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AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                       --------->ATHB12
                      <---------YAB1
                      ------>ZmHOX2a(1)                                                           <-
              --------->LBD16                                  ----------->HVH21                  <-
             --------->LBD16                                <-----------HVH21                  <----
        <---------GLK1(1)                                   <-----------TGA1                <-------
        --------->GLK1(1)<---------WOX13(1)          --------->ANAC58                      ---------
   <---------LBD16--------->ARR14(2)            --------->HSFB2a(2)             <---------DAG2<-----
  --------->ALFIN1<---------ARR14(2)            <---------HSFB2a(2)          <-----------GT1--------
------->LBD16<---------ANAC46      <---------ZAT2    --------->ANAC58 <---------ZAT14   <---------TOE2(3)
------LBD16 <---------LBD16        --------->ZAT2  <------ZmHOX2a(1)  --------->ZAT14   <---------TOE1(2)
 
ccggtttgggggtttcccgtgaatcctgattgactccaagcttgaactgttcgaggaagccatcgtcagacagagtagtatcactctttccaaggttgtg  17901900
                                                            <------MYB83
                                             --------->ANAC58          <---------HSFB2a(2)
                                             --------->ANAC46          --------->HSFB2a(2)
            <---------MYB46(3)               --------->ANAC58      --------->ZAT18
            <------MYB46(1)         ------>ZmHOX2a(2)       <---------ANAC58
            <------MYB83           <---------GLK1(1)        <---------ANAC46
        <---------MYB46(3)         --------->GLK1(1)        <---------ANAC58
       <---------ANAC46            <------ZmHOX2a(2)        <------MYB46(1)       --------->At4g35610
       <---------ANAC58           <---------ARR14(3)       --------->MYB59        <---------At4g35610
--------ANAC58                    <-----------ARR10        <---------MYB46(3)    <-----------RAV1(1)
--------ANAC58                    --------->ARR14(3)      <---------ANAC46    <---------ARR14(2)
-----ZAT18 --------->ALFIN1       <---------ARR11(3)     <---------MYB52(1)   --------->ARR14(2)
--MYB46(3) <---------AtMYB61      <---------AGP1        <-------GAMYB <---------LBD16<---------At4g35610
>ALFIN1<---------ANAC58           --------->ARR14(2)   <---------MYB46(3)   --------->HSFB2a(1)
----ANAC46<---------MYB52(1)      --------->ARR11(3)   <-----------RAV1(1)  <---------HSFC1(2)   <--
->ALFIN1--------->MYB55(2)        <---------ARR14(2)   <---------DEAR3(2)   <---------HSFB2a(1) ----
 
ggcttgtctagcgggtggttctctgtgagagttggaagatctctcccctcgcaagggtctgttgggtaagggctctggagggttctgctgctcgtctact  17902000
                                                        --------->ARR14(2)
                                                        --------->GLK1(2)
                                           <---------ANAC46
                                           --------->DEAR3(1)
                                           <---------DEAR3(1)
                                          <------NtERF2 <-----------ARR10
                                          --------->ATERF1(1)
                                ------>NtERF2        --------->ANAC58
                               --------->LBD16       --------->ANAC58
            <---------MYB52(1)<---------ANAC46       --------->ANAC46
           <-------GAMYB      <---------ANAC58     --------->ZAT6                      <---------DEAR3(1)
        <------NtERF2         <---------ANAC58----------->GT1                         --------->RAP2.6(3)
       ------>NtERF2         <---------LBD16 <------NtERF2                  --------->AtLEC2
      <---------ETT(2)   --------->ALFIN1------>NtERF2  <---------ARR14(2)<---------ANAC46
      --------->ETT(2)   <-----------RAV1(1)------>NtERF2                 <---------ANAC58
    <-----------HVH21  <---------ANAC58  <---------RAP2.3(1)              <---------ANAC58        <-
   <-----------RAV1(1) <---------ANAC58  <---------ATERF1(1)         --------->At4g35610   <--------
-------WRKY18(1)       <---------ANAC46 <---------DEAR3(1)  --------->At4g35610      --------->MYB52(1)
------->HVH21      ---------->DOF2      --------->ANAC46------->TEIL <---------At4g35610------>NtERF2
 
