AthaMap TU-Logo
Search
 
   Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
Go to graphical and table display 

1        10        20        30        40        50        60        70        80        90        100 
                                     --------->ANAC58
                                --------->ANAC58
                                --------->ANAC58    --------->ANAC58
       <---------GLK1(2)        --------->ANAC46    --------->ANAC58     <-------TEIL
   ----------->RAV1(2)        --------->ANAC58   <---------ARR14(2)    <---------GLK1(2)          <-
---->ARR14(2)                 --------->ANAC58   --------->ARR14(2)    --------->ARR14(2)     <-----
-----ARR14(2)               --------->CCA1(2)  <--------------OsCBT    <---------ARR14(2)     <-----
---->GLK1(2)         ---------->DOF2 --------->ANAC58           <----------ID1  <----------DOF2 ----
 
tccatcgcctgattctctatgtttcaaagagaaacgcgaaacgcattcgaaggaaacgcgatgaatagcgaccagattcatcgcttttgtttgtgtttcg  5529900
                                                                                                   <
                                                                                                  <-
                                                                                                  <-
                                                                                                  <-
                                                                                             <------
                                                                                             -------
                                                                                             <------
                                                                                             -------
                                                                                             <------
                                                                                             <------
                      <------ZmHOX2a(1)                                                      =======
                    --------->LBD16                                                          -------
                   <---------LBD16                                       ---------->DOF2     <------
                   --------->HSFB2a(2)                                   ===========================
<----------DOF2<----------DOF2    <-----------HVH21                     <------ZmHOX2a(1)    <------
--------DEAR3(2)   <---------HSFB2a(2)                                --------->LBD16        <------
----ANAC58    <---------ANAC58   <---------ZAT6                      <-----------RAV1(2)     <------
----ANAC58    <---------ANAC58  *TSS                          --------->CCA1(2)          <---------ANAC58
------>ID1  <-----------GT1<-----------GT1                  --------->CCA1(2)            <---------ANAC58
 
tcgcttcacttcaaattactttccaggatttaacgagtgtcagtgtcagtataagagagagagagataagagccaggaaagttttctctgtgtcttacgt  5530000
 --------->AHL20(2)
----------DOF2
--------ANAC46
--------ANAC58
--------ANAC58
---O2
-->O2
---ANAC58                                                                <-----------GT1    --------
-->TGA1a --------->YAB1                                                  --------->MYB52(1) <-------
---ANAC58--------->ANAC46       <---------ANAC58                       <---------AHL20(2)   --------
---ANAC55(1)                    <---------ANAC58                  --------->AHL20(2)        --------
==========bZIP_DOF      <---------AHL20(2)      --------->ARR11(3)<---------AHL20(2)        <-------
-->ANAC55(2)    <---------AHL20(2)              <---------ARR11(3)<---------AHL20(1)        --------
---ANAC55(2)   --------->AHL20(2)         >>>>>>>>>GATA-1   --------->YAB1<---------At5g28300
===bZIP_DOF    <---------AHL20(2)  <---------ANAC46         --------->TOE2(3)               ========
---TGA1a<-------TEIL    <---------YAB1  ----------->GT1   --------->GLK1(2)   <---------ANAC46     -
---bZIP60(2)<---------ICU4     --------->SPL7  --------->RVE1(1) --------->AHL20(2)         --------
---ANAC46--------->ANAC55(2) --------->TOE1(2) --------->CCA1(1) <---------AHL20(2)         <-------
 
ggcttttaatatacataattaaatgatataatcgtgcgtcgtatagataaatatctgagataatcttattaaattttaacggtgtatattatgccacgta  5530100
->ANAC58
--TGA1a
->O2                                        ------->TEIL                                          --
->TGA1a                                <---------ANAC55(2)                         --------->ANAC46
--O2                                   <---------ANAC55(1)                         --------->ANAC58
->ANAC58                               --------->O2<-----------GT1        --------->YAB1          <-
===============================bZIP_DOF<---------ANAC58                  <---------ATHB12     ------
------>TEIL               --------->At4g35610 <----------DOF2          ------>MYB46(1)     <--------
->ANAC55(2)          --------->DAG2    <---------ANAC58                ------>MYB83--------->ANAC55(1)
--ANAC55(2)         ---------->DOF2    <---------ANAC46    <---------AHL20(2)      --------->ANAC58
 
