Home
Tools
- Search
- Colocalization
- Gene Analysis
- Gene Identification
- Small RNA Targets
- MicroRNA Targets
Description
Documentation
Citations
Downloads
Publications
History
Contact
Links
Disclaimer
For complete usage of AthaMap please enable JavaScript in the settings of your browser!
Search
Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
Go to graphical and table display
1 10 20 30 40 50 60 70 80 90 100
------->
GAMYB
--------->
MYB46(3)
--------->
LBD16
<---------
ANAC46
--------->
At4g35610
<---------
ANAC58
<---------
At4g35610
<---------
HSFB2a(2)
<---------
ANAC58
-----
--------->
ZAT2
<---------
ANAC46
<---------
MYB52(1)
<---------
AHL20(2)
<---------
ZAT2
<---------
ANAC58
<-----------
RAV1(1)
--------->
AHL20(2)
--
------>
ZmHOX2a(1)
<---------
ANAC58
--------->
MYB46(3)
--------->
YAB1
<-----
--->
ZmHOX2a(1)
------>
ZmHOX2a(1)
------->
TEIL
<---------
MYB52(2)
----------
----->
TOE2(3)
----------->
RAV1(2)
--------->
ANAC55(2)
----------->
RAV1(1)
---------->
DOF2
ctcatcctccctcagctcctga
aactatgtcgtttcggaaaatacccttgtatatgtaactactgttgtttgcaacaaacataaaattttgaaaagtata
2345400
----------->
GT1
<---------
TOE2(3)
--------->
YAB1
--------->
YAB1
--------->
ATHB51
-------->
HAHB4
--------->
ATHB12
<--------
HAHB4
<--------
ATHB1
--------->
AHL20(2)
<---------
ICU4
<---------
ATHB51
<---------
YAB1
<
----------->
GT1
--------->
ICU4
<---------
AHL20(2)
---->
YAB1
--------->
ICU4
--------->
YAB1
----------->
GT1
<---------
ATHB51
--------->
AHL20(2)
------->
YAB1
<---------
AHL20(2)
--------->
MYB52(1)
--------->
AHL20(2)
<---------
YAB1
----
YAB1
<---------
AHL20(2)
--------->
AHL20(2)
<------
ZmHOX2a(1)
---------->
DOF2
-----
->
GT1
--------->
AHL20(2)
--------->
YAB1
<---------
TOE2(3)
<------
ZmHOX2a(1)
--------->
DAG2
--
ataagaaatgaaataattcatttcatactctaataaaaaaaaacgaataatgtaataca
ttgaaggaggacttaataattagaaaaaggttatataatta
2345500
--------->
ARR11(3)
<---------
ARR11(3)
--------->
AHL20(2)
<---------
YAB1
<---------
MYB46(3)
<----------
DOF2
-----
<----------
DOF2
<---------
AHL20(2)
----------->
GT1
<-----------
GT1
<---------
HSFC1(2)
-------
TEIL
----------->
GT1
--------->
CCA1(2)
---------->
ID1
--------->
HSFB2a(1)
---->
MYB59
<---------
TOE2(3)
--------->
AHL20(1)
<-----------
GT1
<---------
HSFB2a(1)
------->
CCA1(2)
--------->
DAG2
--------->
ARR11(3)
<---------
AHL20(2)
--------->
HSFC1(2)
gatacattctttttttaaaaaggttatataattagatatattcgagtggttagaattttttttccctttgtaaacatttgaaacttaagaaatttctggt
2345600
--------->
ANAC58
--------->
YAB1
<--------
ATHB1
--------->
DAG2
<---------
ICU4
---------->
DOF2
<---------
YAB1
----------->
GT1
<---------
ATHB51
<---------
AHL20(2)
----------->
GT1
------------>
CBF
<---------
AHL20(1)
=====================
HOX2a_HOX2a
--------->
ANAC58
--------->
AHL20(2)
---------->
DOF2
--------->
ANAC58
-----
--------->
AHL20(1)
--------->
YAB1
<------
ZmHOX2a(2)
--------->
MYB52(1)
---->
WRKY18(1)
---------->
DOF2
--------->
TOE2(3)
<------
ZmHOX2a(1)
--------->
ANAC58
-----
