Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                            <---------ARR14(2)                                                     ----------->RAV1(1)        ---------->DOF2                             --------->ANAC58              <-----------HVH21     --------->TOE2(3)                              --------->ANAC58             <---------TGA1a --------->GLK1(1)                                  --------->ETT(2)             --------->O2 <---------GLK1(1)                                 --------->SPL7                --------->TGA1a ------>LBD16                           <---------MYB52(1)--------->ARR14(2) <------ZmHOX2a(1) ----->ANAC58             <---------At4g35610     <------ZmHOX2a(1)   ------->GAMYB <---------DEAR3(1) ----->ANAC58             --------->At4g35610  <------ZmHOX2a(1)   --------->MYB52(1) <------NtERF2 ----->ANAC46      <---------ANAC58    <-------GAMYB<---------ETT(2)  =====================MYC_MYB -----LBD16        <---------ANAC58   --------------->AGL15   <------ZmHOX2a(1)  <---------O2   cggaaatccataaacccattggagtgagagcttccttcttccgttaagaggaggacgacagataggattcaacggagaaggagacgtcggagtagaagaa  4038400                                                                                <---------At4g35610                                                                                --------->At4g35610                                                                              <-----------RAV1(2)                                                                         ------->PIF5                                                                         <-------PIF5                                                                        --------->ANAC46               --------->ARR14(2)              --------->ZAT18       <-------TEIL  <-------TEIL               <---------ARR14(2)              --------->ETT(2)      <---------WRKY12    <---------MYB46(3)             <----------DOF2                   <---------WRKY38(1)   ggcgagttgttggagaaaatccccaagagactcttcactttcgaaatagtcgactgcaaaatcgattcaggtccacgagcccagatgcatcaagtctcta  4038500                                                                                          -----------                                                                                         <-----------HVH21                                                                                         <-----------TGA1                                                                                        --------->bZIP60(2)                                                                                        <---------bZIP60(1)                                                                                        --------->TGA1a                                                                                        --------->bZIP60(1)                                                                                        <---------O2                                                                                        --------->O2                                                                                        <---------TGA1a                                                                                        <---------ANAC55(2)                                                                                        =============                                                                                        <---------ANAC58                                                                                        --------->ANAC55(2)                                                                                        =============                                                                              ====================bZIP_DOF                                                                              ---------->DOF2  ------                       --------->ANAC58                              --------->TOE2(3)<---------ANAC58                       --------->ANAC58                         --------->HSFC1(2)    <---------ANAC58                       --------->ANAC46                         <---------HSFC1(2)--------->ARR11(3)                    --------->ARR14(2)                          --------->HSFB2a(1) <-----------HVH21                    <---------ARR14(2)                  --------->ZAT2   =========================bZIP_DOF               --------->ANAC58         --------->YAB1  <---------ZAT2   ---------->DOF2<---------ANAC58               --------->ANAC58      <------ZmHOX2a(1)  --------->HSFC1(2) --------->ANAC58  <-------             ---------->DOF2 --------->YAB1             <---------HSFC1(2) --------->ANAC58  --------         <---------ANAC55(2)<---------ATHB12--------->GLK1(2)   <---------HSFB2a(1)<---------REM1(1)   tcaccaaaatcatgtaaaagcaaatacccaataatcttaggagcataatctggctccaagcttcgaattttcgtcaaaagcaaagatgtcgcgtcaccgg  4038600                        <----------DOF2                       <---------DAG2                    --------->REM1(1)                    <-----------GT1               ----------->GT1    ----------->GT1 <---------ALFIN1 >HVH21       <---------TOE1(3) ======================bZIP_DOF ======================bZIP_DOF --->LBD16    <---------TOE2(3)     <-----------RAV1(2)             <---------TOE2(3) --LBD16   <---------AHL20(2)      --------->LBD16         <----------DOF2 ->At4g35610---------->DOF2  <<<<<<<<<TBF1        <----------ID1    <---------TOE1(3)             ---   aatccatggttatataaaggttacacctttcttcttccccagttgataaaaaaaaacaaaactttgatttagggtttcaaaagattagagatttagaaga  4038700                              ------>ZmHOX2a(1)                            ======================HOX2a_HOX2a                            ------>ZmHOX2a(2)                           =======================HOX2a_HOX2a                          --------->ARR14(2)                          <-----------ARR10                          --------->ARR14(3)                          <---------ARR14(3)                          <---------GLK1(2)                          <---------ARR11(3)                               ---------->ID1                          --------->ARR11(3)                              <-----------GT1            ---------->DOF2<------ZmHOX2a(2)                        <------------------------ANAC81      --------->CCA1(2)   <---------ARR14(2)                       <---------AHL20(2)     ------->TEIL ------->DOF2           ----------->ARR10  ------>ZmHOX2a(1)  <---------YAB1 <----------DOF2      *TSS   gaaagtagataagagaaagagggaagaagatcctctccctccgtcctcttcgctcgcttctgttttgatttttttttttctttttggttttgaatctcac  4038800                                          <---------ZAT18                                          --------->ZAT18                                          --------->ZAT14                                       <------MYB83                                      --------->MYB111(1)                                      <---------MYB46(3)                                        <----                                  <-----------RAV1(2)                                        --------                        <----------DOF2<------MYB46(1)          ----------------->AGL1       <-------                       --------->YAB1 --------->ALFIN1     ---------->DOF2                  <--------                    <---------CCA1(2)<--------P    ------>ZmHOX2a(1)                     <---------AHL20(2)                    ------>ZmHOX2a(1)<---------MYB55(1)<---------ZAT6 <---------LBD16<----------DOF2   tcactctctcacttactcactcctatctttatcgctccagttggtgctctctccttactggtaaagaccacttggggaaatgttcttctttttatttatt  4038900                                               --------->LBD16                                              --------->ANAC55(2)                                              <---------ANAC46                                         <---------AHL20(2)                                         <---------ICU4                                        <---------AHL20(2)                                    --------->AHL20(1)                                    <------MYB83                                    <---------AHL20(1)                                    <------MYB46(1)                    --------->At5g28300 --------->AHL20(2)                                -----------                   ----------->GT1  --------->AHL20(2)                            <-----------------AGL1              <------ZmHOX2a(1)     <---------AHL20(2)                           <---------GLK1(2) --       <----------DOF2      --------->LBD16  <---------LBD16              <---------AHL20(2)      <-- -------GT1<---------HSFC1(1)      --------->AHL20(2)               <----------DOF2      --------->MYB46(2) ->AHL20(2)<---------HSFB2a(2)     <---------AHL20(2)               <---------DAG2--------->GLK1(2)<- --AHL20(2)--------->HSFC1(1)   --------->ATHB51                   <---------ANAC58      --------->MYB59 -AHL20(2) --------->HSFB2a(2)  <---------ICU4<---------ANAC55(2)  <---------ANAC58    <---------MYB52(1)   tctattcaactttctaggaaactgtaattccccataattttatttattacggaaatttttgatgctcttgctttatttatacagactctgtttggtaatt  4039000                                                <---------ARR11(3)                                                <---------AGP1                                                --------->ARR11(3)                                                ------->TEIL                                           <---------ICU4                                           -------->HAHB4                              --------->DAG2                                          <---------ATHB51                            ---------->DOF2                                          --------->ICU4                          --------->AHL20(1)                                     ----------->GT1                              <---------AHL20(1) >GT1                              <---------ANAC46                              --------->AHL20(2) ------->HSFB2a(2)              ----------->HVH21 ------>ZmHOX2a(2)       ----------->GT1 -------LBD16               <------MYB46(1)--------->YAB1        <---------AHL20(2)  <---------AHL20(2) --------HSFB2a(2)          <------MYB83--------->YAB1  <-----------GT1   <---------bZIP60(1)      <-   tctggattgtttttcttatacgaacaatgtaggtttgacgagtaataatggatctatattacaatattcaattgtgaggtcaaatatataaagtgtctgt  4039100                                                    --------->KAN4(2)                                                   <---------KAN4(1)             --------->ANAC58                                                  <---------KAN4(2)              --------->ANAC58                                     --------->ANAC58                          ---------->DOF2                                     --------->ANAC58                 ----------------->AGL1                                     --------->ANAC46   <----------DOF2 ------>ZmHOX2a(1)             --------->At4g35610  --------->AtMYB61--------->KAN4(1)  --------------->AGL15        --------->ATHB12     <-----------GT1  --------->At5g28300     <---------------AGL15      ----       <---------ATHB12     <-----------GT1  ----------->GT1         <-----------------AG    <------- <-----------GT1       --------->AHL20(2)  --------->ZAT14           <-----------------AGL1 <-------- --------WOX13(1)      <---------AHL20(2)  <---------ZAT14           ---------->ID1 ----------->RAV1(1)   gattaacaaatcatttgctgtcgattttatttaacacctaagcaatacagtgaatattcttttctcattttgtcctatatggaaagccacatattttatc  4039200                                                                                                   <-                                                                                                  ---                                                                                                  ---                                                                                                  <--                                                                                                  <--                                      <---------TOE2(3)                                           ---                                --------->AHL20(2)             ----------->GT1          --------->YAB1                              --------->TOE2(3)              ---------->DOF2            --------->ATHB12                            <---------TOE2(3)        <---------AHL20(2)                 <--------ATHB1                           <-----------GT1           --------->AHL20(2)                <---------ATHB12 ------->GT1              <-----------GT1         --------->ARR11(3)                   --------->ICU4 ----GT1                 --------->AHL20(2)       <---------ARR11(3)           <----------DOF2    <-- -AHL20(2)        ---------->DOF2     <---------YAB1--------->AHL20(2)        <---------DAG2    -----   agttaaattctatatgaaaaaaaagaatttaacatttattaagattgcaaaagatttaatttagaaagaaaatttagttgcctttttcaatgatggagaa  4039300  Previous    Next  AGI:  At5g12440.1    Description:  zinc finger (CCCH-type) family protein. similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT3G21100.2); similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT3G21100.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN62156.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 4035295    to: 4038798    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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