Home
Tools
- Search
- Colocalization
- Gene Analysis
- Gene Identification
- Small RNA Targets
- MicroRNA Targets
Description
Documentation
Citations
Downloads
Publications
History
Contact
Links
Disclaimer
For complete usage of AthaMap please enable JavaScript in the settings of your browser!
Search
Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
Go to graphical and table display
1 10 20 30 40 50 60 70 80 90 100
-
<-
<--
--------->
TOE2(3)
--------->
MYB46(3)
--------->
YAB1
--------->
TOE2(3)
----
--------->
YAB1
----------->
GT1
<---------
CCA1(2)
-------
----------->
GT1
--------->
AHL20(2)
<---------
MYB52(1)
---------->
DOF2
-------
cagattaaaacagagcaaaacatagaaaaattcaaaaaacacaaataaaaatcaaaactttcgttaattcaaatcaaatctcaaaggaacaacaacactc
9160000
--------->
ANAC46
--------->
ANAC58
--------->
ANAC58
<---------
ZAT18
---------->
DOF2
--------->
At4g35610
============================
HOX2a_HOX2a
----------->
GT1
<------
ZmHOX2a(2)
--------->
ZAT14
-------->
LBD16
--------->
At4g35610
--------->
MYB52(1)
--------
LBD16
------>
ZmHOX2a(1)
--------->
DAG2
----------->
HVH21
-------
LBD16
--------->
LBD16
--------->
ANAC46
--------->
LBD16
----->
MYB52(1)
----------->
RAV1(2)
---------->
DOF2
<---------
At4g35610
----
-->
ANAC58
----------->
GT1
<---------
ARR11(3)
<---------
LBD16
-------
-->
ANAC58
----------->
GT1
--------->
ARR11(3)
--------->
TOE2(3)
<-----------
GT1
----------
ac
cgggatcacaaagtcggaaaaactcctgaacat
ctgcacacacaaaagggtaatctcaaaattcagtttttttccggtgacaaaactgagatagtaat
9160100
--------->
AGP1
<---------
ZAT2
<---------
At4g35610
--------->
At4g35610
--------->
YAB1
<
<---------
ATHB12
<--
----------->
GT1
--------->
TOE2(3)
--------->
TOE2(3)
<---
---------->
DOF2
---------->
DOF2
--------->
ZAT2
<--------
----->
YAB1
<---------
MYB46(3)
------>
NtERF2
---------
-->
YAB1
----------->
GT1
<---------
ICU4
--------->
TOE1(3)
<--------
->
GT1
<-----------
GT1
--------->
TOE1(3)
--------->
ANAC46
<---------
ALFIN1
<--------
aagaagaaagaaaaaacaaattgttac
cagtggttaaagccttaatcatgccagctctacgacccttaaaatccctaaacacctcttcaacagtgcgtgg
9160200
<-------
PIF5
------->
PIF5
<---------
ZAT2
<---------
At4g35610
----------->
RAV1(2)
--------->
ATERF1(1)
<------
NtERF2
--------->
DEAR4(2)
<-----------
HVH21
<---------
ATERF1(1)
------>
NtERF2
--------->
ANAC58
--------->
ANAC58
--------->
ANAC46
<
--------->
ANAC46
<----
---------
SPL7
------
-------------
AtSPL8
--------->
ZAT2
------
------
ANAC46
--------->
MYB52(1)
--------->
ANAC58
--------->
ANAC58
-
ANAC58
------>
NtERF2
<----------
DOF2
--------->
At4g35610
--------->
ANAC58
-------------->
TaNAC69(2)
--------->
MYB46(3)
--------->
ANAC58
--------->
ANAC55(2)
-
ANAC46
--------->
DEAR3(1)
<---------
HSFB2a(2)
<----------
ID1
--------->
CCA1(2)
-
ANAC58
<---------
ALFIN1
--------->
HSFB2a(2)
<------
ZmHOX2a(1)
---------->
DOF2
<----------
ID1
<-
attgtacgcgccacctgcttccat
ctttcttacagaacaaacagcttcgaaggagacaagacaagagtgaaagagagagagagagagagacaagtatttg
9160300
--------->
ARR14(2)
--------->
ANAC58
<------
NtERF2
--------->
PCF5
<----------
CDC5
<---------
ARR14(2)
------>
NtERF2
--------->
ARR14(2)
--------->
At4g35610
------>
NtERF2
<---------
At4g35610
--------->
ATERF1(1)
*
TSS
<---------
DEAR3(1)
<------
NtERF2
<---------
AHL20(2)
--------->
RAP2.3(1)
<---------
TCP16(2)
--------->
AHL20(2)
---------
ATERF1(1)
--------->
DAG2
<---------
At4g35610
-----
WRKY18(1)
<---------
ANAC58
---------->
DOF2
<---------
SPL7
<---------
LBD16
--->
WRKY12
--------->
GLK1(2)
---------->
DOF2
<----------
ID1
--------->
ANAC58
--------->
ARR14(2)
----->
HVH21
<---------
ARR14(2)
---------->
DOF2
---------->
DOF2
---------->
DOF2
<------
ZmHOX2a(1)
--------
DEAR3(1)
<---------
ANAC58
----------->
HVH21
<---------
ATERF1(1)
<---------
ARR14(2)
<---
accggcgctgagagaatttgggtttgcgagagaaagaaagatgtgaaagagaaaaagggcggacccaaaaacaattaagcggattt
aataagatgaggag
9160400
--------->
GLK1(1)
--------->
ARR14(2)
<---------
ARR11(1)
<---------
ARR14(2)
------->
TEIL
<-----------
ARR10
<---------
CCA1(2)
--------->
ANAC55(2)
<---------
ANAC55(2)
<---------
ANAC46
------>
ZmHOX2a(2)
=======================
HOX2a_HOX2a
<------
ZmHOX2a(2)
========================
HOX2a_HOX2a
--------->
GLK1(2)
<---------
ARR14(2)
-------
------->
TEIL
--------->
ARR14(2)
<---------
MYB46(3)
--------->
LBD16
<---------
ARR11(3)
<-------
GAMYB
<------
NtERF2
--------->
ARR11(3)
<-----------
RAV1(1)
