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AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                                                                     --------->ZAT14
                                                                     <---------ZAT14
                                                                     --------->ZAT18
                                                             xxxxxxxxxxxxxxxx>smallRNA(s)
                                                           xxxxxxxxxxxxxxxx>smallRNA(i)
                                                           xxxxxxxxxxxxxxxx>smallRNA(s)
                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                                                <---------ANAC58     <---------ZAT18
                                                <---------ANAC46   <xxxxxxxxxxxxxxxxsmallRNA(s)
                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
                                            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                                           xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)
                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)
                                       xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       <---------ANAC46
                                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
                                    <---------YAB1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      <------
                                   --------->TOE2(3)    xxxxxxxxxxxxxxxxxx>smallRNA(fl3)     <------
                                  --------->YAB1<---------ANAC58  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                                 <---------YAB1xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)--------->TGA1a
                                --------->ARR11(3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <xxxxxxxxxx
                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  ----
                    <---------AHL20(2) xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<---------At4g35610 <-------TEIL
                    --------->AHL20(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      <---------TGA1a<---
             <-----------GT1    <---------ARR11(3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ------->TEIL
---------->DOF2<---------YAB1  --------->YAB1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<xxxxxxxxxxxxxxxxx
 
ctgaaaagtatgtaagttactatttaaaattcaaatatcatcaataagatggagtgtctagggactggatagtgcagattactcatgtgtgtatgtgcgt  9722000
                                                                 --------->ARR14(2)
                                                                 <---------ARR14(2)            <----
                                                     <---------bZIP60(2)                       <----
                                                    <---------TOE2(3)                          <----
                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       <-----
 <---------MYB52(1)                               ----------->TGA1                      --------->ANAC58
---ANAC58                               <---------ZAT14         <------ZmHOX2a(1)       --------->ANAC46
---ANAC58                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              --------->ANAC58
xxxxxxxxxxxxxsmallRNA(s2)  <---------YAB1 <---------REM1(1)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
----->ARR14(2)            <---------TOE2(3)       ----------->HVH21 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
------ARR14(2)      <---------AHL20(2)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           --------->LBD16
xxxxxsmallRNA(i2)   --------->AHL20(2) xxxxxxxxxxxxxxxx>smallRNA(s)<-------TEIL    --------->ARR14(2)
 
attcgttatcacttggtctgcatttatttgatgtttgtctgagtgttgtaagtctgacgttgttagaggatacatatgagacatcgtttccacgaaattc  9722100
                                                                                                   <
                                                                                                 ---
                      --------->YAB1           ------>ZmHOX2a(1)                                <---
     ----------->GT1 <---------YAB1           <xxxxxxxxxxxxxxxxsmallRNA(s)                  <-------
-----ANAC58    <---------TOE2(3)       <----------DOF2    <---------ANAC55(2)               <-------
-----ANAC58 <---------AHL20(2)       <---------At4g35610  <----------ID1             ---------->DOF2
-----ANAC46<---------ICU4      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) --------->ARR11(3)--------------
--TEIL    --------->ICU4      <---------SPL7---------->ID1<---------YAB1          --------->MYB52(1)
 
gtgttcgagtgtaatttttatgttatgatatatcgtagggagcttttgtcctctacagattacgaaaaatagataatgtatagactaacaaagtacttta  9722200
                     <---------AHL20(1)
                     --------->AHL20(1)
                    --------->AHL20(2)
                  <---------------AGL15
               --------->AHL20(2)                 <---------AHL20(2)
    <---------AHL20(2)                            --------->AHL20(1)
   --------->AHL20(2)--------->ARR11(3)           <---------AHL20(1)
--------->ATHB12--------->AHL20(2)                --------->AHL20(2)                             <--
---------YAB1  <---------AHL20(2)                --------->AHL20(2) ----------->HVH21            <--
------>YAB1<---------AHL20(2)                <---------AHL20(2) <---------AHL20(2)         <--------
------YAB1 --------->AHL20(2)     <---------AHL20(2)    <---------TOE2(3)                  ---------
---DOF2 <---------AHL20(2)       <---------AHL20(2)  <---------ATHB51               <---------AHL20(2)
--DAG2 --------->AHL20(2)        --------->AHL20(2)  <---------AHL20(2)             --------->AHL20(2)
->AtSPL8<---------ICU4   ----------->GT1    --------->YAB1     <---------YAB1<-----------GT1   <----
 