tgaaactcaccgagaaaaacagaaaaagctgctatcgatgctacgtgtacttttaaaccgaattaatccgaaccaaatcaaaatacacgaaatgaaaccg  5530200
     --------->ANAC55(2)                              <------------CBF
     <---------At4g35610                        ------>MYB46(1)                         <---------At4g35610
    <---------TOE2(3)                           ------>MYB83                   <----------DOF2     -
------->AHL20(2)                                --------->MYB52(1)         *TSS<---------DAG2 <-----
--------AHL20(2)                              <---------MYB59             <---------ANAC58    <-----
----->GT1                          --------------->AtSPL3  <-----------------AGL1       --------->At4g35610
---GT1 ----------->HVH21  --------->AtMYB61--------->MYB52(1)             <---------ANAC58<---------
 
tttaatttaggtgacagtcagagtgtctaccaaaactaatcgtacaaaaccgaactgaattgaaccgaaatggccatgcctgcttttcttcagctttaag  5530300
                                                                                                 ---
                                                                                               <----
                                                                                             -------
                                                                                           <------ZmHOX2a(2)
                                                                                          <---------ARR11(3)
                                                                                         <------ZmHOX2a(1)
                                                                                         ===========
                                                                                       --------->LBD16
    <------ZmHOX2a(2)                                 <---------RVE1(1)               <---------HSFB2a(2)
   <---------ARR11(3)                                 <---------CCA1(1)               --------->HSFB2a(2)
   --------->ARR11(3)                                <---------AHL20(1)               <---------LBD16
--------->DOF2                                       --------->AHL20(1)          <---------HSFC1(2)
----TOE2(3)                                          --------->ARR11(3)          --------->HSFB2a(1)
----TOE1(3)            <---------ALFIN1              <---------ARR11(3)          <---------HSFB2a(1)
-DOF2    --------->ATHB12                        ---------->DOF2                 --------->HSFC1(2)<
 
ggaaaagatcaaagattgggtcttcaacacttgagagagtctctgtctctgtaaaagatatttgagcttgagaagaacagaagaaacttccaggatcaat  5530400
                                                                   --------->SPL7
                                                                 <---------SPL7
                                                                <---------ANAC55(2)
                                                                <---------ANAC58
                                                                --------->ANAC55(2)
                                                                <---------ANAC58
              <---------ZAT14                                  --------------->AtSPL3
              <---------ZAT18                                --------->GLK1(2)
        <----------DOF2                                      --------->ARR14(2)
        --------->TOE2(3)                                    <---------ARR14(2)
   <------ZmHOX2a(2)                                      --------->LBD16                          <
------>WOX13(1)                                          <---------HSFB2a(2)               <--------
-----ATHB12   --------->ZAT14                            --------->HSFB2a(2)        --------->ARR14(2)
-->WOX13(1)   --------->ZAT18                           <-----------------AGL1      <---------ARR14(2)
==========HOX2a_HOX2a                                 --------->ARR14(2)   --------->DEAR3(1)      -
---------ATHB12  <---------MYB59                      <---------ARR14(2)--------->DEAR3(1)--------->DEAR3(1)
 
