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AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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          <------ZmHOX2a(1)
          ===================HOX2a_HOX2a                <---------ARR14(2)
          ===========================HOX2a_HOX2a        --------->ARR14(2)
       <------NtERF2                                   <------NtERF2
      --------->LBD16                                 --------->LBD16
     <------NtERF2                                  <------NtERF2
    <---------At4g35610                             <---------LBD16
    ------>NtERF2                                  <---------MYB46(3)
    <---------LBD16                                ------>NtERF2
    --------->At4g35610                           <---------DEAR3(1)
    --------->LBD16           ------>ZmHOX2a(2)   --------->ALFIN1
    <------NtERF2           <---------ARR14(2)   <-------GAMYB
  <---------DEAR3(1)   ------>ZmHOX2a(2)         --------->ATERF1(1)
  --------->ATERF1(1) <------ZmHOX2a(2)         <---------DEAR3(2)                 <---------ANAC58
  <---------RAP2.6(2)--------->ARR11(3)        <---------DREB2C(2)                 <---------ANAC46
 <------NtERF2       <---------ARR14(2)        <---------DEAR4(1)                  <---------ANAC58
 --------->ATERF1(1) <---------ARR11(3)        <---------MYB46(3)                 <------NtERF2
--------->ABI4(2)    --------->ARR14(2)        <---------At1g77200              --------->ALFIN1
<---------MYB46(3)  <---------GLK1(1)          <---------DEAR3(1)     --------->ZAT2
<---------ATERF1(1) --------->GLK1(1)        <-----------HVH21        <---------At4g35610
------>NtERF2     ===================HOX2a_HOX2a<---------MYB46(3)    --------->At4g35610
-------->ALFIN1   <------ZmHOX2a(1)--------->ARR11(3)<---------ANAC46 <---------ZAT2
-->REM1(1)====================HOX2a_HOX2a   <-----------RAV1(1)    <--------P ------->GAMYB        <
 
cggtggccgcggaggaagggaggagatcgtggatcgaagaaattgtactgtcggtggcggaattgaagaggtaagctgcaacggtgtcgtattgctcttc  4633300
                                                                    --------->ARR14(2)
                                                                    <---------ARR14(2)
                                                              <---------ARR14(2)
                                                              --------->ARR14(2)
                                                             <---------CCA1(2)
                                                           <---------ANAC46
                                                          <------NtERF2
                                                         <-----------HVH21
                                                         ------>NtERF2
                                                        <---------ANAC46
                                                        <---------DEAR3(1)
                  <---------ZAT18              --------->TOE2(3)   <---------MYB52(1)
                  <---------ZAT14              --------->TOE1(3)<---------LBD16                 xxxx
        ------>ZmHOX2a(1)        --------->At4g35610    --------->DEAR3(1)                     xxxxx
       <---------ALFIN1          <---------At4g35610 --------->ANAC46  <----------DOF2     <--------
----------DOF2    --------->ZAT14--------->ZAT14------>ZmHOX2a(1) --------->LBD16     <---------MYB52(1)
 
ttctttctctcctccccccagtgtagtagtagtctctgctctcttcttctccttaaacggcgtcgtatccggttctttcttcttgctctgttttttgttg  4633400
                             --------->GLK1(2)
                            --------->ARR14(2)
                            <---------ARR14(2)
                            <---------GLK1(2)
                     <----------DOF2      <---------ANAC46
   <<<<<<<<<TBF1    <---------ANAC58    ------>ZmHOX2a(2)<---------At4g35610              ----------
xxxxxxxxxxxx>smallRNA(i)<---------HSFB2a(2)        <---------ZAT6                        <----------
xxxxxxxxxxx>smallRNA(i) --------->HSFB2a(2)        --------->ALFIN1            >>>>>>>>>CBP60g
---RAV1(1)          <---------ANAC58  --------->ARR11(3) --------->At4g35610   >>>>>>>>>SARD1
 
ttgttcttcttcttgctcttcttgcttctgggattctcgttgatctcgtgagaagtgttgagctcgagcttgagactgagaaatttgggttttttcgttt  4633500
                                                           <---------ANAC58
                                                           <---------ANAC58
                                                          --------->HSFC1(2)
                                                          <---------HSFC1(2)                       -
                                                        <--------P                               ---
               <---------O2                           <---------MYB46(3)                       -----
            ----------->HVH21                        <---------AtMYB61                         <----
          --------->ANAC55(2)                      <---------MYB46(3)               ------>ZmHOX2a(2)
       --------->TOE1(2)                          --------->ALFIN1     <-----------GT1------>ZmHOX2a(1)
      ------>ZmHOX2a(2)--------->ATHB12           <---------AtMYB61<---------MYB52(1) ==============
>ID1<---------ARR11(3)<---------YAB1       ------>ZmHOX2a(1)       <------------------------ANAC81 -
-GT1--------->ARR11(3)--------->ICU4      --------->ANAC46<---------At4g35610     <---------ARR11(3)
 
ttgttctgatcttacgagacgcgtcaagattggaagaagacttatcctccatggtggtggtagcttctctgttttttctcttcttgatcctcttcgatga  4633600
                                   <----------DOF2
                                  <---------ANAC58
                        --------->MYB52(1)
                       <---------SPL7
                       ------>NtERF2
                      <---------ETT(2)
                      --------->ETT(2)
           <-----------GT1   --------->ARR14(2)
-------->TOE1(1)      --------->DEAR3(1)                 ------>ZmHOX2a(2)
--->ZmHOX2a(2)        --------->MYB46(3)       --------->ANAC46
---->ARR11(3)         ----------->HVH21      <---------ALFIN1                          --------->ZAT6
-----ARR11(3)       ------>NtERF2 <---------ANAC58      <------ZmHOX2a(2)            <-----------GT1
====HOX2a_HOX2a    --------->DEAR3(1)  ---------->ID1   --------->GLK1(1)         <----------DOF2
-------->TOE2(1)   ----------->HVH21 <-----------RAV1(1)<---------GLK1(1)      --------->ZAT6     <-
 
