag
atggtagtggtggtgatggttgtggccggtggtggccggcggtggt
17093500
<---------
MYB46(3)
--------->
ALFIN1
<---------
AtMYB61
<---------
MYB46(3)
<---------
DEAR3(1)
<---------
MYB46(3)
<---------
AtMYB61
<---------
DEAR3(1)
<-------
GAMYB
<---------
ABI4(1)
<---------
MYB46(3)
--------->
ALFIN1
<---------
DREB2C(2)
<---------
DEAR3(1)
--------->
ALFIN1
--------->
ALFIN1
<------
NtERF2
------>
NtERF2
--------->
ATERF1(1)
--------->
LBD16
<---------
DEAR4(2)
<---------
LBD16
<---------
ATERF1(1)
--------->
PCF5
--------->
ATERF1(2)
--------->
ATERF1(1)
--------->
ATERF1(1)
xxxxxxxxxxxx>
smallRNA(se3)
<---------
AtMYB61
<---------
DEAR3(1)
xxxx
smallRNA(i)
<--------
P
--------->
PCF2
<---------
RAP2.6(2)
---
x>
smallRNA(i)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
<---------
AtMYB61
--------->
MYB55(2)
xxxx>
smallRNA(l2)
<------
MYB46(1)
--------->
MYB55(2)
<---------
LBD16
<---------
ATERF1(2)
<--
-->
MYB55(2)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<---------
DEAR3(1)
<------
NtERF2
<---
xxxxxxxxxxxxxx>
smallRNA(fl3)
<---------
AtMYB61
<---------
PCF5
<---------
ANAC58
----
--
DEAR3(1)
<---------
AtMYB61
<-------
GAMYB
<------
NtERF2
<---------
ANAC46
<----
->
ALFIN1
<---------
AtMYB61
<------
MYB83
<---------
AtMYB61
----------->
TCP11(1)
<---------
ABI4(1)
<------
xxxxxxxxxxxxxx>
smallRNA(se3)
--------->
ZAT14
--------->
ATERF1(1)
xxxxxxxxxxxxxxxx>
smallRNA(i)
xxxx>
smallRNA(i2)
--------->
ALFIN1
<---------
ANAC46
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
-------
xxxxxxxx
smallRNA(le3)
<-----------
RAV1(1)
<---------
MYB46(3)
<---------
DEAR3(1)
<------
NtERF2
<------
xxxxxxxx>
smallRNA(fl3)
<--------
P
<---------
ZAT14
<---------
AtMYB61
<---------
ANAC58
<---------
RAP2.6(2)
-
ABI4(1)
<xxxxxxxxxxxxxxxx
smallRNA(s)
--------->
ALFIN1
<---------
MYB46(3)
<---------
ORA47(1)
<-------
------
MYB46(3)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
--------->
ATERF1(1)
<---------
ORA47(2)
<------
xxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
--------->
ATERF1(1)
<-------
----->
MYB55(2)
--------->
ETT(1)
--------->
ALFIN1
--------->
ALFIN1
<---------
ATERF1(1)
<------
NtERF2
--
AtMYB61
--------->
MYB55(2)
------>
ZmHOX2a(2)
<-----------
RAV1(1)
--------->
MYB52(2)
<---------
DEAR3(1)
-----
ANAC46
<---------
MYB46(3)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<---------
MYB46(3)
--------->
ALFIN1
---
MYB46(3)
<---------
AtMYB61
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
--------->
MYB55(2)
<---------
AtMYB61
ggatggagttgatggtggtcggaagtgttggtgatcggtgtggtggttgctatg
gtggtggcccgcggtggtagtggccggcggtggtggtggtggccgg
17093600
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AGI:
At5g42630.1
Description:
ATS/KAN4 (ABERRANT TESTA SHAPE); DNA binding / transcription factor. similar to KAN (KANADI), transcription factor [Arabidopsis thaliana] (TAIR:AT5G16560.1); similar to KANADI-like transcription factor FEATHERED [Ipomoea nil] (GB:BAE73187.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding (InterPro:IPR014778); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447)
Range:
from: 17091007
to: 17093084
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At5g42635.1
Description:
glycine-rich protein
Range:
from: 17093455
to: 17093953
Orientation: Forward
Links:
TAIR
MIPS
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publications
when using AthaMap.
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