Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                  -----                                                                                               <-----                                                                                  <-----------GT1                                                      <---------AHL20(2)       <---------ARR14(2)                                                 <---------ARR11(3)            --------->ARR11(3)                                                 --------->ARR11(3)  --------->AHL20(2)      <-------                                          <xxxxxxxxxxxxxxxxsmallRNA(i)         <---------ARR11(3)                                      --------->ARR11(3)             <---------AHL20(2)      --------                       ----------->GT1<---------GLK1(2)          --------->AHL20(2)         ---------                xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ----------->GT1  --------->AHL20(2)   <---------YAB1           <-----------GT1  <---------TOE2(3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  <----------DOF2 --HSFB2a(2) <---------MYB52(2)       <---------ARR11(3)   <-----------HVH21   --------->ARR14(2)   agttttgttttagtaactaatcgtgtagttaatgtagaaagattttgggaagatagttaaatgtcaaatatttaattcgaagatttactttctaattatc  706900                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      <--------HAHB4      --------->AHL20(2)      --------->ATHB51                                                           <xxxxxxxxxxxxxxxxxxx      -------->ATHB1                                                  <---------WOX13(1) <---------At4g35610      --------->YAB1                                   xxxxxxxxxxxxxxxx>smallRNA(s)<xxxxxxxxxxxxxxxxx     <---------ATHB51                                  <---------AHL20(2)        <xxxxxxxxxxxxxxxxxxx     <---------YAB1                                   xxxxxxxxxxxxxxxx>smallRNA(i)------->TEIL      <     --------->ICU4<---------ZAT6                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <------ ---->YAB1<---------AHL20(2)          xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ----YAB1<---------AHL20(2)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxx>smallRNA(se3) --ICU4  --------->AHL20(2)   --------->At5g28300  <------ZmHOX2a(1)--------->ATHB12<xxxxxxxxxxxxxxxx ->YAB1 <---------YAB1       ----------->GT1     <---------TOE2(3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) >ICU4<---------ICU4      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)---------->DOF2   <xxxxxxxxxxxxxxxxxxx   aaaaacaattattaaatgctagtggcagtcacagtaaataagtctcaacttgaggatttatttcacaaagtgattgcaaaaatgtatatgtagatgatca  707000             --------->ARR11(3)             <---------ARR11(3)                                                           <----------ID1     <---------AHL20(2)                                                                ---------->DOF2     --------->AHL20(2)                                                               <---------ATHB12 xxxsmallRNA(si3)                                                                 <---------ATHB12 xxxxxsmallRNA(i2)   --------->AHL20(2)                                         --------->WOX13(1) xxxsmallRNA(i2)--------->AHL20(2)                                        --------->AHL20(2) ---------YAB1  <---------AHL20(2)                                        <---------AHL20(2) ---YAB1   <---------TOE2(3)             <---------AHL20(2)              <---------AHL20(2)         - xxxxxxxsmallRNA(i2) <---------AHL20(2) --------->AHL20(2)               --------->AHL20(2)     ----- xxxxsmallRNA(le3) <---------------AGL15<---------ATHB12                 <---------AHL20(1)   -------   atatgattttatttagattttatttttttagcaatacatctaataaatagttatctcatcgacaatataagtcaatttaattcaatcaataaagaacaaa  707100                                                                                <---------AHL20(2)                                                                                --------->AHL20(1)                                                                                --------->ARR11(3)                                                                                <---------AHL20(1)               ----------->GT1     --------->TOE2(3)                          <---------AHL20(1)       --------->AHL20(2)        <---------YAB1                               <---------AHL20(2)       <---------AHL20(2)  --------->ICU4                                    --------->YAB1  <---------ATHB12        <---------AHL20(2)                                <---------YAB1 -------->WOX13(1)    --------->YAB1------>ZmHOX2a(1)                   <-----------TBP       <------ ------>GT1  ---------->DOF2<---------ICU4      <---------TOE2(3) ---------->DOF2          <--------- --->DOF2  --------->YAB1--------->YAB1     <----------DOF2---------->DOF2--------->YAB1--------->CCA1(2)   gttaatcaatttatcaaaagttatttataaaaattatcctaaatttctttaagaaatagacaaaagtcaaaagcatttataatattttggatataacttt  707200                                                                                                    -                                                                                                    <                                                                                                    -                                                                                                    <                                                                                                    -                                                                                                    <                                                                                                  ---                                                                                                 ----                                                                    --------->CCA1(2)          ------                                                             <---------ANAC55(2)         ------>ZmHOX2a(1)                             --------->TOE2(3)            --------->WRKY12              <---------ALFIN1                      <-----------GT1                     ----------->HVH21           ------>ZmHOX2a(1)    <-------MYC3  ----------->TBP       ----------->GT1   ----------->TGA1 ==========================    ------->MYC3  --------->AHL20(2)>>>>>>>>>TBF1       <---------At4g35610---------->DOF2  ------>ZmHOX2a(1) ----DOF2   ------->TEIL   ------>MYB83>>>>>>>>>TBF1    --------->At4g35610<---------ZAT14 <---------ALFIN1 --GT1 <---------AtLEC2    ------>MYB46(1)             *TSS--------->MYB52(1)  <---------GLK1(2) ----   tggccatatgcatggaccctataaataccatccttgaagaagaagaaaaaaaaaactccgatgacggaagagatgagtaaagagtctcctcctcctcctc  707300                         <---------TGA1a                         --------->bZIP60(1)                         <---------bZIP60(2)                         --------->TGA1a                         <---------bZIP60(1)                         <---------DEAR3(1)                         --------->bZIP60(2)                         --------->O2 -------->TGA1a          <---------O2 ---------O2          ----------->HVH21 -------->bZIP60(1)  --------->SPL7 ---------bZIP60(1)--------->LBD16 -------->O2       <---------SPL7 ---------TGA1a  <---------LBD16 --->NtERF2     <---------DOF5.7(2) ----->DEAR3(1) --------->MYB52(1)                                                --------->O2 >ZmHOX2a(1)  <---------MYB52(1)                   <---------CCA1(2)       =================bZIP_DOF =========bZIP_DOF ----------->HVH21             <---------CCA1(2)         <----------DOF2       <--- ------->HVH21--------->DOF5.7(2)        --------->ETT(1)  --------->GLK1(2)      --------->TGA1a----   cgacgtcgttttcttcgttaccggacgacgtcgctctcgattgtcgggctcgtatatcgagattccattatccaactctttctctcgtctccaagggttt  707400                                        <----------DOF2                                       --------->TOE2(3)                                      <-----------------AG                     --------->At4g35610------>ZmHOX2a(1)                     --------->ZAT2   ----------------->AGL2                     <---------ZAT2   ----------------->AGL1                     --------->GLK1(1)<-----------------AGL1                 --------->LBD16     <------ZmHOX2a(2)                 --------->ANAC46   <---------ARR14(2)                --------->LBD16   --------->ANAC58                --------->HSFB2a(2) --------->ARR14(2)             ------>NtERF2 --------->ANAC46             --------->ABI4(1)    --------->ANAC58                                 ----------->GT1            <---------ALFIN1------>NtERF2                                  <---------ANAC58            --------->DEAR3(1)----------->RAV1(1)                          <---------ANAC58 --------->GLK1(1)--------->LBD16 --------->ANAC46                        --------->At4g35610 ------HSFB2a(2)<---------LBD16 <---------ALFIN1                     <---------ANAC58         ------- ----->HSFB2a(2)<---------HSFB2a(2) <---------ARR11(3)               <---------ANAC58         -------   cagaactctcatcgcctccccggagctcgaggccacacgatcctttatcggaaaaccagagaatcacctctgcgtctgcttgaggctgtataaaaaccct  707500                                                                                ------>ZmHOX2a(1)                                                                            --------->ARR11(3)                                                                            --------->ARR14(2)                                                                            <---------ARR14(2)                                                                            <---------ARR11(3)                                                                       ------>MYB83                                                                       ------>MYB46(1)                                                                      ----------->RAV1(1)                                                                     ------->GAMYB            <------          <-------TEIL       --------->LBD16                        --------->MYB46(3)       <-------GAMYB  ------>ZmHOX2a(1)  --------->LBD16                             ------>ZmHOX2a(1)      --------->ANAC46 -->TOE2(3)         <-----------------AGL1                      <---------MYB59--------->TOE2(3) -->TOE1(3)      <-----------GT1                   <-----------HVH21<---------MYB55(2)  ----------->HVH21   aatcctctctggttcatattttccccaattccgaaacagaaattgaaacccatcgtcccatggtttcctaaccaacaatatcctcaatacccgaccgttg  707600                               <---------ARR14(2)                             <---------MYB46(3)                   --------->ANAC46                   --------->YAB1                   --------->ANAC55(2)                  <-------TEIL --------->ARR14(2)    ----------->RAV1(1)               --------->CCA1(2)                     --------->MYB52(1)                       <------NtERF2               --------->GLK1(1)                  --------->ANAC58                          <--------              <---------ARR14(2)                  --------->ANAC58                          <--------              --------->ARR11(3)        <------ZmHOX2a(1)   --------->ALFIN1                <--------              --------->ARR14(2)    <---------MYB52(1)  ------->GAMYB    <---------YAB1    <--------- ---MYB52(1)  <---------ARR11(3) <-------TEIL <------ZmHOX2a(1)       <---------YAB1 <---------YAB1   tctcaaatggttcacagatatacataatcggtggattcgttaggagaaggagaagcaacagagtgtcgatttttgattatcgaacttatcaatggcgtag  707700                                   --------->TGA1a                                   --------->O2                --------->ATHB12                                  ------>NtERF2               <---------YAB1                                  --------->LBD16        ------>ZmHOX2a(2)                     <-----                                  <------NtERF2         --------->CCA1(2)                      ------             <---------WRKY12    --------->DEAR3(1)     <------ZmHOX2a(2)                      <-----      ---------->DOF2           <------NtERF2          --------->AGP1                     -----------      =======================================bZIP_DOF  --------->ARR11(3)             --------->AtLEC2  --------->LBD16              ------>NtERF2           <---------AGP1        <---------At4g35610 -ANAC46   <-----------HVH21   --------->LBD16         <---------ARR11(3)  <-----------RAV1(2) ------ -ANAC58  <---------ANAC58    --------->ANAC46    --------->At5g28300      ========================== -ANAC58  <---------ANAC58   <---------LBD16     ----------->GT1 <---------WOX13(1) <---------ALFIN1 --------------TaNAC69(2) <-----------GT1      <---------------------WRI1<-----------HVH21===========   actccccaaaatgcgtcaacctcgagtttatcccgccgcgtctgtaatcgacggtaagatctatgtgattggaggcttcagaggctccatgcccacagat  707800  Previous    Next  AGI:  At5g03020.1    Description:  kelch repeat-containing F-box family protein. Identical to F-box/Kelch-repeat protein At5g03020 [Arabidopsis Thaliana] (GB:Q9LYY3;GB:Q8GX75); similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT5G02990.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71765.1); contains InterPro domain Kelch repeat type 1 (InterPro:IPR006652); contains InterPro domain Kelch-type beta propeller (InterPro:IPR015915); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain Kelch related (InterPro:IPR013089); contains InterPro domain Kelch (InterPro:IPR006651); contains InterPro dom Range:  from: 707255    to: 708394    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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