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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                     <-----------RAV1(2)
                                                   <-----------HVH21
                                                   <-----------TGA1
                                                  <---------ETT(2)
                                                  --------->ETT(2)
                                                  --------->TGA1a
                                               --------->DEAR3(1)
          ================HOX2a_HOX2a         --------->DEAR3(2)
         =================HOX2a_HOX2a         --------->MYB46(3)
         <------ZmHOX2a(2)                    <------NtERF2
        --------->ARR14(2)                  <---------ALFIN1
        <---------AGP1                      --------->DEAR3(1)
        <---------ARR14(2)                 <------NtERF2
        --------->AGP1                     --------->ATERF1(1)
        <---------ARR11(3)                ------>NtERF2
        --------->ARR11(3)                <---------ATERF1(1)
       <---------CCA1(2)                 --------->ANAC46
      ----------->ARR10               ------>ZmHOX2a(2)
-------->GLK1(1)                      =========================HOX2a_HOX2a
---------GLK1(1)                     <------ZmHOX2a(2)
------->ARR14(2)   =========================HOX2a_HOX2a
-----ANAC55(2)     <------ZmHOX2a(1) ==========================HOX2a_HOX2a                      ----
---->ANAC58        ==========================HOX2a_HOX2a                                       -----
---->ANAC58----------->HVH21        <---------ARR11(3)              --------->RAP2.6(2)      -------
----LBD16--------->CCA1(2)<---------WRKY38(1)------>NtERF2    <---------REM1(1)           --------->MYB46(3)
--ARR14(2)------>ZmHOX2a(2)         --------->ARR11(3)  <------ZmHOX2a(1)      --------->HSFB2a(2)
 
ggaaaccctcagatctgatggaggactggtgaacgaagagatcgtcgccaccgtcgtcaggagtgatgaagccgaaacccttctgggtatcaaaccactt  18072800
                           <---------MYB52(1)
                          <-------GAMYB
                       ------>NtERF2
                      <---------ALFIN1
                      --------->DEAR3(1)
                      --------->DREB2C(2)
                      ------->GAMYB
                     --------->MYB46(3)
                   <---------ALFIN1--------->At4g35610                                        ------
          <---------RAP2.3(1)      <---------At4g35610                                        ------
          ------>NtERF2--------->ABI4(1)                                        --------->ARR11(3)
  ------>NtERF2    --------->DEAR3(1)             <---------GLK1(2)             <---------ARR11(3)
----->MYB52(1)     --------->AtMYB61          <---------WOX13(1)    <----------DOF2           ------
------>HVH21      --------->MYB46(3)        --------->ATHB12        <---------DAG2          --------
-->O2<----------DOF2--------->ABI4(1)      <---------YAB1    <-----------GT1   <---------CCA1(2)
 
gacggagcctttgcgcctctcaccaccgccgttgtctccgctcattttgattggaatctcttaataactcacttttttctctaaatctttaaaaaaaacg  18072900
                                                                                              ------
                                                                                              ------
                                                                                              ------
                                                                                             -------
                                                                                             ------>MYB46(1)
                                                                                             ------>MYB83
                                                                                            <-------
                                                                                            --------
                                                                                           ---------
                                                                                           <--------
                                                                                           ---------
                                                                                           <--------
                                                                                          --------->ANAC58
                                                                                       --------->TGA2(2)
                                                                                      <-----------HVH21
                                                                                      <-----------TGA1
                                                                                     --------->bZIP60(2)
                                                                                     --------->ANAC58
                                                                                     <<<<<<<<<<HY5
                                                                                     --------->ANAC55(2)
                                                                                     <---------ANAC55(2)
                                                                                     --------->ANAC46
                                                                                     ===============
                                                                                     --------->bZIP60(1)
                                                                                     --------->ANAC55(1)
                                                                                     <---------bZIP60(1)
                                                                                     <---------TGA1a
                                                     --------->ARR14(2)              --------->TGA1a
                                      <---------At4g35610                            --------->ANAC58
                                      --------->At4g35610                            --------->O2
        <---------ARR14(2)         <---------ZAT2    <---------ARR14(2)              <---------O2
        --------->ARR14(2)         --------->ZAT2 <---------ANAC46                  <-----------bZIP910(1)
--->ANAC46                     --------->ANAC46   <---------ANAC58                  <-----------bZIP911(1)
--->ANAC58                    ------>ZmHOX2a(1)   <---------ANAC58                  <-----------STF1
--->ANAC58       <---------GLK1(1) <---------At4g35610         --------->ALFIN1    <---------ALFIN1
->MYB52(1)       --------->GLK1(1) --------->At4g35610   <------ZmHOX2a(1)  <---------YAB1--------->ANAC58
 