caataaaatgtaaagttgaaaaagtaatagaaatattcttagagaaattatagcaggatggaaaaatggatcaccacaaacaataatagcaaacgaaaac
2345700
-----
--------
--------->
AHL20(1)
--------->
AHL20(2)
------------------------>
ANAC81
----------->
TBP
--------->
LBD16
--------->
AHL20(2)
<---------
AHL20(1)
----------->
GT1
-------------------
--------->
AHL20(2)
--------->
AHL20(1)
<---------
ATHB12
<----------
ID1
<----
---->
ANAC58
<---------
ARR11(3)
*
TSS
--------->
HSFB2a(2)
--------->
YAB1
---->
ANAC58
------------>
CBF
<----------
DOF2
<---------
HSFB2a(2)
--------->
AHL20(2)
gaaattcaaaaaaattcaggtctctgaaacaatatatatacccatagccatctttcca
tcaaatcatccagaaaaaacaaaaaaaaacaaaaaaataata
2345800
<----------
DOF2
--------->
AHL20(2)
<---------
AHL20(1)
<---------
AHL20(2)
--------->
ARR11(3)
--------->
AHL20(2)
<------
MYB46(1)
<---------
ARR11(3)
--------->
AHL20(2)
<------
MYB83
--------->
AHL20(1)
--------->
YAB1
<--------
P
--------->
RVE1(1)
--------->
AHL20(2)
<-----------
RAV1(1)
--------->
AHL20(2)
--------->
AHL20(1)
--------->
MYB59
<------
---->
AHL20(2)
--------->
YAB1
<-------
TEIL
<---------
AHL20(1)
------>
ZmHOX2a(2)
->
YAB1
--------->
CCA1(1)
--------->
AHL20(2)
--------->
CCA1(2)
--------->
AHL20(1)
<--------
----->
ANAC81
--------->
YAB1
<---------
AHL20(2)
<---------
AHL20(2)
--------->
ARR11(3)
-----
AHL20(2)
--------->
AHL20(2)
--------->
ICU4
--------->
AHL20(2)
<---------
ARR11(3)
aaacaaaaaaatatcttttttttttctaataaaaaaaaaataataaataaat
atgagatacacaaatgtgtccattttattaggcatgttggtgatcttt
2345900
<---------
DEAR3(2)
<------
MYB83
<------
MYB46(1)
<---------
MYB46(3)
<-------
MYC3
------->
MYC3
------>
MYB83
<---------
MYB46(3)
<---------
MYB52(1)
------>
MYB46(1)
--------->
ALFIN1
<---------
MYB52(1)
--------->
AtMYB61
<---------
ANAC46
--------->
O2
--------->
ATHB12
--------->
ZAT14
========================
--------->
At4g35610
--------->
ZAT18
<---------
TGA1a
<-----------
GT1
<---------
At4g35610
<---------
ZAT14
--------->
TGA1a
----
DOF2
<-----------
RAV1(2)
--------->
ALFIN1
<---------
O2
--
-
YAB1
<---------
ATHB12
----------->
HVH21
<-----------
RAV1(1)
<---------
ALFIN1
-----
gtttcaccaatggtgttcgcagatgatttgacaccaatcccagagggcaaaccccaagtggtgcagtggttcaatacccacgttggtccattggctcaac
2346000
--------->
ANAC55(1)
--------->
ZAT2
--------->
ANAC55(2)
<---------
At4g35610
--------->
At4g35610
----------->
RAV1(2)
<---------
At4g35610
--------->
YAB1
------>
ZmHOX2a(2)
--------->
ANAC58
----
<------
ZmHOX2a(2)
--------->
ANAC46
<---
--------->
AGP1
<---------
ZAT2
--------->
ANAC58
<---
--------->
ARR14(2)
<---------
At4g35610
<---
<---------
ARR11(3)
<---------
ZAT2
----
<---------
ARR14(2)
--------->
At4g35610
----
--------->
ARR11(3)
<----------
CDC5
------->
TEIL
--------->
ATHB12
----------->
ARR10
<---------
ZAT2
--------->
O2
<---------
ICU4
=========
bZIP_DOF
--------->
ZAT2
<---------
ALFIN1
--------->
ICU4
-------->
DOF2
--------->
At4g35610
<---------
CCA1(2)
<-----------
GT1
<---------
---->
ANAC46
------>
ZmHOX2a(1)
<---------
ATERF1(1)
<---------
ALFIN1
<---------
YAB1
<--