tgaccattgtcgcccgttgagagaaagcgtgttgcggacatcgacggcgtcgtaacacgaatctgcttcgccatctgccttgcaaaaacgacggctttgg  17902100
                                                                                               <----
                                                                                              <-----
                                                                                     --------->ANAC58
                    ------>NtERF2                                                    ===============
                    <---------At4g35610              *TSS                            <---------O2
              --------->At4g35610               --------->ARR14(2)                   <---------ANAC55(2)
              <---------At4g35610               <---------GLK1(2)                    --------->O2
           --------->DOF5.7(2)       <---------TOE1(3) <---------ANAC46              --------->ANAC58
           <---------MYB52(1)  --------->DAG2   --------->ARR11(3)                   --------->ANAC46
     <------NtERF2  --------->At4g35610         <---------ARR14(2)                   --------->ANAC55(2)
-----ZmHOX2a(1) <-----------RAV1(1)  <---------TOE2(3)<---------LBD16                --------->TGA1a
--DOF2    --------->TOE2(3)   ---------->DOF2   <---------ARR11(3)                   <---------TGA1a
 
aggaaggcaccatcgttatctgccgctgattcgaaaagttagggttttgcagattttgacggagagagaagaaggggagggtttagtcacgcgagaagga  17902200
                                                                --------->REM1(2)
                                                               --------->ALFIN1
                                                              --------->LBD16
                                                             <---------ANAC58
                                                             <---------ANAC46
                                                             <---------ANAC58
                                                     <---------ALFIN1
                                                <---------ARR11(3)
                                                --------->ARR11(3)
                                                <---------ARR14(2)
                        <-----------RAV1(2)     --------->ARR14(2)
                       <---------ZAT14         <---------HSFB2a(1)
          ------->GAMYB<---------REM1(2)       <---------HSFC1(2)
    --------->CCA1(2)  --------->ZAT14         --------->HSFC1(2)
--------CBF        --------->ZAT6              --------->HSFB2a(1)*TSS
-ZmHOX2a(1)      <-----------GT1         ---------->DOF2   ------>ZmHOX2a(1)     <----------DOF2
==================MYC_MYB            ---------->DOF2------>ZmHOX2a(1)    <---------GLK1(2)       <--
 
ttgagggatataacagtcatttactctacagggggtataagaaagaaagaaggtcctcactcctccgtgtggataagcttctcactttcagttcaattgg  17902300
                                                                                              <-----
      --------->DAG2                                                                          ------
    <---------ARR14(2)                                                                        <-----
    ---------->DOF2                                                                --------->ALFIN1
    --------->ARR14(2)                                                           <---------ANAC58
   <------NtERF2                              ---------->DOF2         --------->ANAC58        <-----
  --------->LBD16             ------>ZmHOX2a(1)                       --------->ANAC58<---------REM1(1)
 --------->RAP2.6(2) --------->At5g28300<---------ANAC58       --------------->AGL15<-------GAMYB
<---------LBD16     ----------->GT1     <---------ANAC46 --------->YAB1          <---------ANAC46
-------GLK1(1) ------>ZmHOX2a(1)        <---------ANAC58<---------ATHB12         <---------ANAC58
 
atagccggaaaggctctcctccaaggtaaattcctctctacttccttgttaaagctcgaatcatctctaagttaagcaaaattggtgtgttgtagtggcg  17902400
                                                                            --------->ARR11(3)
                       --------->At4g35610                                  <---------ARR11(3)
        ----------->HVH21                                            <---------ETT(2)
      <---------At4g35610                                          --------->ARR14(2)
      --------->At4g35610      --------->ALFIN1                --------->LBD16
----ANAC46          --------->At4g35610         <---------TOE2(3)  <---------ARR14(2)
----->GT1          --------->ANAC46       <----------ID1     ------>ZmHOX2a(2)
----ANAC58    <---------ARR14(2)  --------->ARR14(2)       --------->ARR14(2)
----ANAC58    --------->ARR14(2)  <---------ARR14(2)       <---------ARR14(2)
 
