Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                            <---------ICU4                                          --------->YAB1                                         <---------ATHB12                                       --------->WOX13(1)   --------->GLK1(2)                                 <---------ANAC58     <---------ANAC46                                 <---------ANAC58    <-----------------------TaNAC69(2)                               <-----------GT1     ----------->HVH21                               <---------AHL20(2)  ----------->TGA1          <---------MYB52(1)    --                          <---------AHL20(2)    --------->DAG2             ------>ZmHOX2a(2)       <-          ---------->DOF2 --------->AHL20(2)   ---------->DOF2         <---------YAB1          <----- ----->AHL20(2)           <---------AHL20(1)<---------ANAC55(2)     ------->TEIL             --------   aatataccaaaataaagttttcatctattttatttacttgttaatcatgtaaagtgacgaagaatcgatgaatatgatcgtcagtttgaagacatatgta  6159800                                                                                --------->AHL20(2)                                                                                <---------ICU4                                                                          --------->ANAC55(2)                                                                          ----------->GT1                                                            <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                         <---------ANAC58 --------->ANAC58                                                         <---------ANAC46 --------->ANAC46                                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                       <---------MYB52(1)<---------ANAC55(1)    <---------AHL20(2)                                       <xxxxxxxxxxxxxxxxsmallRNA(s)    <---------ARR14(2)                                      <---------RAP2.6(3)<---------ANAC58 --------->ANAC58                                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<---------ANAC55(2)                              --------->GLK1(2)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                             <---------GLK1(2)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                          --------->ANAC58       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                          --------->ANAC58    <----------DOF2<---------CCA1(2)  --------->ATHB51           ----------->GT1--------->ANAC46   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<---------YAB1  <---------TOE2(3)     --------->MYB52(1)--------->REM1(1) <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ------->AHL20(2)     ---------->DOF2 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    --------->ICU4 --------AHL20(2) <----------ID1      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <---------YAB1 ----AHL20(2)     --------->ANAC46 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------->ARR14(2) ->ANAC55(2) <---------MYB52(1)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  --------->ANAC55(1)     ---   atttaagaatcaaccgttaaacgaaaaaacggaatctagccgttacaactttacagattacttgtatcaccagaatacgtaattattttcggtgattctt  6159900                                                                                <---------AHL20(2)                                                                                --------->AHL20(2)                                                                            --------->ATHB51            <---------MYB46(3)                                              --------->AHL20(2)    --------->AHL20(2)                                                     <---------MYB52(1)      --    --------->AHL20(1)                                   --------->ANAC46  --------->ICU4--------->YAB1    <---------AHL20(2)                             --------->AHL20(2)      <---------YAB1<---------ICU4   --------->AHL20(2)                          ----------->GT1     --------->AHL20(2)   <---------ATHB12   <---------AHL20(2)                    --------->HSFC1(1)        <---------AHL20(2) --------->WOX13(1)  <---------AHL20(1)                     <---------HSFB2a(2)      --------->AHL20(2) <---------AHL20(2) --------->YAB1                          --------->HSFB2a(2)   --------->AHL20(2)    --------->AHL20(2) ------>HSFB2a(2)                        <---------HSFC1(1)    <---------AHL20(2)   --------->AHL20(2)   ctaaaataatttgtttgttaaacatgtttaaactaaatgaattctagaaagattaatatacccaaaaaattaataccattatttaaattaatcatcaaat  6160000             --------->ICU4        ----------->GT1                                                               --------->AHL20(2)       <---------YAB1       --------->ARR11(3)                                        --------->AHL20(1)     <---------ICU4         --------->AHL20(1)                                        <---------AHL20(1)    --------->ICU4          <---------AHL20(1)               ---------->DOF2          <---------AHL20(2)    <---------YAB1       >>>>>>>>>>GT-3b           --------->YAB1                    --------->AHL20(2) --------->ICU4       <---------TOE2(3)          <---------YAB1              ---------->DOF2 --------->GT1  <---------YAB1        ----------->GT1 --------->ATHB12   --------->AHL20(2)   gaagtgattattgtaaatatgattaagaaaaatattgaaacagagaaaatcaatattgatggcaaaaggaagaaataaaaaaaggcattaaattaagaga  6160100                                        --------->LBD16                                       --------->DEAR3(1)                                       --------->ATERF1(2)                                       <---------ATERF1(2)                                       --------->DREB2C(2)                                 ------->GAMYB                                 --------->AtMYB61                                 --------->ANAC46                              <<<<<<<<<GT-1                         <---------ARR14(2)                         --------->ARR14(2)        ----------->RAV1(1)                        <---------CCA1(2)        --------->ANAC58                      <---------ANAC46<---------LBD16                      ----------->GT1--------->MYB52(1)                      <------NtERF2--------->MYB46(3)                             <------ZmHOX2a(2)                     ------>NtERF2 <---------MYB55(2)                            <---------ARR11(3)                    <---------ANAC46--------->DEAR3(1)           --------->ZAT2  --------->ARR11(3)                    <---------ANAC58<---------ALFIN1       --------->DAG2    ---------->DOF2                    <---------ANAC58--------->AtMYB61     ---------->DOF2---------->DOF2                   <<<<<<<<<E2Fd--------->MYB46(3) --------->ANAC46 --------->ANAC58                   <<<<<<<<<E2Fc<---------MYB55(2)--------->MYB46(3)--------->ANAC58             <---------YAB1   <-----------GT1    --------->ANAC58<---------ZAT2 *TSS          <------   gaagtcatttattctatgtttggcgcgtatattaaccaccaccggcaaaacacccacaaaaaaagcgagcacgcataaagaaagatcaaaacttccccat  6160200                                          <----------DOF2       --------->AHL20(2)                                          --------------------->WRI1                               --------->AHL20(2)--------->HSFC1(2)                              --------->YAB1     <---------HSFC1(2)     --------->HSFB2a(2)     --------->AHL20(2)  <---------HSFB2a(1)                            ----- ---ALFIN1               --------->AHL20(2)      --------->HSFB2a(1)       --------->RAP2.6(2)-------   ccctcttccaaaatccatcccctcaaaaaaaataaaaatacttcctttcgaaatttcgctaaaaaaaaaaatcgaagccgaaaacaaatagtagaagaaa  6160300                                                                     <-----------RAV1(1)                                                                    ------>ZmHOX2a(2)                                                                    ==============================HOX2a_HOX2a                                                                   ===============================HOX2a_HOX2a                                                                   <------ZmHOX2a(2)                                                                  --------->ARR14(2)                                                                  <---------ARR11(3)                                                             --------->MYB46(3)                             --------->ANAC58             --------->AtMYB61                          <------ZmHOX2a(2)              --------->DEAR3(2)                         --------->ARR11(3) <---------ANAC58 <---------MYB55(2)                   ---------->DOF2          <---------ANAC58-------->P                  ===============HOX2a_HOX2a--------->ALFIN1------>MYB46(1)                  <------ZmHOX2a(1)         <---------ANAC46------>MYB83                           <-          --------->At4g35610--------->ANAC46  --------->REM1(2)  <---------ARR14(2)       <---------  --------->DAG2<---------TOE1(3)        <---------AtMYB61<---------MYB111(1)              ------>ZmHOX2a(1) ---------->DOF2<---------TOE2(3)        --------->ALFIN1--------->MYB46(3)             ---------->ID1 ------>GT1 <----------DOF2---------->DOF2 <-----------------------TaNAC69(2)        --------------->AtSPL8 --->DOF2 <---------At4g35610--------->ANAC58 --------->ALFIN1------->GAMYB      <-------------------   gaaaaaagtttcagctttaaggaaagagatcaagcgactgagagtggtgtggagacagaaccaaccacgatctgtggtttttttttttttgtcctttttt  6160400                                                                                             --------                                                                                        --------->LBD16                                ------>NtERF2                                           ------>NtERF2                               --------->ANAC46                                     <---------ARR14(2)                               <---------ETT(1)                                    <---------At4g35610                               --------->LBD16                                     ------>NtERF2                              <---------HSFB2a(2)                               <---------RAP2.3(1)                              --------->HSFB2a(2)                     --------->ZAT18<---------ATERF1(1)                          <---------ANAC58                            <---------PCF2--------->ARR14(2)                          <---------ANAC58                          <---------DEAR3(1)<---------LBD16 ----------GT1      --------->DAG2                                  <---------ZAT18--------->ABI4(1) -DOF2             ---------->DOF2              ------>ZmHOX2a(2)<---------MYB46(3)--------->At4g35610 -----ANAC81   --------->AHL20(2) <---------ALFIN1              <---------AtMYB61 --------->DEAR3(1)   ttctccaatctcagaaataaaaaaagtttcttcccgacactcccatttgatcggagggcttcgacattggtgggctctgtttcgccgctccggctaaaag  6160500                                  --------->LBD16                                 --------->DEAR3(1)                                 <---------ANAC46                                --------->ATERF1(1)                                --------->RAP2.3(1)                                <---------LBD16                                <------NtERF2                               <---------ERF1                               ------>NtERF2                               <---------ATERF1(1)                               <---------RRTF1(1)                               <---------RAP2.3(1)                              <---------DEAR3(1)                              <---------RRTF1(2)                              <---------RAP2.3(3)                              <---------RAP2.3(2)                              --------->TCP20                              --------->TCP16(1)                              <---------PCF2                              <---------ANAC46                             <---------ABI4(2)                             <------NtERF2                             --------->ATERF1(1)                             --------->RAP2.3(1)                            <---------ATERF1(1)                            --------->ABI4(2)                            ------>NtERF2                   <-----------HVH21         ---------------                            <---------RAP2.3(1)            --------->WOX13(1)         <--------------                            <---------ERF1                ------>ZmHOX2a(2)      --------->ANAC58                           <---------DEAR3(1)             <-------TEIL           --------->ANAC46                           --------->ALFIN1              <------ZmHOX2a(2)       --------->ANAC58                        <---------DEAR3(1)              <---------ARR14(2)    --------->WRKY18(1)      --------->ANAC58 --------->SPL7                   --------->ARR14(2)  <------NtERF2 <---------ARR14(2)      --------->ANAC58 <---------ZAT14                <---------DEAR3(2)    --------->At4g35610      ----------->GT1  --------->ZAT14             <-----------HVH21      <---------ZAT18 --------->ARR14(2)    ---------->DOF2  <---------SPL7              XXXXXXXXXXXXXXXXXXXX>MIR842<---------At4g35610 <---------ZAT6    --------->ANAC58          <-----------HVH21  <---------ANAC55(2) <---------ARR14(2) -->DOF2           --------->ANAC58<------NtERF2<---------At5g28300--------->ATHB12 --------->ARR14(2)   ttagtgtaaagcaaaaatggaacggtacggtggcgccggagaagatgagtcacggtcggatccatcacatgaatggtccgctcaaggaaccgaaactggt  6160600                                                                             --------->TOE2(2)                                                                             --------->TOE1(2)                                                                         ----------->ARR10              <---------YAB1                                          <-------GAMYB      <---------DOF5.7(2)                                            ----------->GT1      --------->MYB52(1)           <----------DOF2                 --------->LBD16  <---------TOE1(2)  --------->GLK1(1)                            <---------ANAC46  <---------TOE2(2)  <---------GLK1(1)     <---------DAG2        <---------LBD16       <---------ANAC58 -->AGL1 --------->TOE2(3)  --------->REM1(1)                   <-----------GT1        <---------ANAC58 ---AGL1<---------ANAC46  ------>ZmHOX2a(1)<----------DOF2   <---------ICU4--------->ARR14(2)     ---   atcgaaggtaacgttgattatgggtttcctacattttctttctctctttttgttaatgtctgatttttacggggttaaatctgcgattagcgtttttgtc  6160700  Previous    Next  AGI:  At5g18550.1    Description:  nucleic acid binding. Identical to Zinc finger CCCH domain-containing protein ZFN-like 3 [Arabidopsis Thaliana] (GB:Q6NPN3); similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT3G06410.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN78551.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) Range:  from: 6160180    to: 6163132    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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