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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
---
<-----------
GT1
--------->
MYB52(1)
-----
--------->
ANAC58
--------->
YAB1
<---------
TOE2(3)
--------->
ANAC58
<----------
DOF2
<------
ZmHOX2a(1)
<---------
TOE1(3)
gtgagtgtcgatttggacaagcctatgttaccatctcaactttgcatattcaaaatcaggaataactgaaacagcttgagagcatacttaaggctagaga
6942500
--------------->
AGL15
<---------
ALFIN1
--------->
ARR11(3)
--------->
GLK1(2)
<---------
ARR11(3)
--------->
AHL20(1)
--------->
RVE1(1)
--------->
AHL20(2)
----------->
GT1
<---------
At4g35610
<---------
HSFB2a(2)
====================================================
-------->
P
--------->
HSFB2a(2)
<---------------
AGL15
--------->
DAG2
<---------
ANAC46
--------->
At4g35610
---------->
DOF2
<---------
ANAC58
--------->
ARR14(2)
<---------
AHL20(2)
-------->
GT1
<---------
ANAC58
<---------
ARR14(2)
--------->
AHL20(2)
--------->
YAB1
------>
GT1
<-----------
HVH21
--------->
CCA1(1)
---------->
DOF2
<-----------
ARR10
gagaaaaaagctaac
cagggtcgcattgctggaaaaaatcttccacat
ctgcaaaaaaaagaaattaattgttcttaattcgaagaactaagcatcatca
6942600
--------->
YAB1
------>
MYB46(1)
------>
MYB83
--------->
MYB52(1)
--------->
MYB55(1)
<---------
MYB46(2)
<---------
MYB52(2)
<---------
MYB111(2)
--------->
AtMYB61
<---------
MYB111(1)
--------->
MYB46(3)
<---------
MYB55(2)
--------->
ANAC58
--------->
ANAC58
------>
NtERF2
--------->
RAP2.6(2)
--------->
ANAC46
<---------
ZAT18
----------------->
AGL3
------>
ZmHOX2a(2)
--------->
ANAC58
--------->
ZAT18
===============================================================
---------->
DOF2
--------->
DAG2
--------->
ANAC58
--------->
GLK1(1)
--------->
ZAT6
---------->
DOF2
--------->
ANAC58
<---------
GLK1(1)
--------->
TOE2(3)
<---------
MYB46(3)
---------->
DOF2
<------
ZmHOX2a(2)
--------->
ANAC58
=======================================================
MADS_MADS
<---------
YAB1
--------->
LBD16
acacaatccataacactagagcacaattgttgaaaaagggtctaaataaagccaccaaacgatcgtcatgagaagaattcccacgaaaaactcaaaaccc
6942700
---------->
DOF2
--------->
ANAC58
------------------------>
ANAC81
------>
NtERF2
--------->
ANAC58
--------->
ANAC46
--------->
DAG2
<---------
DEAR3(1)
--------->
TOE2(3)
<---------
ZAT2
<----------
DOF2
--------->
At4g35610
<---------------
AGL15
<---------
ZAT2
<---------
At4g35610
-------
--------------->
AGL15
--------->
ARR11(3)
--------->
RAP2.6(3)
--------->
TOE1(3)
---------->
DOF2
<---------
MYB46(3)
--------->
ZAT2
<---------
HSFB2a(2)
---------->
DOF2
---------->
DOF2
--------->
ALFIN1
------>
NtERF2
<---------
ARR11(3)
==============================
MADS_MADS
<<<<<<<<<<<<<<<<<
LFY
<---------
bZIP60(1)
--------->
ARR11(3)
ataagaaaagtttcaaactttaaaaagcaaagagaagaaagaagagac
cagtggtgagagcttggatgatgccagctcgacggcccttaaaatctcgaaa
6942800
--------->
ARR14(2)
<---------
ARR14(2)
--------->
GLK1(1)
----------->
ARR10
--------->
ZAT18
<---------
ZAT18
<---------
ZAT18
---------->
DOF2
--------->
ZAT18
<---------
ARR14(2)
<---------
ZAT14
--------->
ARR14(2)
<---------
ZAT14
<---------
LBD16
<-----
--------->
ZAT14
------>
ZmHOX2a(1)
------>
ZmHOX2a(1)
<---------
ANAC58
----------->
HVH21
--------->
ZAT14
<---------
CCA1(2)
<---------
YAB1
<---------
ANAC58
--->
DOF2
<----------
DOF2
------>
ZmHOX2a(1)
<-----------------
AGL1
<---------
TOE2(3)
gacttcttcgacagttcgagggctgtagtgcgcagttcctccttccat
gtccgtctctcctctctcggaaacgatgaaagaacagtgaggtttgcttctt
6942900
------>
MYB83
-------->
P
------>
MYB46(1)
--------->
REM1(2)
--------->
ETT(2)
----------->
HVH21
<---------
ETT(2)
--------->
LBD16
------->
PIF5
--------->
MYB46(3)
<-------
PIF5
--------->
DEAR3(1)
--------->
TOE2(3)
<---------
O2
----------->
HVH21
----------->
GT1
--------->
O2
<---------
MYB59
--------->
DAG2
--------->
DAG2
--------->
DEAR3(2)
---------->
DOF2
--------->
ANAC55(2)
---------->
DOF2
----------->
HVH21
<--
-----
DOF2
*
TSS
<---------
GLK1(2)
---------->
DOF2
