Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100            --------->ATERF1(1)      <-----------HVH21     <-----------RAV1(1)   <---------TGA1a   --------->TGA1a   --------->O2   <---------O2 -------->DEAR3(1) ---->GAMYB--------->DEAR3(1)                                        <-----------GT1 ----->ANAC46                                                 --------->TOE2(3) ----->DEAR3(1)                                             <---------YAB1 ----->ANAC58        *TSS                                  --------->KAN4(2) ----->ANAC58       ----------->GT1                       <---------KAN4(1) ---WRKY38(1)     <---------ICU4                          --------->KAN4(1) >ANAC58  <------NtERF2                                  <---------KAN4(2) >ANAC58 ------>NtERF2          <------------CBF  --------->ALFIN1  <---------AHL20(2) >ANAC46--------->ETT(2)     ------------>CBF <------ZmHOX2a(1)     --------->AHL20(2)   cgccctcgtgtcgccctccataatgtcaaaattcaattgacataagcaggatgtgtgagattattcttaattaactattttgttgttagagaacaaaact  2108100                                  <----------DOF2                                  <---------DAG2                     <----------DOF2                            --------->ANAC58                        <---------DAG2           --------                            --------->ZAT6                        ------>NtERF2              <-------                            --------->ANAC58                   ------->GAMYB                 --------                          <-----------GT1                   --------->ARR14(2)         --------->YAB1                  <---------AHL20(2)                     --------->ANAC55(2)           --------->TOE2(3)                <---------------AGL15                    <---------ANAC55(2)        <----------DOF2                --------------->AGL15           <---------AtLEC2 <---------ALFIN1  <---------ANAC58               ----------------->AGL3   <---------YAB1   --------->ANAC58          <---------ANAC58               <-----------------AGL3   <---------TOE2(3)--------->ANAC58     <----------DOF2<-------  ---------->DOF2 --------->AHL20(2)   <-----------GT1<------ZmHOX2a(1)--------->AHL20(2)   <--------   catacaaagagatagcttcttaaattagtaacgctactttttaacattgtgcatgaggaacgtaaccccaccttttaatacttttgctttcttaatcatt  2108200                                      --------->ATHB12                                      --------->ATHB51                                     <---------YAB1                                  --------->AHL20(2)  <----------DOF2        --------->AHL20(1) ->YAB1                  --------->AHL20(2)    <---------MYB46(3) --ICU4                  <---------AHL20(2)    <------MYB83             <---------PCF2 ->ATHB12               <---------AHL20(2)     <------MYB46(1)       --------->ALFIN1<---------WRKY18(1) -HAHB4                 --------->AHL20(2)     ----------->GT1    --------->DAG2  <---------ANAC58 -ATHB12    <---------AHL20(2)    <---------AHL20(2)             ---------->DOF2  <---------ANAC58   tctactttgaatattcaatttcccaattaaattgattttattattgggctggttaagaaactcttaaaaaagtgggcctattaggcttgactacttgtaa  2108300                                            ---------->DOF2                                  --------                                  --------->ANAC58   <---------ARR11(3)                     <--------                        --------->ANAC58   --------->AtMYB61                             xxxxxxxxxxxx                        --------->ANAC58 ------>MYB46(1)                             <------NtERF2                        --------->AtLEC2 ------>MYB83--------->ARR11(3)          <-----------HVH21 --                 --------->MYB52(2)    --------->MYB46(3)                        --------->LBD16  <--                 <---------MYB46(3)   --------->DEAR3(2)                         ------>NtERF2   <---             <---------YAB1       --------->ANAC58  <---------CCA1(2)           --------->ANAC46 ----        <----------DOF2 --------->ANAC46--------->ANAC46                       <---------LBD16 <-----   gaagcctgttcttttatgtttgttacaagcaaacacaagaacccaccaaagtctaaatcttcttcaccggtcttcttcgtctccggcagagcttatgatg  2108400                                 --------->ZAT2                                                <----- ->YAB1                          --------->At4g35610                                          ------- -YAB1                           <---------ZAT2                                        ------------>CBF xxxxxxxxxxxxx>smallRNA(le3)     <---------At4g35610      <---------TOE2(3)           --------->ANAC58 ---->ZmHOX2a(2)       --------->ARR14(2)               ---------->DOF2<---------AHL20(2)   --------- -------YAB1           <---------ARR14(2)       ---------->DOF2---------->DOF2    --------->ANAC58 ------ARR11(3)     <---------ANAC58        ----------->GT1----------->GT1        --------->ANAC58 ----->ARR11(3)     <---------ANAC58  --------->LBD16 <-------TEIL  <----------DOF2   --------->ANAC58 ----YAB1    ---------->DOF2     <---------GLK1(1)   --------->CCA1(2) --------->AHL20(2)  <---------ATHB12   atccttgaagatggcaaaagaagcgtatcgacttgagctccgagactcgtaaaagattcaaaggtaaaagcttttaatttgctcaagtaagcaatgaaac  2108500                              <---------------AGL15                             <-----------------AGL1                     <---------TGA1a                     --------->O2                                 --------->AHL20(2)               --                     ======================================bZIP_DOF                                ==                     --------->TGA1a                              --------->YAB1            <--------                     <---------O2                     --------->HSFC1(1)             --------->ARR14(2)                     --------->ANAC46                 --------->HSFB2a(2)            <---------ARR14(2)                  <-------TEIL--------------->AGL15   <---------HSFB2a(2)         --------->HSFB2a(2)                 --------->CCA1(2)                    <---------HSFC1(1)          <---------HSFB2a(2) ----HSFC1(2)   <---------ARR14(2)        --------->YAB1    --------->ANAC58      --------->HSFC1(1) >TEIL          --------->ARR14(2)     <---------GLK1(1)    --------->ANAC58      <---------HSFC1(1) >YAB1  --------->TOE2(3)<---------DEAR3(2)     <----------DOF2  <---------ATHB12<---------LBD16   ==   ttcggcaaaaccctagtagattcacgtctgttctcaaatgggtatcacaactttctctagaaacccaattaaaaccctcaatttctggaactgggtttct  2108600                                  <-----------TGA1                                  <-----------HVH21                                 --------->ANAC46                                 --------->DREB2C(2)                                 --------->DEAR3(1)                                <------NtERF2                               ------>NtERF2                              <---------ALFIN1                           --------->ANAC46                        <----------DOF2                       ------>ZmHOX2a(2)                     <---------ARR11(3)                     --------->ARR11(3)                     <---------ARR14(2)                     --------->ARR14(2)                     <---------AGP1                     --------->AGP1----------->HVH21       --------->ZAT18<------ZmHOX2a(2)    --------->MYB52(1)                            ----------->GT1 ---->ZmHOX2a(1)    <---------CCA1(2)      <---------DOF5.7(2)                    --------->ANAC58 =============================HOX2a_HOX2a--------->DOF5.7(2)       ---------->DOF2--------->ANAC46 -GLK1(1)   <---------ALFIN1  --------->DEAR3(1)     <---------ZAT14              --------->ANAC58 ============================HOX2a_HOX2a <---------MYB52(1)   --------->GLK1(1)--------->GLK1(2)   cctccgatgtgcccaaacccctagatctttcgccaccgtcaccggtaacgaagtttgcagtgagaaatcgaaagtgaagagaacccgaaatgggtttaaa  2108700                                  <-----------RAV1(1)                             --------->ANAC58                             --------->ANAC58                         <---------TOE2(3)                     --------->At4g35610                              --------->ARR14(2)                     --------->ZAT2                                   <---------ARR14(2)                     <---------At4g35610                <---------STY1(1)              <------ZmHOX2a(1)   --------->ICU4        --------->STY1(1)            --------->MYB59<------ZmHOX2a(1) <-----------GT1      --------->ZAT6   atcactcccaatgttaggaaattagctgaggaagcaatgttggattatttctattccactaggggtttacagtatatggttgcagagagtatgagcaaga  2108800                                                                 <---------ATHB12                                                                ------>MYB83                                                  <---------At4g35610                                           <-----------GT1      ------>MYB46(1)                                        <---------ZAT6       --------->MYB46(3)                  --------->GLK1(2) <---------ANAC58        -------->P                         <-----              --------->YAB1        <---------ANAC58       --------->WOX13(1) --------->ARR11(3)    <         <---------YAB1            --------->ATHB12    --------->GLK1(1)      <---------ARR11(3)  ---         <---------AHL20(2)  ---------->DOF2<---------At5g28300--------->WOX13(1)        <-----------GT1   acagtccaatttttattgataatcttttgaagaaagttgattgtgttactgcttctgatatcaaccaatctattactcgatatctacggtttcaccctgt  2108900                                                              <---------ANAC46                                                              <---------ANAC58                                                         <------MYB83                                                         <------MYB46(1)                                                    <---------ICU4                                                    <--------HAHB4                                                    --------->ATHB12                           <---------TOE1(3)       --------->ICU4        --------->ARR11(3)         <           <---------DAG2 <-----------RAV1(2)      <---------YAB1        <---------ARR11(3)         < ------HVH21<----------DOF2<---------TOE2(3)     --------->YAB1    --------->YAB1                 <-- ---------ATHB12<---------ANAC58               <---------KAN4(2)  ----------->HVH21           <------ ------>WOX13(1)<---------ANAC58            ----------->GT1   <---------ANAC58                <------   caatgaattcgagcctttccttgagagttcaggtttgaatcccagtgagtataatcatttggttccctgtgataaggtcttcttggatgaagaaggcttt  2109000  Previous    Next  AGI:  At5g06805.1    Description:  transposable element gene. similar to RNase H domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G36905.1); similar to Ribonuclease H [Medicago truncatula] (GB:ABD28505.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) Range:  from: 2106098    to: 2108021    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g06810.1    Description:  mitochondrial transcription termination factor-related / mTERF-related. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G19650.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23377.1); contains InterPro domain Mitochodrial transcription termination factor-related (InterPro:IPR003690) Range:  from: 2108494    to: 2112257    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version