aaaccctagaaaatactctgaaatctctctctcctcgcagctgctgtttatatgcgtataggaagggtgtggcaagggtatgactgccacgtcacccacc  18073000
                                                     ------>ZmHOX2a(2)
                                                    <<<<<<<<<GATA-2
--->ANAC58                                          <<<<<<<<<GATA-4
--->ANAC46                                          <------ZmHOX2a(2)
--->ANAC58                        --------->AHL20(2)<<<<<<<<<GATA-1
->P                               <---------AHL20(2)<<<<<<<<<GATA-3
--ALFIN1<-----------GT1       --------->AHL20(2)   <---------ARR11(3)
->MYB55(1)               <------ZmHOX2a(1)         <---------AGP1
>DEAR3(1)                ==================================HOX2a_HOX2a
-MYB111(2)               ===================================HOX2a_HOX2a
>MYB46(3)               ----------->GT1     <---------AHL20(2)--------------->AGL15
-MYB55(2)  <---------ANAC58   <---------AHL20(2)   --------->ARR11(3)
==MYC_MYB  <---------ANAC58   --------->AHL20(1)  <---------CCA1(2)     <---------MYB46(3)  <-------
 
ccaattcattttttccttgtttccaagaggaaataaaataaatgtttttatttagatctctatttctatatatgtttgttcgatttttgtctatttttct  18073100
                                                                               --------->GLK1(1)
                                                                              --------->ARR14(2)
                                                                              <---------ARR11(3)
                                                                <---------ARR11(3)
                                                                --------->GLK1(2)
                                                                --------->ARR11(3)
                                                           --------->AHL20(2) <---------ARR14(2)
                                                          --------->AHL20(2)  --------->ARR11(3)
                                                      <---------AHL20(2)    <---------TOE2(3)
                                                      --------->AHL20(2)    <---------YAB1 ---------
                                 ----------->GT1 <---------ARR11(3)        *TSS--------->CCA1(2)
                        --------->KAN4(2)    <---------ANAC58  --------->RVE1(1)           <--------
----GT1          --------->At4g35610         <---------ANAC58  --------->CCA1(1)    --------->LBD16
 
aaattgccttcaaaaaaaacatctgcacattccgaattgtatattcgagcgtgatattaaaataaaaaatctcgcgattaagatacccagaaaattaaaa  18073200
                                                        ----------->GT1
                                                       --------->DAG2
                                                 ---------->DOF2
                                       --------->AHL20(2)
                                       --------->AHL20(1)
        <---------ANAC46               <---------AHL20(2)
  --------->AHL20(2)      --------->ARR14(2) ---------->DOF2 ----------->GT1                    <---
--------->TOE2(3)         <---------ARR14(2)<---------AHL20(2)     ---------->DOF2              <---
>AHL20(2) <---------MYB52(1)      <---------MYB52(2)  ---------->DOF2   ---------->DOF2        -----
-AHL20(2)<-------GAMYB    ------->TEIL <---------AHL20(1)   ----------->GT1   <------ZmHOX2a(1)-----
 
aaacataaatttcgttgatttcgaaaatgaatctgcaactaaaatattaaaagaaagaaaagtaagttaaaaaagaaaagaggagttagaaaatgggcca  18073300
                                                                                   <---------ANAC58
                                                                                   <---------ANAC58
                                                                                 <------MYB46(1)
                                                                               <--------P
                                                                               <---------MYB52(1)
                               <---------HSFB2a(2)                             --------->ALFIN1
                               --------->HSFB2a(2)                            <-------GAMYB
                              <---------ANAC46                        <---------At4g35610
                              <---------LBD16                         --------->At4g35610
                         <---------------AGL15              --------->ANAC58 <---------MYB46(3)
                         --------------->AGL15           <---------ZAT2      <---------DEAR3(2)
<-------MYC3            <-----------------AGL2           --------->ZAT2   ------------>AtMYB77
------->MYC3            ----------------->AG            --------->ANAC58--------->HSFB2a(2)
---NtERF2               ----------------->AGL2 --------->ATHB12      ------->TEIL<------MYB83
------ZAT2              ----------------->AGL1<------ZmHOX2a(2) --------->At4g35610<---------ANAC46
---->ANAC58        <---------WOX13(1)         <---------YAB1--------->ANAC58<---------DEAR3(1)
---->ANAC58      --------->ATHB12 ---------->DOF2       --------->ANAC58<---------HSFB2a(2)   <-----
 