---------->
DOF2
<---------
ANAC46
--------->
LBD16
ttttttttct
aaagcagaatttttgttcttaagtgataaagtaagaaaacttaatgcagactaaaaagttgccccgtggacagtgaccgacccggtctag
6943000
<---------
ANAC46
<------
MYB46(1)
<---------
ANAC58
<------
MYB83
<---------
ANAC58
<----------
DOF2
<---------
ANAC46
<---------
ANAC55(2)
<---------
ANAC58
<-------
TEIL
<---------
ANAC58
--------->
AHL20(2)
--------->
YAB1
--------->
MYB111(2)
--------->
YAB1
--------->
MYB52(1)
<---------
ANAC58
--------->
AHL20(2)
--------->
YAB1
<---------
TOE1(2)
--------->
AHL20(2)
<---------
AHL20(2)
<---------
ANAC58
<---------
ZAT6
<---------
AHL20(2)
<---------
ATHB51
--------->
ARR11(3)
<---------
AtMYB61
---------
GT1
--------->
YAB1
--------->
YAB1
<---------
ICU4
--------->
MYB46(2)
--------->
YAB1
tcacaacacttatttaaaaataaaaatacataaataatggacattaataatgtcttcgtgcgtttagtttggtgttatctcattttcaaacataatcaag
6943100
<---------
ALFIN1
--------->
TGA2(2)
<---------
ANAC55(2)
--------->
ANAC58
--------->
ANAC46
<------
NtERF2
----------->
HVH21
<-----------
GT1
----------->
GT1
<---------
YAB1
--------->
YAB1
--------->
YAB1
--------->
HSFB2a(2)
<---------
YAB1
--------->
ANAC55(1)
--------->
YAB1
<-
<---------
HSFB2a(2)
--------->
AHL20(1)
<---------
ICU4
<---------
AHL20(2)
<-
<---------
ANAC46
<---------
ICU4
--------->
ANAC58
--------->
CCA1(2)
<----
--------->
ETT(1)
--------->
ICU4
--------->
ANAC55(2)
<---------
ARR11(3)
<------
<---------
LBD16
--------->
GLK1(1)
<---------
WOX13(1)
--------->
ARR11(3)
<----------
DOF2
tttgtcgggaaaaaaactactctacagatttcataaatattatgaatgacagacg
taatcaacacattcaagatataatcatataaccatgtcttttttc
6943200
----------->
RAV1(1)
<---------
At4g35610
--------->
LBD16
--------->
At4g35610
<---------
ARR11(3)
<------
ZmHOX2a(2)
------>
MYB83
--------->
ANAC58
<------
ZmHOX2a(1)
------>
MYB46(1)
--------->
ANAC58
====================
HOX2a_HOX2a
--------->
MYB46(3)
<---------
ATHB12
--------->
ARR11(3)
<---------
YAB1
----------->
RAV1(1)
--------->
WOX13(1)
--------->
YAB1
<-----------------------
TaNAC69(2)
---------
DOF2
<xxxxxxxxxxxxxxxxxx
smallRNA(se3)
===========================
RAV
--------
DAG2
---------->
DOF2
<---------
HSFB2a(2)
==============================
RAV
-------
GT1
--------->
At4g35610
--------->
HSFB2a(2)
<-----------
RAV1(2)
----------->
GT1
-----
-----
GT1
--------->
YAB1
--------->
ICU4
<-----------
GT1
--------->
AtMYB61
--------->
AHL20(2)
acttttctcaatcatctacaaagccatgatcatccagaggaaatagttacgatcagatgagaaacaccaacaacaattggaaaaaaaataacccaaaaaa
6943300
<---------
At4g35610
--------->
At4g35610
<---------
At4g35610
<---------
ARR14(2)
--------->
ARR11(3)
--------->
At4g35610
--------->
ARR14(2)
<---------
ARR11(3)
------->
TEIL
--------->
ZAT6
--------->
ZAT2
<----------
<-------
TEIL
<---------
ANAC58
--------->
STY1(2)
------>
ZmHOX2a(1)
--------->
ANAC58
<---------
ANAC58
<---------
ZAT2
---------->
DOF2
<---------
CCA1(2)
----->
DOF2
--------->
ANAC58
--------->
At4g35610
<---------
STY1(2)
--------->
ARR11(3)
aagaaggaaaactgagacgaagcaaatgcatctgattagcttacacttgccatctccactagctggttctgcttacaaaagttcctgtccaatatctcac
6943400
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AGI:
At5g20510.1
Description:
PHD finger family protein. similar to PHD finger family protein [Arabidopsis thaliana] (TAIR:AT3G42790.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45651.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011)
Range:
from: 6939815
to: 6942910
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At5g20520.1
Description:
WAV2 (WAVY GROWTH 2). similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G13610.1); similar to unknown [Populus trichocarpa] (GB:ABK94077.1); contains InterPro domain Alpha/beta hydrolase fold-1 (InterPro:IPR000073)
Range:
from: 6943156
to: 6946456
Orientation: Reverse
Links:
TAIR
MIPS
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publications
when using AthaMap.
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