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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
----------->
GT1
--------->
YAB1
<---------
YAB1
--------->
YAB1
--------->
AHL20(1)
<---------
YAB1
<---------
AHL20(1)
--------->
AHL20(1)
<---------
AHL20(2)
--------->
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
--------->
YAB1
--------->
ICU4
<---------
AHL20(1)
--------->
HSFB2a(2)
attcttcttaatataatacattacattccaagtgtcaaaattgtagttcattttattaataagaaaaaatggtatatgtagaatgacaccttcttgaaca
879800
<-----------
GT1
<---------
AHL20(2)
<<<<<<<<<
GATA-1
--------->
AHL20(1)
<<<<<<<<<
GATA-3
----
---------->
DOF2
--------->
ARR11(3)
<<<<<<<<<
GATA-2
------
<---------
AHL20(2)
--------->
AHL20(2)
<---------
ZAT6
<-----------
GT1
<
--------->
AHL20(2)
--------->
AHL20(2)
<---------
TOE2(3)
<<<<<<<<<
GATA-4
<----------
DOF2
--------->
AHL20(2)
----------->
GT1
<---------
ARR11(3)
--------->
ARR14(2)
-------
gaaaacacagatttaatttcattttcagaaagaaaataaaataacatcttctaagattagtgttgacattgaatccacatttttgttactttagctataa
879900
<---------
ANAC58
<---------
AHL20(2)
--------->
ANAC58
--------->
ALFIN1
<---------
ANAC58
<---------
ANAC55(2)
--------->
ANAC58
<---------
ANAC58
<---------
ANAC58
----------->
GT1
--------->
AtLEC2
----->
ICU4
<---------
TOE2(3)
--------->
AHL20(2)
--------->
YAB1
--->
YAB1
--------->
YAB1
--------->
AHL20(2)
<-------
TEIL
--------->
YAB1
---------
ANAC46
--------->
ICU4
<---------
YAB1
--------->
ANAC55(2)
-------
-->
ICU4
<----------
DOF2
<------
ZmHOX2a(1)
<---------
ICU4
<---------
AHL20(2)
--------->
ANAC46
tgatgtgtgtcttttgaaattataaggatgcttatgagtatttaataagtaaaatactagtatttttttttatgtgattcataagacaagcaaaacaaaa
880000
----------->
GT1
<----------
ID1
------------------------>
ANAC81
---------->
DOF2
--------->
AHL20(2)
<---------
ANAC58
-
---------->
DOF2
<---------
AHL20(2)
--------->
AHL20(2)
<---------
ANAC58
<-
<---------------
AGL15
--------->
AHL20(2)
<-----------
RAV1(2)
--
--------------->
AGL15
--------->
AHL20(1)
<---------
ARR14(2)
<-
----------------->
AGL3
<---------
AHL20(2)
<---------
MYB46(3)
--
--->
DOF2
----------->
GT1
--------->
AHL20(2)
--------->
AHL20(2)
--------->
ALFIN1
--------->
AtMYB61
gttaaccaaaaaaagagaaaatcatttaaaaaaaattgaaaggaaaaaaataaaaacaagaagagaacaacaagtggttccaggcttgcaaaccaaaact
880100
--------->
REM1(1)
<------
------>
ZmHOX2a(1)
<------
--------->
TOE1(3)
<------
---------->
DOF2
------------>
CBF
-------->
LBD16
<----------
DOF2
--------->
ANAC58
--------
HSFB2a(2)
<---------
ICU4
--------->
ANAC58
------->
HSFB2a(2)
<----------
DOF2
--------->
ANAC46
--------
HSFC1(1)
----------->
GT1
<---------
ANAC58
----------->
TBP
<---------
YAB1
------->
HSFC1(1)
---------->
DOF2
<---------
ANAC58
--------->
AHL20(2)
<----------
tccagaaaggaatccttcaccaaaagttattttgggtttgcttcttttctcatcttttctcttacccattacattatatatacacacaatactattgtgt
880200
------>
MYB46(1)
------>
MYB83
<---------
MYB111(1)
--------->
AtMYB61
<---------
MYB111(2)
<---------
MYB55(2)
--------->
MYB46(3)
<---------
MYB46(2)
--------->
ANAC58
--------->
ANAC46
--------->
ANAC58
------>
MYB83
------>
MYB46(1)
--------->
ANAC46
--------->
AHL20(2)
--------->
MYB46(3)
--------->
AHL20(1)
------>
MYB46(1)
---
---
ANAC58
*
TSS
<---------
AHL20(2)
------>
MYB83
<-----
---
ANAC58
--------->
AHL20(2)
--------->
AtMYB61
------
---
ANAC46
--------->
YAB1
--------->
AHL20(2)
<---------
MYB59
<-------
TEIL
--
CBF
------------>
CBF
<---------
AHL20(1)
<-----------
GT1
<----------
DOF2
--------->
ARR14(2)
gtataaacaaatacaatcacata
caaatatatataaatacttagacatataaaccaaacccaccaaacactctttgatacttctctccatatatacatat
880300
<---------
YAB1
--------->
YAB1
------->
MYC3
<---------
ICU4
------->
MYC2
<------