--------->
ANAC58
--------->
ANAC58
--------->
AGP1
------>
ZmHOX2a(1)
--------->
ANAC58
--------->
ANAC58
<---------
AGP1
=====================
RAV
<---------
LBD16
--------->
ZAT18
===============
HOX2a_HOX2a
--------->
GLK1(1)
<---------
ZAT18
<------
ZmHOX2a(1)
==============
HOX2a_HOX2a
<---------
GLK1(1)
--------->
ZAT18
<------
ZmHOX2a(1)
------>
ZmHOX2a(1)
<---------
ARR14(1)
<-------
---
ZmHOX2a(1)
--------->
At4g35610
<-----------
GT1
<---------
CCA1(2)
----------->
RAV1(2)
gagtccgcaaaatgaatctgatgaggaggagagcacgataagttttatctttcatcctcttagatcttgacgcgtatctcctgatttctgttgttgtatc
9160500
---------
--------->
AHL20(1)
<---------
AHL20(1)
--------->
AHL20(2)
--------->
TOE2(3)
<---------
WOX13(1)
<-------
TEIL
--------->
ATHB12
<---------
LBD16
--------->
YAB1
<---------
GLK1(1)
<---------
ANAC46
-------->
HAHB4
<--
--------->
ARR14(2)
<---------
ANAC58
<---------
YAB1
<---
<---------
ARR14(2)
<---------
ANAC58
<---------
TOE2(3)
----
>
TEIL
<---------
AHL20(2)
<---------
ANAC46
<---------
ZAT6
<---------
AHL20(2)
--
CCA1(2)
<---------
YAB1
<---------
LBD16
<---------
ANAC46
--------->
AHL20(2)
tatggatatgtttttaattggattggcttatttttcgggtaatagatgtttatcaagcttgaaattaagagttttgtgttaatgatacattaaattgtaa
9160600
<-----------
GT1
--------->
WRKY12
----------->
HVH21
<---------
AHL20(1)
--------->
AHL20(2)
--------->
AHL20(1)
<---------
AHL20(2)
--------->
TOE1(2)
<----------
DOF2
--------->
At4g35610
<---------
MYB52(1)
--------->
ARR14(2)
<---------
At5g28300
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
<---------
ARR14(2)
<xxxxxxxxxxxxxxxx
<---------
CCA1(2)
xxxxxxxxxxxxxxxx>
smallRNA(i)
--------->
GLK1(2)
--------->
AHL20(2)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
<---------
MYB52(1)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
<---------
ARR14(2)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
>
YAB1
--------->
ARR14(2)
xxxxxxxxxxxxxxxxx>
smallRNA(fl3)
<---------
-------
MYB46(3)
<---------
GLK1(2)
<------
MYB83
<---------
At4g35610
xxxxxxxxxxxxxx
------
YAB1
--------->
AHL20(2)
<------
MYB46(1)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
----->
ICU4
<---------
AHL20(2)
<-----------
GT1
--------->
MYB59
xxxxxxxxxxxxxxxx>
smallRNA(i)
<x
tggttgtaagattgcagaaagttttattagatactctgttttttcgaaacaaatgttcggtaatctggtatctgcgaaataaatttgaccgtttttctgt
9160700
<------
MYB46(1)
--------->
MYB59
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
<---------------
AtSPL3
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxxxxxx>
smallRNA(i)
----------->
HVH21
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(s2)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<---------
MYB52(1)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<---------
At5g28300
--------->
At5g28300
<--------
P
<---------
AHL20(2)
<---------
LBD16
--------->
GLK1(2)
--------->
AHL20(2)
xxxxxxxxxxxxxxxx>
smallRNA(i)
--------->
AHL20(1)
xxxxxxx
smallRNA(fl3)
----------->
GT1
--------->
WRKY12
--
GT1
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<-----------
GT1
<----------
DOF2
<-
xx>
smallRNA(i)
<------
MYB83
<---------
AHL20(1)
<----------
DOF2
<-
xxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
--------->
AHL20(2)
<---------
YAB1
<-------
TEIL
ttttcgcggtaaatgttcggtaatctggtaactcagaaataaatttgaccgttttctatattttcattcgcgctctttttgaacatggtaagggatacat
9160800
--------->
AHL20(2)
xxxxxxxxxxxxxx
<--------
P
<----------
DOF2
<---------
At4g35610
<---------
TOE2(3)
<---------
MYB52(1)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<---------
YAB1
<---------
ARR14(2)
---------->
ID1
--------->
GLK1(2)
<--
---------
DOF2
--------->
ARR14(2)
<-----------
GT1
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
--------
DAG2
<---------
ZAT6
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
<---------
TOE2(3)
actttattttagattagtgagaggtttcggtaagtgtttatcaaatattcagtttttcgctttaaatttcggtaatctgatatttaagaaataagtttga
9160900
Previous
Next
AGI:
At5g26210.1
Description:
PHD finger family protein. Identical to PHD finger protein At5g26210 [Arabidopsis Thaliana] (GB:O81488;GB:Q8LBJ5); similar to PHD finger family protein [Arabidopsis thaliana] (TAIR:AT3G42790.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43863.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011)
Range:
from: 9158321
to: 9160386
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
printer-friendly version