Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                              <----------DOF2                                                   ------>ZmHOX2a(2)                                                  =============HOX2a_HOX2a                                                  <------ZmHOX2a(2)                                                 <---------AGP1                                                 --------->ARR14(3)                                                 --------->AGP1                                                 <-----------ARR10        <---------ICU4                           <---------ARR14(3)        --------->YAB1                           <---------ARR14(2)       <---------YAB1                            --------->ARR14(2)    --------->ICU4                               <---------ARR11(3) -------DOF2                                     --------->ARR11(3)                           <------ ->RVE1(1)                              <----------DOF2 <------ZmHOX2a(1)                     ------- -ARR11(3)                          =====================HOX2a_HOX2a            --------->At4g35610 < >ARR11(3)      --------->ICU4      ======================HOX2a_HOX2a           <---------At4g35610<- >GLK1(2)     <---------ICU4        ------>ZmHOX2a(1) <---------TOE1(2)         <---------ZAT2<------   tttgacataatcatagtaatgactaatccatttccctcctctctttcccaagatcttaggaacttttgaaacaatctctgtaagctcagagcttgaagct  8075600          --------->ANAC58                           --------->YAB1          --------->ANAC58                      <---------YAB1                                 ------   <---------TOE1(3)                        <---------ARR14(2)                                 <----- ---ZAT2  --------->ANAC46                  --------->ARR14(2)         ----------->GT1         ------ -->At4g35610                            <---------TOE1(2)         --------->MYB111(1)         <----- ---------MYB52(1)                      <---------LBD16           <--------P --------->YAB1    ------ ------GAMYB               --------->ANAC58 <---------GLK1(2)  <---------TOE1(2)              <------ ---At4g35610              --------->ANAC58<------ZmHOX2a(1)  <---------ANAC46          --------->CCA1(2)   ccgttaagcttcaagaaatgaagtttagcacgaagagttttctcaggattctcaatgagaaatcgtgggtaagtggaaataatacttgagatttgagaat  8075700                                                                           <---------WOX13(1)                                              <----------DOF2           <---------YAB1 --->ARR11(3)                     --------->ARR14(2)                    <---------TOE2(3) ----ARR11(3)                     <---------ARR14(2)               --------->ATHB12 --->GLK1(2)                      ------->TEIL<---------DAG2      <---------YAB1 ----ARR14(2)                     --------->GLK1(2)             <----------DOF2 --->ARR14(2)                    <---------GLK1(2)            --------->At4g35610 ---GLK1(2)             ---------->DOF2      <---------DAG2   <---------At4g35610                   -   ctttgaatccatagcttcttaagagtttaagcactgaatctggattacctttttcatcgaagttagctttcattgagattgattcagcgagttttgtagt  8075800                                                                              ----------->GT1                                                                     <----------DOF2                                                                    ------>ZmHOX2a(2)                                                                   <------ZmHOX2a(2)                <---------TOE2(3)                                 --------->ARR11(3)                <---------TOE1(3)                                 <---------AGP1                --------->DAG2                <---------ANAC58    <---------ARR11(3)         ------->TEIL                         <---------ANAC58    --------->AGP1      <---------ATHB12                     <----------DOF2       <---------CCA1(2)  --------->MYB52(1) --------->TOE1(3)                       =================================HOX2a_HOX2a          <----- --------->TOE2(3)                       ------>ZmHOX2a(1)      ----------->ARR10  --------->MYB46(3) -------->ZAT6  --------->MYB59          ==================================HOX2a_HOX2a ------->GAMYB   taaccctaatgaatcaataaggtaagagactgtgaaagttttcctctttcgttcatcttcaagacttagatctttagtagtagtaacaacggaagagaac  8075900                                           --------->LBD16                                           ------>NtERF2      ----------->HVH21                                          --------->ANAC46  <---------ANAC58                                       --------->ARR14(2)   <---------ANAC46                                       <---------ARR14(2)   --------->TGA1a                                       --------->GLK1(2)    <---------ANAC55(2)                                      <---------ARR14(2)    <---------TGA1a                                      --------->ARR14(2)    --------->ANAC55(2)                                      <---------GLK1(2)     <---------O2                                     <---------At4g35610    <---------ANAC58              --------->YAB1                                  <-------TEIL              --------->O2                <---------TOE2(3)               <------ZmHOX2a(1) --------->CCA1(2)    ------->TEIL                    --------->ICU4      ---------->DOF2           --------->ARR14(2) <---------REM1(1)                 <---------YAB1 ----------------WRI1           <---------ARR14(2)<---------TOE2(3)              <---------ANAC46----   gattcagtgaaagcagaggagttttggagaagaagattcagattccgccattgatgtaactcgcgtgaccttcttccaccatggagtattaatgaaaaca  8076000                                     <------ZmHOX2a(2)                                     ------------>CBF                               <------MYB83                                               <------NtERF2                              <---------MYB46(3)                                         ------>NtERF2                             --------->ALFIN1                        --------->ICU4     <---------DEAR3(1)                          --------->DAG2                           <---------At4g35610  --------->ANAC46     <----------DOF2   ---------->DOF2 --------->WOX13(1)       ------->GAMYB------------>CBF    ---- ----->ICU4     ---------->DOF2<------MYB46(1)               --------->MYB52(1)        --------->RAP2.6(3)   tgatgagatttatggagagaaaggagaaagagtgggtcgatcaatctgaaaatgctctgtttttaacggagatgatgaagacaatgaacgacggcagaac  8076100                                         <------ZmHOX2a(1)                                <---------AHL20(2)                                --------->AHL20(2)                                --------->ATHB51                                                 <---                                <---------ICU4                                                   ----                <---------TOE2(3)      <---------TOE2(3)                                         ----            <----------DOF2    --------->ICU4--------->GLK1(2)                                  <----       <---------WOX13(1)   <---------AHL20(2)                       ------------>CBF           <----      <------------CBF      --------->AHL20(2)                      --------->TOE2(3)           <----     --------->ATHB12      --------->AHL20(2)--------->ICU4        --------->YAB1              ------ ----->TOE1(2)  <---------TOE1(3) <---------YAB1<---------YAB1--------->AHL20(2)         ---------->DOF2   ataagactgattgtctttagggttttagatttaattatttttaggaaattcttattaacaaaaaaaaaatcatcaatttgagtttgtaaaccaaagttgt  8076200         --------->TOE2(3)         --------->TOE1(3)      <-----------GT1 ----------->GT1 <---------ZAT6 ------ZAT14 ----->ZAT18                               <------------CBF ----->ZAT14                           --------->YAB1                                             <-- -----ANAC58                           <-----------GT1       <---------WOX13(1)          <-----------GT1 -----ANAC58                          --------->MYB46(3)    <------------CBF         <---------AHL20(2) -----ANAC46 --------->REM1(1)<----------DOF2              --------->ATHB12         <---------AHL20(2) --------->AtSPL8     <---------MYB46(3) <---------YAB1   <---------YAB1            --------->AHL20(2)   gtactgtttaaccttacaccagagtggtttagctttggtaatcaccattgaagatagatagtgattgggttttagagattagcaaattaaataacaaatt  8076300         --------->ZAT14        <---------MYB52(1)   --------->ARR14(2)                                               -------        <-----------HVH21    <---------ARR14(2)                 <---------AHL20(2)     --------->TOE1(3)        --------->DOF5.7(2)  <---------GLK1(2)                  <---------YAB1         --------->TOE2(3)   <-----------GT1 ----------->GT1                          <----------DOF2         ------->TEIL <-----------GT1  ----------->GT1      <---------ICU4     ---------->ID1         --------->ANAC46  <- -------YAB1    ---------->DOF2       <---------YAB1     <-----------GT1----------->RAV1(1)<---------   atgttacaccgttcacttgaaagttaaaacagatttgataacaattgcattaactaatttttcttttttattgacaacagtacatgaaactttaaacaac  8076400                                                                                       --------->WOX13(1)                                                                            --------->ANAC58 <-------PIF5                                                                            --------->ANAC58 ------->PIF5                                                                          <---------ALFIN1------->GAMYB                                                --------->ANAC46     ------->GAMYB --------->YAB1 ---->RAV1(1)                <---------YAB1   --------->ANAC46  <---------MYB52(2)<---------YAB1    - --------ICU4              <-----------GT1------>MYB83  <---------YAB1----------->RAV1(1)--------->MYB46(3) --GT1                  <---------ICU4    ------>MYB46(1)--------->YAB1 <---------ALFIN1-------->P  <   ataagtactaaaaaaccatggtccaaatattacaattccaaaccaaacacactacataatcatacaaataacccacacacgcttattatcaaccacgagc  8076500  Previous    Next  AGI:  At5g23930.1    Description:  mitochondrial transcription termination factor-related / mTERF-related. similar to mitochondrial transcription termination factor-related / mTERF-related [Arabidopsis thaliana] (TAIR:AT3G46950.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40592.1); contains InterPro domain Mitochodrial transcription termination factor-related (InterPro:IPR003690) Range:  from: 8074628    to: 8076001    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g23940.1    Description:  EMB3009 (EMBRYO DEFECTIVE 3009); transferase. similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT5G01210.1); similar to putative acyltransferase [Clitoria ternatea] (GB:BAF49303.1); contains InterPro domain Transferase (InterPro:IPR003480) Range:  from: 8076332    to: 8079796    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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