Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                            <-----------HVH21                                         <---------O2                                         --------->TGA1a                                            -                                         --------->O2                                               <                                         <---------TGA1a                                            <                                    --------->ANAC58                                        ---------                                    --------->ANAC58                                        ---------                                    --------->ANAC46                                    ----------->HVH21                                  ---------->DOF2                                     ------>ZmHOX2a(1)                               <---------MYB59                                        <---------At4g35610                               --------->TOE1(3)    --------->YAB1                    --------->At4g35610 -->YAB1--------->YAB1         --------->TOE2(3)   <------ZmHOX2a(2)           <---------ANAC58     - -TOE2(3)         =================================bZIP_DOF                    <---------ANAC46     - -TOE1(3)         <----------DOF2 =================bZIP_DOF                    <---------ANAC58    <-   aattctcaaatcacaagtttctttagcacaaaacctaaacgcaacgtgagacgatcatatgtctcgaccatcttcgaccttgggtgtcctctgaacgcat  907000               <---------ICU4               --------->YAB1            ------>MYB83      ----------->HVH21    --------->At4g35610                      --------->TOE1(3)    ----------->RAV1(2)              -------->ATHB1 <---------HSFC1(2)                  <---------ICU4 --------->HSFC1(2)                 <---------YAB1 <---------HSFB2a(1)                <---------AHL20(2) --------->HSFB2a(1)                --------->AHL20(1) -------->ARR14(2)                  --------->ICU4                                             <----- ---------ARR14(2)                  --------->AHL20(2)                                         <----- -----------ARR10                --------->AHL20(2)                                           ------- >ANAC58    ------>MYB46(1)      <---------AHL20(2)                                    <------------- >ANAC58  <---------MYB59        --------->AHL20(1)                                    <------------- -------->GLK1(2)               --------->AHL20(2)                        <---------ATHB12--------->ATHB12 -------->ARR11(3)  --------->ANAC55(2)      --------->TOE2(3) <---------YAB1         --------->MYB52(1) --------GLK1(2)    <---------ANAC55(2)<---------YAB1         <---------TOE2(3)  <---------MYB59   agaatcttctgacctactcatcacataacaaaaaaaaaattattaaacctaaaaaaaacttatttatgttaactcaatcgataccgaataactgatttgg  907100     <<<<<<<<<<WRKY26     <<<<<<<<<<WRKY38                                                                 ---------------     <<<<<<<<<<WRKY43                                                              <---------ANAC58 -MYB46(1)                                                                       ------>MYB46(1) -MYB83                                                                          ------>MYB83 -->MYB59                                       --------->MYB46(3)          <-----------GT1 ----AG                            <---------AHL20(2)                 --------->ANAC55(2) ----AGL1 <----------DOF2      --------->AHL20(2)------->GAMYB      <-----------GT1<---------ANAC58   tattttggtcacctttgtatttttgttcttcatatatataaactaactcaaccaaaaacttgaaatgtttttacctattaaccttccgtccatatgaagc  907200                                                --------->ANAC46                                               ------>ZmHOX2a(1)                                           <-----------ARR10                      --------->ARR11(3)                                           <---------ARR14(2)                     <---------ARR11(3)<                                           --------->ARR14(2)                <<<<<<<ZML2            -                                          --------->GLK1(1)               <---------HSFB2a(2)     ---                   <---------ALFIN1       <---------GLK1(1)         <----------DOF2             <----              --------->ARR14(2)      --------->ANAC58           <---------ARR11(3)      <-----------GT1      --------->SPL7  <----------DOF2 --------->ANAC58           --------->ARR11(3) ------>ZmHOX2a(2) <---------ANAC58 --------->LBD16   ---------->DOF2        ================================HOX2a_HOX2a <---------ANAC58--------->ANAC46  --------->YAB1          ------>ZmHOX2a(1) <---------AGP1 <-------- -->AGL2      <---------ARR14(2)  <---------ATHB12   <-----------ARR10    --------->HSFB2a(2)<-------   atggctcgtccagcactatccgcactttcaaactcaatgaaagcaaatcctcgcgactctcctctaaaatcttttgctagaactgatcttataacctttc  907300                                                                                                 ----                                                                                                <----     --------->LBD16                                                                            <---- --------->ARR14(2)                               --------->ARR14(1)                            <---- <---------ARR14(2)                               --------->CCA1(2)                             ----- ---------GLK1(1)                                --------->ARR11(3)                             <---- -------->GLK1(1)                                --------->ARR11(1)                             <---- ------>LBD16                                    --------->ARR14(2)          <---------ANAC58  ------ -------------AGL1                               <---------ARR14(2)          <---------ANAC46 <------ZmHOX2a(2) -DAG2                                           <---------GLK1(2)           <---------ANAC58<------- ---DOF2                            <---------O2 <---------ARR11(3)----------->GT1           --------   cgaaatccgaaaacatcagaaacaacatttcttcagagacttgggcatcaagatttgctatatacaaactcgtaaattttcttggacaagaagacgatcc  907400        <---------ICU4       <---------YAB1     --------->YAB1    <---------YAB1  --------->YAB1                                                                  --------->ANAC55(2) --------->ICU4                                                                   <---------ANAC55(2) <---------YAB1                                                                 --------->CCA1(2) ----->LBD16                                                                   --------->ARR11(3) -----ANAC55(2)                                                                <---------ARR11(3) -----ANAC58                                                                   --------->ARR14(2) -----ANAC46                                                                   <---------ARR14(2) ---->ANAC55(2)                                                              <-------TEIL -----ANAC55(1)                                                              ----------->ARR10 -----ANAC58                                                                <--------P           <--- >ZmHOX2a(2)                                                              ----------->GT1      ------ --ARR14(2)                 <-----------HVH21                            --------->DAG2       <------ ->ARR14(2)        <----------DOF2                                     ---------->DOF2   <----------DOF2   gtgattatcatcgttgctcatctttagctctgttacacaagaagacgatagaataaatgtgtattcaaatagcaaaaggtagatatgtattctttttttc  907500                                          <-----------GT1                                      <---------AHL20(2)                                      --------->AHL20(2)                                     <---------AHL20(1)                                     <---------AHL20(2)                                     --------->AHL20(2)                                     --------->AHL20(1)                                 <---------AHL20(1)                                 <---------AHL20(2)                                 --------->AHL20(2)                                 --------->AHL20(1)                                <---------AHL20(2)                                --------->AHL20(2)                            <---------AHL20(2)                                   <---------ATHB12                           --------->AHL20(2)                                    --------->ICU4                           <---------AHL20(2)                                  <---------ICU4      -- -------DOF2               --------->AHL20(1)        <---------WOX13(1)   <---------ATHB12      <---- ---->ID1                  <---------AHL20(1)       <------------CBF      --------->ICU4    <-------- -----GT1 --------->MYB46(3)--------->AHL20(2)  ---------->DOF2         <---------ICU4 <---------YAB1   ttttttttatcaacaaatgtgtattcaaataaaattaaatttatttactaaaaagattgactacaagttttgactaatgactaatgactatgactggact  907600                  <---------AHL20(2)             --------->ARR11(3)             <---------AHL20(1)                                                 <---------YAB1 <-----             --------->AHL20(1)                                                --------->AHL20(1)        --------->AHL20(2)                              <---------ARR11(3)    --------->AHL20(2)    --------->AHL20(2)                                  --------->ARR11(3)    <---------AHL20(2)    <   --------->AHL20(2)                             <-----------GT1             --------->ATHB51 <-----   <---------AHL20(2)   <-----------GT1          <---------YAB1         --------->TOE2(3)      ------ ------->AHL20(2)------------>CBF              --------->YAB1<---------CCA1(2)<---------ICU4  ------- ------DOF2  <---------ARR11(3)        ----------->HVH21--------->GLK1(2)    --------->ICU4   <------ -ZAT14--------->AHL20(2)            ----------->GT1   <---------GLK1(2)--------->YAB1    <---------LBD16   ttaaaataaataaaaaatattcaattttacaactatagagggtgacaaattataacaaaatctctatcttgttatcttaattattttagttattcggata  907700           ----------->GT1         <------------CBF    ----------->GT1  <---------ANAC46  <---------ANAC58  <---------ANAC58 <---------TOE2(3)              ----------->GT1            ----------->GT1 ----RVE1(1)                    <---------ANAC46          --------->DAG2            <---------AHL20(2) -----------GT1                --------->ALFIN1   ----------->GT1                  --------->AHL20(2) ----CCA1(1)          ---------->DOF2         <---------AHL20(2)              --------->YAB1 --->GLK1(1)      --------->AHL20(2)         --------->AHL20(2)           <---------AHL20(2) -->ARR14(2)     --------->AHL20(2)          <---------AHL20(2)          --------->AHL20(2)       <-- ---ARR14(2)     <---------AHL20(2)    ----------->GT1  ---------->DOF2  <---------AHL20(2)    <-----   tttaacgtgtaaattgtaaataaataaagagatgtggtgaaagataaataaatggtaaaaaaggtaaatttgaaattaaatcatatttaatcgaagttgt  907800             --------->ANAC58             --------->ANAC46                                                    <---------TOE2(3)       <----------DOF2                       <---------ANAC46        --------->ATHB12      <---------ANAC58                   ---------->DOF2             <---------ICU4      <---------ANAC58                 <---------MYB59               --------->ATHB51   <---------ZAT18                   ------->TEIL                    -------->ATHB1  <---------ANAC58                  ------>NtERF2                   <---------YAB1  <---------ANAC46                 --------->DEAR3(1)               <---------AHL20(2)  <---------ANAC58                --------->ANAC46                  --------->AHL20(1)    <---------GLK1(2) -------At5g28300                <---------LBD16                    <---------ATHB51  ---------->DOF2 ------HVH21 --------->ANAC58   <---------ANAC46                    --------->ICU4 <------ZmHOX2a(1)   cactgcgtgcttttcaagaaatgtcaaactatttacgcggacctaaagcgtatagttttcatgcgagaaaattattggaagttgaggaaaaagaatttcg  907900  Previous    Next  AGI:  At5g03580.1    Description:  polyadenylate-binding protein, putative / PABP, putative. similar to PAB7 (POLY(A) BINDING PROTEIN 7), RNA binding / translation initiation factor [Arabidopsis thaliana] (TAIR:AT2G36660.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74140.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62958.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 906955    to: 907421    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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