ttatgatttaataaatatttaaaatatatagtaaaattaaatatgtataatattaaattatggattattatttgacatatttactatttaaaatttaaat  9722300
        <---------AHL20(2)
     <---------AHL20(2)
    <---------AHL20(2)        <-----------GT1                       <---------ARR11(3)
    --------->AHL20(2)      <---------AHL20(2)                      --------->ARR11(3)
   <---------YAB1     <---------AHL20(2)              --------->TOE2(1)
--------->ICU4        --------->AHL20(2)              --------->TOE1(1)
<---------YAB1      --------->AHL20(2)               --------------->AtSPL8   <<<<<<<<<MYB98
-------AHL20(2)  --------->AHL20(2)            <---------ICU4  --------->AHL20(1)
-------YAB1      <---------AHL20(1)         --------->YAB1     --------->AHL20(2)             <-----
-AHL20(2)        <---------AHL20(2)        --------->AHL20(2)  <---------AHL20(2)             <-----
>AHL20(2)        --------->AHL20(1)      --------->YAB1       --------->AHL20(2)  ---------->DOF2 <-
-----ICU4       --------->AHL20(2)----------->GT1    ------>ZmHOX2a(1)       ----------->GT1  <-----
 
attattattaaatatttgaataaatttatattttatctagttaaaaataaaaattcctcgtacaaaaaaattatcttatatgttaaaaagaaacaaggct  9722400
                                                                                            --------
                                                                                            ------>NtERF2
                                                                                         <---------ATERF1(1)
                                                                                      <-----------TGA1
                                                                                      <-----------HVH21
                                                                                   --------->ARR14(2)
        --------->GLK1(1)                                                    --------->ANAC58
     --------->LBD16                                                         --------->ANAC46 <-----
    --------->ANAC46                                                         --------->ANAC58 ------
    <---------ANAC55(2)                                           <-----------GT1  <---------ARR14(2)
    --------->ANAC55(2)                                         <-----------GT1--------->At5g28300
   <---------LBD16                                         ------>MYB83     <---------LBD16---------
----ANAC58                                                 ------>MYB46(1)<---------REM1(2)---------
----ANAC58                                               <---------MYB59 ------>ZmHOX2a(1) ---------
--------ANAC46   --------->ZAT14                   <---------At4g35610   <-----------HVH21--------->MYB46(3)
----ANAC46   --------->ZAT6*TSS   ----------->GT1  --------->At4g35610------>ZmHOX2a(1)  <---------At5g28300
 
tgtgtttacggaaataccactagactaaacacagacaaggtaaaaaaaaaaaacagcttaccaaatttttctcctccttcacggcaaatcgtcaccgcca  9722500
<---------ARR11(3)
->ABI4(1)
----ALFIN1                                                                    <---------TOE2(3)
----->RAV1(1)                                      ------>ZmHOX2a(1)          <---------TOE1(3)
>DEAR3(1)                                       ---------->ID1         <---------TOE1(3)
>ANAC46         --------->GLK1(2)      <---------AHL20(2)  ------>ZmHOX2a(1) <-----------RAV1(2)<---
>DREB2C(2)     <---------GLK1(2)     ----------------------->TaNAC69(2)<---------TOE2(3)    <-------
 
cattatctcccaaactaagaatctagggttttctaagggtttttaatcttcgtccttctctccttctccagttttaggtttcaggtttatctctcgtttc  9722600
                                                                                               <----
                                                                                        ============
                                                                                        ============
                                                                                        ------>ZmHOX2a(1)
                   <---------TOE1(3)                                                   --------->TOE1(3)
                <----------DOF2                                                        --------->TOE2(3)
               ------>ZmHOX2a(2)                                                    <---------ARR14(2)
     ------->TEIL  <---------TOE2(3)                                                --------->ARR14(2)
     --------->GLK1(2)                                                             <---------CCA1(2)
     <---------ARR11(1)                                                        <-----------HVH21----
     --------->ARR14(2) ----------->ARR10                                    <-------TEIL     ------
     <---------ARR14(2) --------->MYB52(2)                                 <---------ARR14(2) ------
    <---------CCA1(2) <---------MYB52(1)     <-----------GT1               --------->ARR14(2) <-----
    <---------ARR14(1)<--------P         <---------TOE2(3)                 <---------GLK1(2)  ------
-------DOF2  --------->ARR11(3)<---------ANAC58     >>>>>>>>>>>>>>>>>LFY--------->HSFB2a(2)   <-----
--CCA1(2)    <---------ARR11(3)<---------ANAC58   <----------DOF2       <---------HSFB2a(2)   <-----
 