gcatgtgataaggcttaaattgattaatccatttcgggaaagagaatggatcattggcccagcaagcagttgcatctggacggttggggtgtttttcacg  18073400
                                                                                   <---------AHL20(2)
               --------->GLK1(2)                                                  <---------YAB1
              <---------GLK1(2)                                                  <---------AHL20(2)
              --------->ARR14(2)                                               <---------YAB1
              <---------ARR14(2)                                             <---------AHL20(2)
             <---------At4g35610                                            --------->AHL20(2)
            ----------->ARR10                                               <---------AHL20(2)
          <---------MYB52(1)                                                <---------AHL20(1)
          <------NtERF2                                                     --------->AHL20(1)
         <-----------HVH21   ------>ZmHOX2a(2)                           --------->AHL20(2)
         <---------RAP2.6(3)<------ZmHOX2a(2)                            <---------AHL20(2)
        --------->ATERF1(2) --------->CCA1(2)                           <---------AHL20(2)
        --------->RAP2.3(2)<---------AGP1                               --------->AHL20(2)
        <---------ATERF1(2)--------->AGP1                               <---------AHL20(1)
        --------->RAP2.3(3)--------->ARR11(3)                        --------->WOX13(1)       <-----
      <---------At4g35610  <---------ARR14(2)  --------->LBD16     <------ZmHOX2a(2)       <--------
 --------->GLK1(1)         --------->ARR14(2)  <---------LBD16    <---------ARR11(3)   --------->AHL20(2)
 <---------GLK1(1)<---------YAB1 ---------->DOF2                  --------->ARR11(3)   <---------AHL20(2)
----O2--------->At4g35610  <---------ARR11(3)<---------LBD16  ---------->DOF2--------->AHL20(2)
 
agggatatcagccgtcagattctgattttagatctgaaaagctagctctctggggaatagagaaacaaagatcaattaatttatttttatttttttactt  18073500
                                                            <---------At4g35610
                                                            --------->At4g35610
                                                           --------->ANAC58
                                                           --------->ANAC58
                                                         --------->TGA2(2)
                                                        --------->TOE2(3)
                                                        <-----------TGA1
                                                        <-----------HVH21
                                                       --------->TGA1a
                                                       --------->ANAC58
                                                       <---------O2
                                                       --------->O2
                                                  --------->ANAC58             <----------DOF2
                                                  --------->ANAC46       <---------ARR11(3)
                                       ---------->DOF2 --------->ANAC58  <---------ARR14(2)
                 <-----------RAV1(1)   ==========================bZIP_DOF--------->ARR14(2)
         <---------AHL20(1)         --------->TOE2(3)  ===================================bZIP_DOF
<-----------RAV1(1)       <---------WRKY38(1)     --------->ANAC58  --------->WRKY18(1)
-----DOF2<---------AHL20(2)      ----------->RAV1(1)   --------->bZIP60(2)<-----------GT1
---GT1   --------->AHL20(2)  --------->MYB46(3)   --------->AtLEC2----------->GT1           <-------
 
tgtatgttgtattttattttttgttgcagtcaacaacaacattaaagaatgacatgcaacgtcagcaactggtcaatatactcttttcaaaattttctca  18073600
                                                                                      <---------ICU4
                                          <-------TEIL                     ------>MYB46(1)
                                       --------->ANAC46                    ------>MYB83
                                       --------->ANAC58                  <---------MYB59
                                       --------->ANAC58   --------->ARR14(2)         <---------YAB1
                                      --------------->AtSPL8<-------TEIL <---------MYB46(2)
                                 <----------DOF2          <---------GLK1(2)--------->MYB52(1)
                              <---------ALFIN1            <---------ARR14(2)       --------->YAB1
                         <---------MYB46(3)    <---------AHL20(2)     <-----------GT1--------->ICU4
----GT1               <-----------RAV1(1) ------->TEIL   --------->At4g35610      <---------YAB1----
 
atcttgtggtcaaaataagcattaactgttgttccactttccacgtacattttatgaggcagattcacaaattttaccaaacagtatgataattgtatga  18073700
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AGI:  At4g38680.1   
Description:  CSDP2/GRP2 (COLD SHOCK DOMAIN PROTEIN 2, GLYCINE RICH PROTEIN 2); nucleic acid binding. similar to ATGRP2B (GLYCINE-RICH PROTEIN 2B), nucleic acid binding [Arabidopsis thaliana] (TAIR:AT2G21060.1); similar to putative glycine-rich protein [Picea glauca] (GB:ABA54143.1); contains InterPro domain Cold shock protein; (InterPro:IPR011129); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain Cold-shock protein, DNA-binding; (InterPro:IPR002059); contains InterPro domain Nucleic acid-binding, OB-fold (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold-like (InterPro:IPR016027)
Range:  from: 18071878    to: 18073176    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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