Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                --------->ANAC58                                        --------->GLK1(1)                                        <------ZmHOX2a(2)                                       <---------AGP1                                       --------->ARR11(3)                                       --------->ARR14(3)                                       <---------ARR14(3)                                       <---------ARR11(3)                                       --------->ARR14(2)                          --------->ZAT2<---------GLK1(1)                          <---------At4g35610 --------->ANAC46                          --------->At4g35610 --------->MYB46(3)                       <---------At4g35610    --------->ANAC58                      --------->ANAC58 <---------ARR14(2)             <----------DOF2       ---------             <---------ANAC46        ----------->ARR10          --------->ARR11(3)          <--------            <---------LBD16  <-------TEIL------>ZmHOX2a(2)      <---------ARR11(3)         <---------ARR11(3) --------At4g35610    --------->ANAC58<---------CCA1(2)        --------->RVE1(1)     --------->ZAT6 ------>ANAC58    <------MYB83       <-------TEIL     --------->AHL20(2)  <-----------GT1  --------->ARR11(3) ------>ANAC58    <------MYB46(1)   <--------P----------->HVH21--------->CCA1(1)------>ZmHOX2a(1)  --   cagcaaacttgaatttcggatggtaagcagctacataggtagatctccacgacccattaaacaaaaaatctccttttaactcctctaacacaagatttct  2002700                                                                      <------NtERF2                                                                     ------>NtERF2                                                                <---------WOX13(1)                                                              -------->HAHB4                      <---------AHL20(1)                      --------->ATHB12                      --------->AHL20(1)                      <------------ATHB5       <---------ARR14(2)           --------->ATHB12                                  <---------ATHB12          --------->ARR14(2)           <---------ICU4                                    --------->ICU4           --------->GLK1(1)       <-------TEIL   --------->ARR11(3)               --------->ANAC58              <---------KAN4(2) >GLK1(1) <---------YAB1                 --------->ZAT6--------->ANAC46             <---------GLK1(2) -GLK1(1) --------->ICU4                <---------At5g28300  <---------YAB1   <---------ARR11(3) ------->LBD16       --------->AHL20(2)<-----------GT1 --------->ANAC58       --------->ARR11(3)   ccagagaggctcatgattagcaaatatatagaatgacttagttacagtagccaaaacacccaaatgattggcgccaagaagacctagaatatccaaaacg  2002800                           ------>MYB46(1)                           ------>MYB83                         <---------MYB46(2)                         <---------MYB59                     ----------->GT1              <---------LBD16                             <------ZmHOX2a(1)            --------->GLK1(2)                          <-----------RAV1(2)       <---------MYB46(3)            <---------ARR14(2)                       ----------->RAV1(1)      --------->LBD16            --------->ARR14(2)                     --------->ZAT18           --------->HSFB2a(2)            --------->ARR11(3)                  <---------At5g28300          <---------HSFB2a(2)   ----------->RAV1(2)  ----------------->AG   <---------WRKY18(1)          <---------LBD16   <---------At4g35610  <---------ANAC55(2)   --------->WRKY38(1)       <---------GLK1(1)   --------->At4g35610  --------->ANAC55(2)   --------->WRKY12       <---------TOE2(3)   agctcatctgagagtatctggagattacctaatccagtgtttcgcacattgaccgcaccaggattgaaatataggtttcccagaggttgaactccatgct  2002900                     --------->At4g35610                     <---------At4g35610                 <-----------GT1        <---------At4g35610                                                       <---------TOE2(2)        --------->ZAT2                            ------>ZmHOX2a(1)<---------HSFB2a(2)        --------->At4g35610                 <---------At4g35610    --------->HSFB2a(2)<-------TEIL        <---------ZAT2              --------->REM1(1)             <---------LBD16 <---------TOE1(2)      <------ZmHOX2a(1)           ------>ZmHOX2a(1)           ------>ZmHOX2a(1)  <-----------RAV1(2)   cttgagaaggagctgcaattttcagcttgaagcctccttcatcttcatcttcctcttctacctccttctctggaaacagagactcaggttcatgctgatg  2003000                                                                                           <---------ANAC46                                                                                          <------NtERF2                                                                                         <---------RAP2.3(1)                                                                              <------ZmHOX2a(2)                                                                             <---------ARR14(2)                                                                             --------->ARR14(2)                                                                             <---------ARR11(3)                                                                             --------->ARR11(3)                               <----------DOF2                 <---------ANAC58      ---------->CDC5                             <---------DEAR3(2)    <---------ANAC58         --------->GLK1(1)                         <---------ANAC58          <---------ANAC58         <---------GLK1(1)                         <---------ANAC58        --------->GLK1(2)          *TSS   --------->TOE1(3)                         --------->ANAC46       --------->ARR14(2)      <---------ANAC46<---------DEAR3(1)              --------->ARR14(2)                <---------ARR14(2)     <---------LBD16 --------->At4g35610              <---------ARR14(2)   <---------TOE2(3)      <----------DOF2  ----------->ARR10        <----------DOF2<-----------GT1          <---------GLK1(2)    ----------->HVH21 <---------At4g35610 <----------DOF2     <---------GLK1(1)     ----------->RAV1(1) <---------ANAC58    --------->TOE2(3)   gagctttagtcttttggatttggatttacgtcgcttcgaggttagcaacagattcttgcactttggcatgtttgacggagatcagccttagcggcgaggg  2003100                                                         <---------ARR11(3)                                                         <---------ARR14(2)           <---------ICU4                            <---------YAB1               <-----------ARR10            <-----------GT1                  <---------ALFIN1                       --------->ARR11(3)          --------->ICU4              <---------ZAT18                            --------->ARR14(3)      --------->At5g28300              <---------ZAT14--------->ATHB51            <---------ARR14(3)     --------->TOE2(3)              --------->ZAT14--------->AHL20(2)          --------->GLK1(2)      ----------->GT1            --------->At4g35610   <-----------GT1 ----------->GT1               ------->GAMYB        <-----------GT1     --------->ICU4      <------------CBF                --------->YAB1   ttttgggttttatcagttcaccacggtttcattatttaaccagaagatggaattgagaaaatcttggttcgaaccggttcaaccgtaataactactcaag  2003200                                        --------->ATHB12                                    --------->ATHB12                                --------->ATHB12                                <---------ICU4                               --------->ICU4                                              --------->ATHB12                             <---------ICU4            <---------YAB1                 ------>ZmHOX2a(2)            <-----------RAV1(1)<---------YAB1          <---------WOX13(1)           --------->ARR11(3)          <---------GLK1(2)  --------->YAB1         <---------YAB1                  <---------ARR11(3)     <-----------GT1<---------TOE2(3) <---------WOX13(1)       <----------DOF2  --------->YAB1------>ZmHOX2a(2)   tactgtattacagaatgttgctaatgtagaatcatcattgattgattacacattttgattaatgccttttaaaatttgacaaaaatgatctattgatcgg  2003300                                       --------->ARR11(3)                                      <------ZmHOX2a(1)                                    <---------TOE2(3)                               --------->ARR14(2)                               --------->GLK1(2)                               <---------ARR14(2)                      --------->AHL20(1)                      <---------AHL20(2)                                <---------ARR14(2)                ----------->GT1<-----------ARR10                      --------->HSFB2a(1)  <---------          <------MYB46(1)     <---------GLK1(2)                     <---------MYB52(1)   <----------DOF2          <------MYB83<---------AHL20(1)                           --------->LBD16      --------->TOE2(3)     ----------->HVH21--------->ARR11(3)<------ZmHOX2a(2)        <---------LBD16        <---------DAG2   tgatagcctgataggttatagtaaaatattgagaatctgaggatcaagacaatgccaagttccattaaccggaagttctgagagagataacctttttttt  2003400                                  ----------->GT1 <---------At4g35610                                 <---------HSFB2a(2)                                 --------->HSFB2a(2)   <---------YAB1            --------->LBD16   --------->ARR14(2)  --------->At4g35610               --------->ZAT14           --------->HSFB2a(2)--------->GLK1(2)   <---------ZAT2                   <---------REM1(1)           <---------HSFB2a(2)<---------ARR14(2)  --------->ZAT2        <---------ANAC58       <----------DOF2       <---------GLK1(2)--------->ANAC46          <---------ANAC58   <---------ALFIN1 ---------------ANAC81---------->DOF2   --------->TOE2(3)    ---------->DOF2 <----------DOF2   gtttgttttctttccagagaaattcaaagaagaatctggaaacattatacacagcttacaatagaaagaacaagacgtgcttttagtgtagcctcaccga  2003500                                                                ----------->GT1                              --------->MYB46(3)              ---------->DOF2                            ----------->RAV1(1)        ------>MYB46(1)                           --------->MYB46(3)          --------->AtLEC2                         ------>MYB46(1)               ------>MYB83                         ----------->RAV1(1)           --------->ANAC58                         ------>MYB83                  --------->ANAC58                       --------->MYB46(3)              --------->ANAC46                       ------->GAMYB              --------->ANAC46         --------->ZAT14                      --------->ANAC46         --------->ARR14(2)          <---------ZAT18                     ------>MYB83              <---------ARR14(2)----------->GT1    --------->YAB1   ------>MYB46(1)      ----------->GT1 ---------->DOF2  <---------ZAT14   <---------ATHB12  -------->P   ----------->HVH21 --------->ANAC46       --------->ZAT18  <--------   gacaaatcatcaaaccccattccaacccaacaacaaatgacatatggcaaatacaccaagcaaagaaagataaaaactgcacattagagaaaaatcattt  2003600  Previous    Next  AGI:  At5g06550.1    Description:  Identical to F-box protein At5g06550 [Arabidopsis Thaliana] (GB:Q67XX3;GB:Q9FG15); similar to transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G78280.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN75104.1); contains InterPro domain Transcription factor jumonji (InterPro:IPR013129); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347) Range:  from: 2001135    to: 2003076    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g06560.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G11850.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G11850.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO39886.1); contains InterPro domain Protein of unknown function DUF593 (InterPro:IPR007656) Range:  from: 2003305    to: 2006189    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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