ZmHOX2a(2)
<-------
MYC3
===========================
HOX2a_HOX2a
<---------
ARR11(3)
<-------
MYC2
<---------
ARR14(2)
------->
PIF5
--------->
ARR11(3)
<-------
PIF5
<------
ZmHOX2a(1)
--------->
ANAC58
------>
ANAC46
--------->
MYB52(1)
--------->
ANAC58
----
ARR14(2)
--------->
AHL20(2)
--------->
ALFIN1
--->
ARR14(2)
--------->
AHL20(2)
<------
ZmHOX2a(1)
----
acgacctcttgtgttcttgaaatacagagagcaaataaaaaacggaggatc
atgacaagtgttcttgaggagagtggagaccacgcgcgtcttgttctcc
880400
<------
NtERF2
<---------
At4g35610
--------->
At4g35610
<---------
WRKY12
--------->
TGA2(2)
--------->
TOE2(3)
<-----------
HVH21
<-----------
TGA1
--------->
ANAC46
--------->
ANAC58
--------->
ANAC58
--------->
TGA1a
------>
MYB46(1)
------>
MYB83
--------->
MYB52(1)
--------->
MYB55(1)
<---------
MYB111(2)
--------->
AtMYB61
<---------
MYB46(2)
<---------
MYB55(2)
--------
--------->
MYB46(3)
<---------
ZAT2
--------->
YAB1
<---------
MYB111(1)
<---------
YAB1
<------
ZmHOX2a(2)
<---------
MYB52(2)
--------->
YAB1
<---------
ARR14(2)
<---------
DOF5.7(2)
--------->
ANAC58
<---------
YAB1
--------->
ZAT14
<---------
WRKY12
--------->
ANAC58
------>
ZmHOX2a(1)
<---------
ZAT14
<---------
WRKY38(1)
--------->
ANAC46
<---------
ARR14(2)
--------->
At4g35610
--------->
At5g28300
--------->
ANAC58
--------->
ARR14(2)
<---------
At4g35610
<---------
ANAC46
-----
--------->
ANAC58
<---------
ANAC58
--------->
ZAT2
--------->
MYB52(2)
<--------
-->
ZmHOX2a(1)
------->
TEIL
<---------
ANAC58
------->
TEIL
--------->
ARR14(2)
----------->
HVH21
tcatcaagggcaaacgcaccaaacgtcagcgttctgcgtctcctcttatgatgaacgctgctgcagtatccagcgtttgtagcggtgaacgatcatcagt
880500
<---------
ANAC46
<---------
ZAT2
<---------
At4g35610
--------->
ARR11(3)
--------->
ZAT2
--------->
GLK1(1)
--------->
CCA1(2)
--------->
At4g35610
--------->
ARR14(2)
======
--------->
At4g35610
--------->
MYB52(1)
<---------
ANAC46
<-----
<---------
HSFC1(2)
-------->
P
<---------
ARR11(3)
--------
--------->
HSFC1(2)
<---------
At4g35610
<---------
ARR14(2)
--------
->
ATHB12
<---------
At4g35610
--------->
ANAC46
--------->
ARR11(1)
------>
ZmHOX2a(2)
---->
ALFIN1
--------->
GLK1(2)
<---------
GLK1(1)
----------->
ARR10
<---------
ARR11(3)
-
-
YAB1
>>>>>>>>>
TBF1
<---------
ANAC46
--------->
At4g35610
--------->
ARR11(3)
====================
ggaggtaagagaagaagaagctgctggtgaagtagaattccaaggagctaccgatgaagacgaagatatggcgaattgtctgatcttgttgtcgcaagga
880600
<---------
ANAC58
---------->
DOF2
<---------
ANAC58
--------->
ANAC58
<------
NtERF2
--------->
AtLEC2
<---------
MYB46(3)
--------->
ANAC58
------>
NtERF2
--------->
WOX13(1)
--------->
ABI4(2)
==========================
HOX2a_HOX2a
--------->
MYB52(1)
-
ZmHOX2a(1)
--------->
AtLEC2
--------->
ANAC46
->
ANAC58
--------->
ATHB12
--------->
ANAC58
->
ANAC58
--------->
DEAR3(1)
--------->
ANAC58
<---------
ZAT6
--------->
DOF2
<------
ZmHOX2a(2)
----------->
RAV1(1)
<---------
TOE1(3)
=
HOX2a_HOX2a
--------->
At4g35610
<----------
DOF2
<---------
MYB52(1)
<--------
catcaagcaaagagcagcgacgatcatttgtcgatgcagagaatgggtttctttagcaacaagaaaccggtggcttctctagggttagggctagacggtg
880700
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AGI:
At5g03510.1
Description:
zinc finger (C2H2 type) family protein. similar to nucleic acid binding / transcription factor/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G28200.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63005.1); contains InterPro domain Zinc finger, C2H2-like; (InterPro:IPR015880); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087)
Range:
from: 880224
to: 881304
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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