Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Publications Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   1        10        20        30        40        50        60        70        80        90        100                                                            ----------->GT1    ------>MYB46                                        <----------DOF2    ------>MYB83                           ------>ZmHOX2a(2) --->GT1                                  <------ZmHOX2a(2)   aaaaccaaactcgtagacaaaataatagaccactagcctgcacgatctgcttcattaactttgtaaatttattttgatttatcaatgcgataatagacgc  18236400                                                    ----------->RAV1(1)                                                  <------NtERF2                                                 ------>NtERF2                                               <------NtERF2             <-----------ARR10                ------>NtERF2         ------>NtERF2                       --------->O2        ------>NtERF2                        <---------O2                 ------->TEIL    <-----------GT1   ------>ZmHOX2a(1)   ----------->HVH21        <-------TEIL       <----------DOF2   agattttttccggccaatcttctcctccgagtagctaaaccctagcgacggcggcaacaatggtctagattcaacgtatcgtttcgtggtttatcgggta  18236500                      ---------->DOF2               <-----------GT1                 ------>ZmHOX2a(1)          <-------GAMYB             <-----------GT1            <-----------GT1   tttctagtttccaattctcctcatcaaagtttcagtttttaatcaccgttgatttttctattcaatggtacttgaattttctctggaatgatattcaatt  18236600                                                    <----------DOF2                                                 ---------->ID1                                           <-----------GT1                                    <------------------------ANAC81                               <-----------GT1<----------DOF2            ----------------->AGL1 <----------DOF2----------------->AG                    <-------TEIL   gttctgttttgattgcctgattgattacagtattctccttttttttttcttttccttttctgtgaatttatgagtttatggatatactaatatacatata  18236700             <------------CBF        ------>ZmHOX2a(2)       <------ZmHOX2a(2)                                                           <----------DOF2      --------->AGP1                                      ------>ZmHOX2a(1)  ----------->HVH21    ----------->ARR10                             ---------->DOF2    <------------CBF *TSS   tatcttgagatctgccattggtcttgtttttggcctagtataatggtttgacaaaagctccttctatcttgtattgaaggtgacactttggtgagaggga  18236800                                                                <-----------RAV1(2)                                                             <-----------RAV1(2)                                                  <------ZmHOX2a(2)                         <--------                                           ------->GAMYB   ----------->RAV1(1)         ---------->ID1        ---------->DOF2                  -------->P        =================RAV   <----------DOF2   gagtatttgtgaaagaaatcaatggatttagattttgatgatcaaccctcggatcatgctgcaccagcaggtaattggggttttcttttgtccactttca  18236900                                                              <------MYB83    <---------AtLEC2   --------->ALFIN1------->TEIL           <------MYB46       ---------->DOF2   <-------TEIL      <-----------RAV1(1)                     --------->ALFIN1   ---------->DOF2 --DOF2   <----------DOF2             XXXXXXXXXXXXXXXXXXXX>MIR865-5P ----------->GT1            -----   ttagtttcatggctttttgtttgatgtggctgaaacttatgaatttggatttaatagttagggctggtgcaaggtttaaaccaaaaggcagaccacaacc  18237000                                                          ==================================HOX2a_HOX2a                                                          <------ZmHOX2a(1)                                                          =================================HOX2a_HOX2a                                                <-----------RAV1(1)                                                ===================RAV               ------>ZmHOX2a(2)                                             ----------->HVH21                      <------ZmHOX2a(2)                           ------->GAMYB   =================RAV                    <---------AGP1                       <---------ALFIN1    ----------->RAV1(2)                     <-----------ARR10 -->GAMYB        <----------DOF2   <---------ALFIN1    <-----------RAV1(2)---------->DOF2---------->ID1   caagaagaagcaagtctctctttccacaacccaaacaacactctcccctgatgttgcccaggaaaaactctcaacacaaagtgaagatctcgtccctcta  18237100                                            -------->P                                            ------>MYB46           <----------TaMYB80               ------>MYB83   <------ZmHOX2a(2)                      ------->GAMYB      <-----------RAV1(1)   gacggatcatcggagattcccagcagttttgtttcttccctcaaccaacttgtttattattatatgttgttctgaagttggcagtgttttaagatgtgga  18237200                                                                  <<<<<<<<<<<<<<<<<LFY                        ----------->RAV1(2)                       >>>>>>>>>>>>>>>>>LFY       --------                   <-----------GT1     ----------------->AGL1     -------->P             ----------->GT1                 <----------DOF2     --------->ALFIN1    <-----------GT1                ----------->GT1   ttctttctatttgcagatgctttaccttctgagactaatgtgccggatagtggaagtattaacaaatctaccattggaacattatcagaagaggtaaaag  18237300  Previous    Next  AGI:  At4g39160.1    Description:  DNA binding / transcription factor. similar to unnamed protein product [Vitis vinifera] (GB:CAO47585.1); contains InterPro domain SANT, DNA-binding; (InterPro:IPR001005); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding (InterPro:IPR014778) Range:  from: 18236786    to: 18239812    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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