tctcgtactctgtttttcttctccgacgaccggacttgctttgttgctacacatctccgatctctgtctctctctctctctaacactttaactcttctct  4633700
                                                                                        ------->MYC3
                                                                                        <-------MYC4
                                                                                        -------->ABF1
                                                                                        ------->MYC4
                                                                                        ------->MYC2
                                                                                        <-------MYC2
                                                                                        <-------MYC3
                                                                                       --------->ANAC55(2)
                                                                                       <--------ABF1
                                                                                       <---------TGA1a
                                                                                       <---------ANAC55(2)
                                                                                       =============
                                                                        <---------------AtSPL8
                                                                        <---------------AtSPL3   ---
                                                               ----------->HVH21       --------->TGA1a
                                                             <---------At4g35610       --------->O2
                                           <------MYB46(1)=======================================bZIP_DOF
                                           <------MYB83   ---------->DOF2 ----------------------->TaNAC69(2)
                                          <---------AtMYB61  <---------ZAT2            <---------O2
           ---------->ID1                 --------->MYB111(2)--------->At4g35610  ----------->HVH21<
---------DOF2  *TSS            --------->YAB1--------->ALFIN1--------->ZAT2   <---------DAG2 -------
 
gctttctaagttttgttctcattttctcgctcactcagaagtatgtaggtggagcgagagggaaagctgacagtgatggtaccttttgacacgtgtctat  4633800
         --------->DAG2                                     <------MYB83
        ---------->DOF2                                     <------MYB46(1)
 <------------CBF                          <-----------RAV1(2)
--------->ATHB12            --------->GLK1(2)          <---------TOE2(3)
===================bZIP_DOF<---------ARR14(2)          <---------TOE1(3)
------>WOX13(1)            <---------GLK1(2)           --------->DAG2
---------ATHB12 --------->YAB1           --------->ALFIN1 <--------P                              <-
-->WOX13(1)   <------------CBF <---------YAB1 <------ZmHOX2a(1)                         <---------ANAC46
 
cagtcattggataaagctattgtaatcttggattctgtttggatgtgcaggagataataaggttggattagattactacattacatctgtgtcttaaact  4633900
                   <---------ANAC58
                   <---------ANAC58
             <---------AHL20(1)
             --------->ARR11(3)
             --------->AHL20(1)
          --------->YAB1                                                                     -------
          <---------AHL20(2)                       --------->DAG2                         --------->YAB1
          --------->AHL20(2)                      ---------->DOF2                  ------>MYB83
      <---------AHL20(2)                   <----------DOF2            <----------DOF2    <---------YAB1
      --------->AHL20(2)        <---------YAB1 --------->YAB1         <---------DAG2    --------->AHL20(2)
   ----------->GT1 ----------->GT1         <---------DAG2       <-----------GT1    ------>MYB46(1)
--------YAB1<---------------AGL15    <-----------GT1   ------->TEIL<-----------GT1----------->RAV1(1)
 
tctgattagttaattatatattgggtaactccattcttattttcaacttttcataaagcaccttgtttttctactttttagataccaacatttttataat  4634000
                                                                            <---------AHL20(2)
                                                                            <---------YAB1
                                                                           --------->AHL20(2)
                                        ------->GAMYB                      <---------AHL20(2)
                                       --------->MYB46(3)              <---------AHL20(2)
                             <-------TEIL                             <---------ARR11(3)
                        <---------GLK1(1)            --------->DAG2   --------->ARR11(3)
                        --------->CCA1(2)           ---------->DOF2   <---------AHL20(2)
                        --------->GLK1(1) ------>MYB83                <---------AHL20(1)
                       <---------ARR14(2) ------>MYB46(1)             --------->AHL20(2)
                       --------->ARR14(2)----------->RAV1(1)          --------->AHL20(1)
                 --------->ALFIN1      <---------MYB52(2)            --------->AHL20(2)
              <---------TOE2(3)   --------->YAB1<---------YAB1   <---------AHL20(2)
-->YAB1     ---------->DOF2  --------->ZAT18   --------->AHL20(2)--------->AHL20(2)    <-----------GT1
 
gttcacattttttaaaaaaggtttgggatatgtgcattagtaaccaacatttttataaagttgacattttaaatatattttaattcaaattaacatgagg  4634100
                                                                              <---------YAB1
                    --------->YAB1                                           --------->AHL20(2)
           ----------->GT1                                              ------>ZmHOX2a(2)      <----
          <---------TOE2(3)                                   <---------RVE1(1)                -----
        ---------->DOF2                                       <---------CCA1(1)       ---------->DOF2
     --------->ANAC58                                        <---------ARR11(3)  <---------CCA1(2)
     --------->ANAC58                        ----------->RAV1(1)<---------AHL20(2)  >>>>>>>>>RAP2.2-
   ---------->DOF2<-----------GT1  <----------DOF2           --------->ARR11(3) <---------AHL20(2) -
 
ttgacattaagcaaaggtaattaacatgatcagtttttctttaggcatcaacagattaacatgagatttttttgatccaatattatatctaaagtgatat  4634200
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AGI:  At5g14370.1   
Description:  similar to CIL [Arabidopsis thaliana] (TAIR:AT4G25990.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14646.1); contains InterPro domain CCT (InterPro:IPR010402)
Range:  from: 4631894    to: 4633716    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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