tttatatggaggtgacaaatacgagcagcatcatgtggttcttcagggacaaaggtttcgatgatccgagtatcgacaagatgttgagaaaatgcaaaca  17902500
                        --------->At4g35610
                        <---------At4g35610
                      <---------bZIP60(1)
                 <---------O2
                 --------->O2
                 <---------bZIP60(2)                     <------MYB83
          ---------->DOF2       --------->TOE1(2)        <------MYB46(1)
    --------->DAG2    --------->bZIP60(1)----------->RAV1(2)
  ---------->DOF2--------->ALFIN1       --------->MYB52(1)                                       ---
 
gttggaaaaggctcaaagcgatgtggcatcagaaaactgggactacctgagtaacattgttggtatccaagagagaaaactcccttacatcgtctctcga  17902600
                 --------->ANAC46
                 --------->ANAC58                                                      <---------ANAC58
                 --------->ANAC58                                                      <---------ANAC58
               <-----------GT1                                                --------->HSFB2a(2)
             <---------DAG2                                                   <---------HSFB2a(2)
         ------>ZmHOX2a(1)                                                   <---------LBD16------>NtERF2
     --------->ARR11(3)                                                     ------>ZmHOX2a(1)
     <---------ARR11(3)                                                     <---------LBD16---------
     <---------ARR14(2)                                  --------->ZAT14 <---------HSFB2a(1)--------
     --------->ARR14(2)                    <---------MYB46(3)           --------->ARR14(2) ---------
--->NtERF2   <----------DOF2              <---------AtMYB61             <---------ARR14(2) ---------
 
tgccccaaaatcctgactttacgcctcgatgagagactcatcccgatggtcgagtgcctctccagtcttggaaggaatcctcgggaagttgcttccgcca  17902700
                                                                           --------->ALFIN1
                                                                         <---------ANAC58
                                                                         <---------ANAC46
                                                                         <------MYB46(1)
                                                                         <------MYB83
                                                                         <---------ANAC55(1)
                                                                         <---------ANAC58
                                                                        --------->MYB55(2)
   <<<<<<<<<SARD1                                                       --------->MYB111(1)
   <<<<<<<<<CBP60g                                                      --------->MYB52(2)
  ------>MYB46(1)                 <------ZmHOX2a(1)                    <---------MYB55(1)
  ------>MYB83                  <---------ANAC46                      <---------MYB52(1)
<---------MYB59              --------->ALFIN1            <----------DOF2--------->MYB46(2)
>ANAC46                    <---------ANAC46             <---------ANAC58--------->MYB59
->LBD16                    <---------ANAC58             <---------ANAC58<---------AtMYB61
>ANAC58               --------->YAB1         ---------->ID1          <-----------HVH21<-------------
>ANAC58  ------>ZmHOX2a(1) <---------ANAC58 <-----------HVH21<----------DOF2   ----------->RAV1(2)
 
ttaccaaatttcctccaatactctctcatagcgtggaggagaaactctgtccccttcttgctttctttcaagcgttaggtgtgcctgagactcaacttgg  17902800
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AGI:  At4g38150.1   
Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G61990.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN78573.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885)
Range:  from: 17900603    to: 17902154    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At4g38160.1   
Description:  PDE191 (PIGMENT DEFECTIVE 191). similar to EMB2219 (EMBRYO DEFECTIVE 2219) [Arabidopsis thaliana] (TAIR:AT2G21710.1); similar to mitochondrial transcription termination factor family protein / mTERF family protein [Arabidopsis thaliana] (TAIR:AT4G02990.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47559.1); contains InterPro domain Mitochodrial transcription termination factor-related (InterPro:IPR003690)
Range:  from: 17902267    to: 17903558    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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