tttcatcgaatcttttgatctttaggttagttttgcttctcgttgatgttactctttccattgttatctatggttctggattcgtcatatccttcacgat  9722700
      <---------LBD16
--ZmHOX2a(2)
==HOX2a_HOX2a
===HOX2a_HOX2a
-->ZmHOX2a(2)
--->ARR11(3)
--->ARR14(2)                                                              <---------GLK1(2)     >>>>
----ARR14(3)                                                     --------------->AtSPL8 <---------ANAC58
--->ARR14(3)                    --------->HSFC1(2)            <---------ATHB12          <---------ANAC46
----ARR14(2)         --------->YAB1                         --------->WOX13(1)          <---------ANAC58
----ARR11(3)       --------->ARR11(3)                    ----------------------->TaNAC69(2)    -----
 
cttcatgtttctgggtttttaaaatcatgctgcgaagtttcagtaatcgtgtctcagactcgtcaatctttgtacttgattctgaattgttgagtgtttg  9722800
                                       <--------P
                               <-----------RAV1(1)
                             <---------ZAT2                                        ----------->GT1
                             ----------->RAV1(2)                                   <------MYB46(1)
                             <---------At4g35610                                   <------MYB83
                             --------->At4g35610                                  --------->MYB111(2)
                         --------->ANAC46                                         <---------DEAR3(1)
                        <-------TEIL   <---------MYB52(1)                         <---------AtMYB61
                       --------->CCA1(2)                                          --------->MYB46(2)
                       --------->ARR14(1)                                         --------->MYB55(2)
                      --------->ARR14(2)  <---------ANAC58                        --------->MYB111(1)
                      --------->ARR11(1)  <---------ANAC58                        <---------MYB46(3)
                      <---------ARR14(2) --------->ATHB12                        <--------P
                  <---------ANAC58    <-------GAMYB                              <---------MYB55(1)
                  <---------ANAC58   <---------MYB46(3)                --------->GLK1(2)
                  <---------ANAC46  <---------RAP2.6(2)                --------->ARR14(2)
             <---------At4g35610    <---------DEAR3(1)       <---------ARR14(2) <-------GAMYB-------
             --------->At4g35610   <---------ZAT18           --------->ARR14(2)--------->MYB55(2)
<-----------RAV1(1) ----------->ARR10----------->GT1         --------->GLK1(2) <---------MYB46(3)
=======================RAV   --------->ZAT2<---------WOX13(1)<-----------ARR10<---------TOE2(3)
>>>>>ARR2  ================================RAV              <---------CCA1(2) <---------AtMYB61
---->ATHB12<-----------RAV1(2)<---------ANAC46   ------>ZmHOX2a(1)     <---------ARR14(2)    <------
 
attgtgttgcagtttcagatggcgagatacgctgctggtgcggttgattgtcctggttctcccaaatctgtgcgaatcgttgtggttggtgataagggca  9722900
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AGI:  At5g27540.1   
Description:  EMB2473 (EMBRYO DEFECTIVE 2473); GTP binding. similar to GTP-binding protein-related [Arabidopsis thaliana] (TAIR:AT3G63150.1); similar to GTP-binding protein-related [Arabidopsis thaliana] (TAIR:AT3G05310.1); similar to ATP/GTP/Ca++ binding protein [Cucumis melo] (GB:ABR67417.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17628.1); similar to hypothetical protein OsJ_012497 [Oryza sativa (japonica cultivar-group)] (GB:EAZ29014.1); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Small GTP-binding protein; (InterPro:IPR005225); contains InterPro domain Miro-like; (InterPro:IPR013684); contain
Range:  from: 9722428    to: 9727457    Orientation: Forward
Links:  TAIR  MIPS 
 
 
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