Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                          <-------GAMYB                                                                                       <------MYB46(1)              ------>NtERF2                                                            <------MYB83          --------->ANAC58                                                             xxxxxxxxxxxxxx          --------->ANAC58                                                             <---------DEAR3(2)      <------ZmHOX2a(1)                                                               <---------MYB46(3)    --------->LBD16                                                                   --------->MYB46(2)   --------->HSFB2a(2)                                                                <---------DEAR3(1)   <---------HSFB2a(2)                                                               <---------MYB55(1) ---->ZmHOX2a(2)              ---------->DOF2                                       <-----------HVH21 -------GLK1(1)   <---------CCA1(2)                                                 <---------MYB52(1) ------>GLK1(1)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              <-----------HVH21--------->MYB55(2) ----->ARR11(3) <---------ALFIN1        --------->ANAC46             <-----------TGA1<--------P ------ARR11(3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)          --------->ZAT6     --------->ZAT18 <-----   atctcccaggacatgcctccatctcttagacacaaagtctacaagagacatagcattccctaatactacatcgtcatgtagtgcccggtcggtagcgatc  12986200                                      --------->ANAC58                                      --------->ANAC58                        ------->GAMYB --------->ANAC55(2)                       --------->ANAC55(2)                       --------->ANAC58                       --------->ANAC58    --------->ANAC58     ------>ZmHOX2a(2)                       <---------ANAC55(2) --------->ANAC58    <------ZmHOX2a(2)                     --------->MYB52(1) --------->ANAC46      <---------ARR14(2)                 ----------------->AGL1 ----------->HVH21     --------->ARR11(3)               --------->ANAC58       --------->ANAC46        --------->ARR14(2)       --------->HSFC1(2)       <-----------HVH21             <---------ARR11(3)       <---------HSFC1(2) --------->MYB52(1)                  <---------ARR14(3)  --------->TOE2(3)       --------->HSFB2a(1)--------->ARR14(2)         --------->SPL7              <---------ZAT6 -----       <---------HSFB2a(1)<---------ARR14(2)        --------->MYB52(1)      <---------At4g35610 <---- xx>smallRNA(i)--------->ANAC58 <-------GAMYB<---------ALFIN1 --------->ARR14(3)<---------TOE2(3)---- -ZmHOX2a(2)  --------->SPL7   ----------->GT1     <---------SPL7 ------>ZmHOX2a(1)       <---------At4g35610   cagccccgagccttcgtatgccataacggaacggggttacacgcgacgcacagcatacggacgggatcctcatggttcggctaatgttagtcatctaatt  12986300                                                                                         <-----------GT1                                                                                     --------->AHL20(2)                                                                                     <---------AHL20(2)                                                                                   --------->TOE2(3)                                                                               --------->YAB1                                                                              <---------ATHB12                                                                            --------->WOX13(1)         --------->YAB1                        --------->ARR14(2)           <-----------GT1 --------- ---->AHL20(2)                                ------>ZmHOX2a(1)   <---------ATHB12 --------->ANAC55(2) -----AHL20(2)    ------->GAMYB         --------->MYB46(3)   --------->YAB1--------->AHL20(2) ------>DOF2   ----------->RAV1(1)      <---------MYB52(2) --------->ZAT14 <---------AHL20(2)       <   aaagactactaacatgacaacagactcatatactactatgcaactatcctatatgcaaaactatactaatcaaacaattaatcatacttaattaccacta  12986400    <---------MYB52(1)                                       ------>ZmHOX2a(1)           <---------ICU4    <--------P                                               <---------YAB1           <-----------GT1   --------->At5g28300                             <---------ARR14(2)                <---------AHL20(2)   <-------GAMYB                       --------->YAB1      ==========================================  <---------MYB46(3)                   <---------ICU4      ----------------->AG      --------->AHL20(2) <---------ANAC46                     <---------ATHB12     ----------------->AGL1<---------YAB1 >ZAT6--------->MYB52(2)           ------>ZmHOX2a(1)       --------->YAB1      --------->YAB1       - ---------LBD16           <-----------GT1<---------YAB1    <-----------------AGL1------>ZmHOX2a(1)  <   atcgcggttagtttccctaatctaggtttaactagtcctaatcatgcttagagaatactaatcctaattgggcatcactaatcctaattaactattacta  12986500            =========================================================================MADS_MADS            <-----------------AGL1            ----------------->AG           --------->MYB52(1)                 <------ZmHOX2a(1)            --------->YAB1              --------->At4g35610                  ----------->GT1      <-----------GT1                   <---------At4g35610                 <---------TOE2(3)       -     <---------AHL20(2)           --------->YAB1                       <---------YAB1   --------->YAB1     --------->AHL20(2)           --------->ATHB51                   --------------->AGL15  <--------  ------>MYB46(1)                 <--------HAHB4                  --------->ANAC58 --------->AHL20(1)  ------>MYB83------>ZmHOX2a(1)   <---------ICU4    <---------YAB1--------->ANAC58 <---------AHL20(2) =============================MADS_MADS<---------TOE2(3) <-----------GT1--------->YAB1--------->AHL20(2) -------->TOE2(3)                --------->AHL20(2) ------>ZmHOX2a(1)<---------------AGL15 --------->AHL20(2) ---------MYB59  <---------ATHB12--------->ICU4   --------->YAB1------>ZmHOX2a(1)  --------->AHL20(2)   aacctaattaactatcctaatcagggattaagcgaataattaagctaactaatcctaattaacctcctaagctataataaggaaataaaataataaacta  12986600                  --------->O2                  <---------ANAC55(2)                  --------->ANAC55(2)                  --------->ANAC46                  --------->TGA1a                  <---------TGA1a                <-------------DYT1              <-----------HVH21             --------->REM1(1)       <-------MYC3       <-------PIF4       <-------MYC2       ------->PIF4       <-------PIF5       ------->MYC4       <-------MYC4       ------->PIF5       ------->MYC2 ----------->HVH21      --------->ANAC55(2)                                <---------ANAC58      <---------TGA1a                               --------->ALFIN1 <---------At4g35610      ======================bZIP_bZIP               <---------MYB52(1)      <---------ANAC58                              --------->ARR14(2)     --------->LBD16      <---------ANAC58                              <---------ARR14(2)    --------->LBD16      <---------ANAC55(2)                         <---------MYB46(3) --------->At4g35610      --------->TGA1a                        <---------ANAC58    <---------ARR11(3)               <--    <-----------GT1<-------MYC3              <---------ANAC58    --------->ARR11(3)  <---------ANAC58 ----->ZmHOX2a(1) <---------O2           <---------GLK1(1)     <---------TOE2(3)     <---------ANAC58 ---GT1------->MYC3------->MYC3     *TSS<---------GLK1(2)<---------ANAC58<---------LBD16          ---   tcctattcacgtgctacttcacgtgactcaagtactcacatggattttcgagcggtttggcttctaaggtcttctcccgcgaactaggcgttttctagtg  12986700                                                                                           ----------                                                                                           --------->LBD16                                                                                          --------->ANAC58                                                                                          <------NtERF2                                                                                          --------->ANAC58                                                                                         <---------LBD16                                                                                        <---------ANAC46                                                                                        --------->PCF5                                                                                       --------->ATERF1(1)                                                                                       ----------->TCP11(1)                                                                   <------NtERF2       <------NtERF2                                                                 <---------DEAR3(1)  --------->ALFIN1                                                                 <<<<<<<<<<DREB1C --------->ALFIN1                                                                 <<<<<<<<<<DREB1B <---------AtMYB61 -                                                                 <<<<<<<<<<DREB1A<------ZmHOX2a(1) --                              --------->ZAT18                   --------->RAP2.6(3)<---------bZIP60(2)                              --------->ZAT14                --------->DAG2   <-----------RAV1(2) <--               --------->MYB46(3)                      <-----------HVH21    --------->ANAC46     ----            <------ZmHOX2a(1) <---------ZAT14         <------MYB46(1)       --------->ANAC58     ---- -------ARR14(2)              <---------ZAT18         <------MYB83<---------DEAR3(2)--------->ATERF1(1) ------>ARR14(2)     <----------ID1   <---------AHL20(2) --------->YAB1     --------->ANAC58    -----   gattttgggtctgaggaacaaatgggacgaagtggactatttatagggtcttaagtcggtcataaggtcggccaaaacaagcaggaggtggcccggacca  12986800                                 --------->LBD16                                <---------HSFB2a(2)                            --------->At4g35610                            <---------At4g35610                           <---------ATERF1(1)                          --------->ZAT18                        <-------PIF5                        ------->PIF5                      <---------LBD16                     <---------ALFIN1                    <---------REM1(2)                    --------->ZAT14       <---------HSFB2a(2)<---------ZAT18                                   --------->LBD16 ->HVH21   <---------ANAC55(2)  --------->HSFB2a(2)                        <---------HSFB2a(2) --------->DOF2     <---------ZAT14                                        <---------ANAC46 ------->YAB1     --------->ANAC46                             ------>ZmHOX2a(1)   --------->YAB1 -------ATHB12    --------->ANAC58xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    --------->HSFB2a(2) -->MYB83  --------->ANAC55(2)  <---------LBD16         <------MYB46(1)   <---------LBD16 -->MYB46(1)      --------->ANAC58----------->HVH21     <------MYB83 <---------AHL20(2) ---->WOX13(1)<-----------HVH21<---------LBD16       <---------MYB52(1) <-----------GT1   atcaaagttcgataagtgtcactccacgggcgctccgggacactaatcggtctccgattggtttcctccatttttttccggataaacatcatccaaaatg  12986900                                                                                               ------                                                                                               <-----                                                                                              <------                         <---------WRKY18(1)                                               --------->SPL7                      <------ZmHOX2a(1)                                                   <---------MYB52(1)                    <---------TOE2(3)                                                    <---------SPL7                <------ZmHOX2a(1)                               --------->YAB1      ------>ZmHOX2a(1)            ---------->DOF2                        --------->TOE1(3)                ----------->HVH21            --------->MYB52(1)   --------->ICU4    --------->TOE2(3)              <---------ICU4      <---------ALFIN1<---------ICU4<---------TOE2(3)      >>>>>>>>>GATA-1        --------->YAB1   aataagctcgaccctaaaggataaggatgaccagaattatggataagcttgagccttaatagataaacatgagccatagttcaatcctgaccgtccgttt  12987000                              <---------PCF5                             --------->ZAT14                             <---------ZAT14                       <-----------HVH21                     ====================================HOX2a_HOX2a                    =====================================HOX2a_HOX2a      --------->LBD16------>ZmHOX2a(2)      ------>NtERF2<---------ARR14(2)                   --------->ANAC58     <---------LBD16<------ZmHOX2a(2)                   --------->ANAC58    <---------LBD16<---------ARR11(3)        --------->YAB1                                 --------- --->ARR14(2)      --------->ARR14(2)        --------->ATHB12                        ----------->HVH21 ----ARR14(2) --------->TOE2(2)  --------->ANAC58       --------->ANAC46          <-------TEIL ---MYB52(1)  --------->TOE1(2)  --------->ANAC58 <------ZmHOX2a(1)      xxxxxxxxxxxxxxxx>smallRNA(s)   cttcattccggcgaaacccacgatctgtcactggaccgcaagagcattgataggactcactccatctccaatgtctcatgagggtccatgacataaatca  12987100  Previous    Next  AGI:  At5g34795.1    Description:  pseudogene, hypothetical protein Range:  from: 12986636    to: 12988066    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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