caatcgatcaactttagtgaactaactcttgatttttcattcgaagttatggaatcggttcccgaatccgtaccatcgccgaactcgaatacaccgtcaa  5530500
              --------------->AtSPL8
           <---------GLK1(1)
           --------->GLK1(1)
         <---------ZAT14
         --------->ZAT14                                                                   ---------
      --------->LBD16                                                                     <---------ANAC46
     <---------DEAR3(1)                                                                  --------->At4g35610
     --------->DEAR3(1)    <---------ANAC58                                              <---------LBD16
     --------->ATERF1(2)   <---------ANAC58                    <---------WRKY18(1)     --------->ATERF1(1)
   --------->ABI4(1)   <---------DAG2              <---------MYB46(3)<---------ATHB12 <---------At4g35610
   ------>NtERF2       <----------DOF2    --------->ANAC58    --------->WRKY12        --------->At4g35610
  --------->DEAR3(1)--------->DEAR3(1)    --------->ANAC58    --------->WRKY45        <---------ZAT2
  --------->DREB2C(2)------>NtERF2        ----------->HVH21   --------->WRKY38(1)     --------->ZAT2
  ------->GAMYB  <---------SPL1(1)        --------->ANAC46    ----------->HVH21  <---------LBD16
  <---------ALFIN1--------->SPL7         ------>MYB83        <---------MYB52(1) <---------ANAC58
 --------->MYB46(3)--------->DEAR3(2)    ------>MYB46(1)  ------>ZmHOX2a(2)     <---------ANAC46
---------ALFIN1 <---------SPL1(2)      --------->TOE1(2)<---------ARR14(2)   <---------MYB52(1)  ===
---HVH21 <---------ZAT18<----------DOF2--------->TOE2(2)--------->ARR14(2)  <---------DEAR3(2)   ---
-------->AtMYB61<---------SPL7 ----------->GT1    <--------P--------->At4g35610 <---------ANAC58----
 
taccaccgccggtgaactccgtaccgcctttcttgagtaaaacctacgacatggttgatgatccgttgaccaatgaggtcgtttcgtggagcagcgggaa  5530600
                              <---------HSFB2a(2)
                              --------->HSFC1(1)
             <---------ZAT14  <---------HSFC1(1)                                         <-------GAMYB
          ----------->RAV1(2) --------->HSFB2a(2)                                <-----------TGA1
    <-------TEIL          --------->GLK1(1)                                      <-----------HVH21
  <---------GLK1(2)   --------->LBD16                                          <-------TEIL
 --------->ZAT2<---------ANAC58                                              <---------GLK1(2)
 --------->At4g35610 <---------LBD16                                        --------->At4g35610
>LBD16   <---------SPL7--------->LBD16                           --------->MYB46(3)     ----------->GT1
======================RAV <---------GLK1(1)                 --------->YAB1  <---------ZAT2
-------->RAV1(1)  --------->ZAT18  --------->HSFB2a(1)    --------->ANAC58  --------->ZAT2 ---------
----->MYB46(3) <---------ANAC58   <---------TOE1(2)       --------->ANAC58  <---------At4g35610
 
caacagcttcgtcgtctggagtgccccggagttctcgaaggtgctcttgcccaagtatttcaagcacaacaacttctccagcttcgtcagacagttaaat  5530700
                                         <---------HSFB2a(2)
                                         --------->HSFC1(1)
                                         --------->HSFB2a(2)
                                         <---------HSFC1(1)
                                 --------->AHL20(2)
                                --------->AHL20(2)          <---------ANAC46
       --------->YAB1           <---------AHL20(2)          <---------ANAC58
     --------->ANAC58           <---------AHL20(1)          <---------ANAC58
     --------->ANAC58           --------->AHL20(1)    <---------MYB52(1)          ----------->GT1
>AHL20(2)          <---------ZAT6<---------AHL20(2) ------>ZmHOX2a(2)    <---------LBD16 --------->ICU4
 
acttatgtaagcatcattttttgtgttattgtcaatttatttttctagaaattgatcgttttttcgtggtacaatttggggaacatcgtgaaatgttgaa  5530800
<- Previous    Next ->

AGI:  At5g16810.1   
Description:  ATP binding / protein kinase. similar to unnamed protein product [Vitis vinifera] (GB:CAO62166.1); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009)
Range:  from: 5526745    to: 5529933    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At5g16820.1   
Description:  HSF3 (HEAT SHOCK FACTOR 3); DNA binding / transcription factor. Identical to Heat stress transcription factor A-1b (HSFA1B) [Arabidopsis Thaliana] (GB:O81821;GB:Q9LFD6); similar to ATHSFA1E (Arabidopsis thaliana heat shock transcription factor A1E), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G02990.1); similar to HSF3 DNA-binding domain/VP16 activation domain fusion protein [synthetic construct] (GB:AAN86075.1); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain Heat shock factor (HSF)-type, DNA-binding; (InterPro:IPR000232)
Range:  from: 5530276    to: 5532795    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

    printer-friendly version