gtaaaggcttagatcctgctctcgtagctgctgaggctgctccacgtatcatcaac
gtataactcacacttgattttcccaaactcatcattgtaacaat
2346100
--------->
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(1)
<--------
--------->
AHL20(2)
---------
--------->
TOE2(3)
--------->
At4g35610
--------->
YAB1
>>>>>>>>>
MYB98
<---------
At4g35610
---------->
DOF2
<---------
AHL20(2)
<-----------
RAV1(2)
<---------
ATHB12
----->
AHL20(1)
--------->
ATHB51
<---------
At4g35610
--------->
ANAC58
---
------
AHL20(1)
--------->
ATHB12
<------
MYB46(1)
--------->
ANAC46
<---
------
AHL20(2)
<---------
YAB1
<------
MYB83
--------->
RAP2.6(2)
------
ARR11(3)
<---------
AHL20(2)
----------->
GT1
--------->
ANAC58
----
----->
ARR11(3)
<---------
ICU4
<---------
DEAR3(1)
------->
GAMYB
<--------
----->
AHL20(2)
--------->
ICU4
---------->
DOF2
--------->
MYB46(3)
<---
--
GT1
--------->
YAB1
--------->
AHL20(2)
<---------
ARR14(2)
--------->
MYB52(1)
<--------
-------
AHL20(2)
----------->
GT1
--------->
At4g35610
--------->
ZAT6
--------->
ICU4
--
atattttaacataaattttttgaaaacatgtaaatattattgcag
gtgaatccaaagggaggtgaattcaaaacactaacagacgcaataaagagcgttc
2346200
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(l2)
--------->
ANAC58
--------->
ANAC58
-
HSFB2a(1)
>
HSFB2a(1)
------>
ANAC46
------
LBD16
<---------
MYB46(3)
----->
HSFB2a(2)
--------->
YAB1
<---------
ZAT14
--------->
MYB46(3)
-
ANAC58
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<------
ZmHOX2a(1)
------
HSFB2a(2)
<---------
YAB1
--------->
ZAT14
--------->
ETT(2)
-
-
ANAC58
---------->
DOF2
---------->
DOF2
<---------
ANAC46
<---------
ETT(2)
<---------
ICU4
-
------->
LBD16
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
--------->
ZAT18
<---------
MYB52(2)
--------->
ATHB12
ccgcagggaacacaaagcgggtgatcataaagatggctcatggtgagtacagagagaaggtcactatcgacaggaacaaacccttcattacattgatggg
2346300
Previous
Next
AGI:
At5g07400.1
Description:
forkhead-associated domain-containing protein / FHA domain-containing protein. similar to tyrosyl-DNA phosphodiesterase-related [Arabidopsis thaliana] (TAIR:AT5G15170.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39513.1); similar to Os04g0403400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052698.1); contains InterPro domain Tyrosyl-DNA phosphodiesterase; (InterPro:IPR010347); contains InterPro domain HIRAN (InterPro:IPR014905); contains InterPro domain Forkhead-associated (InterPro:IPR000253); contains InterPro domain SMAD/FHA (InterPro:IPR008984)
Range:
from: 2340643
to: 2345459
Orientation: Forward
Links:
TAIR
MIPS
AGI:
At5g07410.1
Description:
pectinesterase family protein. similar to ATPPME1, pectinesterase [Arabidopsis thaliana] (TAIR:AT1G69940.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62286.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Pectinesterase, catalytic; (InterPro:IPR000070); contains InterPro domain Pectin lyase fold/virulence factor (InterPro:IPR011050)
Range:
from: 2345759
to: 2347498
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
printer-friendly version