Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                             --------->LBD16                                                                           <-----------HVH21                                                                   <---------ANAC58                                                               <----------DOF2                                                            <---------ARR11(3)                                                            --------->AHL20(1)          <---------YAB1                                    --------->ARR11(3)          <---------AHL20(2)                                <---------AHL20(1)                    <--         --------->AHL20(2)                                 <-----------ARR10                  <-----         <---------AHL20(1)                                --------->RVE1(1)                  -------         --------->AHL20(1)           --------->RAP2.6(2)  --------->CCA1(1)   --------->ICU4 -------        --------->YAB1           ---------->DOF2       --------->AHL20(2) --------->ANAC46    <------ ---------->DOF2              <-----------GT1     ----------->GT1  <---------ANAC58          --------   acaaaaagaaatataatagaaacaaaactaattaacaaagtcgcaatttgtattgtataaaatatctttccgtctcccgtcatatttgaaaaaaaaaaaa  17439800        <---------MYB52(1)      ----------->GT1   <---------ARR14(2)                                        <---------ANAC46   --------->ARR14(2)                                    <---------ANAC58   --------->GLK1(2)                                     <---------ANAC58 ---------GT1                                        <----------DOF2 ----ICU4                <---------HSFC1(1)--------->AHL20(2)<---------ANAC58 -->AHL20(2)             --------->HSFB2a(2)      <-----------GT1                       <---------YAB1 -->AHL20(1)             <---------HSFB2a(2)    <-----------GT1            --------->YAB1--------->ATHB12 ---AHL20(2)             --------->HSFC1(1)<---------AHL20(2)<---------ANAC58 <-----------GT1   ----- ->AHL20(2)          <----------DOF2   --------->AHL20(2)<---------ANAC46--------->AHL20(2)<---------WOX13(1)   ttacaaatctgttaattttaaaactttctagaaaaacacaagtatataattttctcttttcgtgcgtgtttgttttaaaataacattgttttgattggcg  17439900                                                                                                   --                                                                                                   --                                                                                       --------->AHL20(2)                                                                                       <---------AHL20(2)                                                                                       <---------ICU4                                                                                       <--------ATHB1                                                                                       --------->YAB1                                                                                       <---------AHL20(1)                                                                       <---------YAB1 <---------ATHB51                                                                       <---------AHL20(2)       -----                                                                       --------->AHL20(2)      ------                                                                      --------->AHL20(1)     <-------                   --------->ANAC55(2)   --------->ATHB12             --------->AHL20(2)   <---------AHL20(2)                 --------->AHL20(2)  <---------AHL20(2)          --------->AHL20(2)   <---------ATHB12    <---------ARR11(3)              --------->AHL20(2)           <---------AHL20(2)   --------->ICU4 ->NtERF2 <-----------GT1      <---------CCA1(2)   --------->ANAC46   <---------AHL20(1)  --------->YAB1   actcaacatattttagcatttacatatttctgcatatattaaatgatttataaactcaactatagattaaaatataatttgacatctaataattttaaca  17440000    --------->AHL20(2) ------->AHL20(2)               --------->AHL20(2) ------->YAB1                   <---------AHL20(2) ---->YAB1                <---------YAB1                                         <----------DOF2 ---- --->ZAT6           --------->AHL20(2)               --------->DAG2        --------->CCA1(2)    <---- ----GT1            <---------AHL20(2)              ---------->DOF2   ---------->DOF2     <----------DOF2   ataatataaaatatgagatttataaattacgaatataaatattcaagggagagaaaaagtagaacataattcaaaagataagactttttagactttttta  17440100                                                                                               ------                                                                                               <-----                                                                                              -------          <---------WOX13(1)                                         <---------HSFB2a(2)      <------   <---------YAB1 <---------ICU4                                     <---------HSFC1(1)       <------  <---------AHL20(1)                                                 --------------->AGL15<---------AHL20(2)  --------->AHL20(1)                                <---------ARR11(3)                    <---------YAB1  <---------ARR11(3)                  ----------->GT1                --------->HSFB2a(2)--------->YAB1 -------->CBF    --------->ICU4     ---------->DOF2 --------->ARR11(3)              <---------MYB52(1) -------GT1----------->GT1 ---------->DOF2      ---------->DOF2      --------->HSFC1(1)<---------YAB1   acaatatttttgatggataaaaattattcaaaagagaagaaagtaagaagaaaagatgtttctgagaatttctagaaacagcatccgtttttataattta  17440200                    ------>MYB46(1)                    ------>MYB83                                               --------->ZAT14                   ----------->RAV1(1)                                       <---------ANAC55(2)               <------ZmHOX2a(1)            ------>ZmHOX2a(1)                --------->ANAC46         <---------TOE2(3)           <---------ARR11(3)                      --------->ANAC55(2) --->AHL20(2)  =======================HOX2a_HOX2a                            --------->ANAC55(1) ----AHL20(2) <------MYB46(1)        --------->ARR11(3)        --------->HSFC1(2)           <-------- -->AHL20(2)  <------MYB83     ====================HOX2a_HOX2a <---------HSFB2a(1)         <---------AHL20(1) ---AHL20(2) --------->MYB59   ------>ZmHOX2a(2)               <---------HSFC1(2)       --------->AHL20(2) ---AHL20(1)<--------P       --------->ARR11(3)   --------->TOE2(3)        --------->ZAT6  --------->AHL20(1)   attttcttacaaaggtaggaccaacatttgtgatctataaatcttcctactacgttatatagagacccttcgacataacacttaactcgtttatatattt  17440300                                                                             ------>NtERF2                                                                             --------->LBD16                                                                 --------->ANAC55(2)                                                                 --------->ANAC58                                                                 --------->ANAC55(1)                                                          <-----------GT1   <---------DEAR3(1)                                ---------->DOF2          <---------AHL20(2)<---------LBD16                            --------->AHL20(2)       <----------DOF2    --------->At4g35610                          --------->YAB1          <---------AHL20(2)   ----------->ARR10   <---------ANAC58 --------->ANAC46          <---------AHL20(2) --------->ANAC46   <---------ANAC58 --------->ANAC58          --------->AHL20(2)<---------LBD16             <------NtERF2 <-----------GT1    --------->ANAC58  <----------DOF2<---------DAG2 <---------GLK1(2)     <---------DEAR3(1) -AHL20(2)       <-------TEIL--------->AHL20(2)   <-----------GT1--------->ANAC58     <---------AtMYB61   gttttacttgttttgcacatacacacaaaaataaaaaagactttatatttatttactttttaatcacacggattagctccggcgaagtatggtcgtcgtc  17440400                                                            ------>ZmHOX2a(2)                                                            =============================HOX2a_HOX2a                                                           ==============================HOX2a_HOX2a                            <---------------AGL15          <------ZmHOX2a(2)                            --------------->AGL15         <---------ARR11(3)                            --------->TOE1(3)             --------->ARR11(3)                            --------->TOE2(3)   --------->ANAC58                           <-----------------AGL3         <---------ARR14(2)                           ----------------->AGL3         <-----------ARR10                           ----------------->AG --------->ANAC58                           <-----------------AG --------->ANAC46                           ----------------->AGL1   --------->HSFB2a(1)                           <--                           ----------------->AGL2   <---------HSFC1(2)                            <--                           <-----------------AGL1   <---------HSFB2a(1)                           <--                         <-----------GT1      ------>MYB46(1)                               <--------                     <---------GLK1(2)        ------>MYB83--------->ARR14(2)              <----------DOF2                     --------->ARR11(3)     --------->AtMYB61                            <---------ANAC58               --------->YAB1------>ZmHOX2a(1)--------->MYB52(1)    <---------MYB52(1)   <---------ANAC58               <---------ICU4=====================================HOX2a_HOX2a     ------>ZmHOX2a(1)<X          ------>ZmHOX2a(1)<-----------------AGL2   --------->HSFC1(2)  <---------ANAC46 <---------ANAC46   ttcatcttcttcctccatcatcagatttttccttaaatggaagaaaccaaacgaaactccgatcttctccgttctcgtgttttcctctctggcttttatt  17440500                              <---------DAG2                              <----------DOF2                             <---------ANAC58 -------ANAC58      --------->ZAT14 -------ANAC46     --------->DEAR3(1)      <---------GLK1(2) -------ANAC58   <---------At5g28300    <---------ANAC46                               <----------DOF2 -YAB1          <-----------GT1    --------->MYB52(2)       <----------DOF2     <<<<<<<<<TBF1 XXXXXXXXXXXXXXXXXXXMIR832-3P<---------ANAC58  <----------DOF2           <---------ATHB12          <-   gctgggattgggaatttctcaccgctctcttgctttttagttgctgattctttttccttcgactttctatttccaatctttcttcttctctttgtgtatt  17440600                                                                       <------NtERF2                                                                     <---------ANAC46                                                                     --------->RAP2.3(2)                                                                   <---------RRTF1(1)                                                                   <---------RAP2.6(1)                                                                   <---------ATERF1(1)                                                                   <---------DEAR4(2)                                                                   <---------ERF1                                                                   ------>NtERF2                                                                   <---------DEAR3(2)                                                                   <---------RAP2.3(1)                                                                  <---------RAP2.3(2)                                                                  <---------DEAR3(1)                                                                  --------->DEAR3(1)                                                                  <---------RAP2.3(3)                                                                  <---------RRTF1(3)                                                                  <---------RRTF1(2)                                                                 <---------ABI4(1)                                                                 <------NtERF2                                                                 --------->ATERF1(1)                                                                ------>NtERF2                                                                <---------ATERF1(1)                                                                <---------RRTF1(1)          <--------                                                                <---------RAP2.3(1)       <---------ANAC46                                                                <---------ERF1           --------->ATERF1(1)                                                               <---------RAP2.3(3)       <------NtERF2                                                               <---------RAP2.3(2)       --------->DEAR4(2)                                                               <---------RRTF1(2)        --------->RAP2.3(1)                                                               <---------O2             --------->ABI4(2)                                                               <---------bZIP60(1)      ------>NtERF2                                                               <---------RRTF1(3)       <---------ATERF1(1)                                                               <---------ATERF1(2)    --------->ERF1                                                               --------->ATERF1(2)    --------->RAP2.3(1)                                                               <---------ANAC46       --------->RRTF1(1)                                                         <---------DEAR3(1)           --------->ATERF1(1)                                                        --------->At4g35610          <---------RAP2.3(1)                                                        <---------At4g35610          <---------ATERF1(1)                                                       ------>NtERF2--------->ATERF1(1)<---------DEAR3(1)                                                      <---------RAP2.3(3)            ------>NtERF2                                                      <---------RAP2.3(2)   <---------ARR11(3)                                                      <---------RAP2.6(2) --------->ICU4<---------RAP2.3(1)                                                     --------->RAP2.6(3)---------->DOF2--------->DEAR3(1)                                                 <---------At4g35610<------NtERF2--------->ARR14(2)                                               <------NtERF2----------->HVH21<------ZmHOX2a(2)                                              --------->LBD16  <---------DEAR3(1)<---------ARR14(2)                                     --------->DAG2 --------->MYB52(1)------>NtERF2 <---------RAP2.3(2)                                    ---------->DOF2----------->HVH21--------->RRTF1(1)--------->RAP2.6(1)                                --------->AHL20(2) ----------->TGA1<---------ORA47(2)--------->LBD16                               --------->AHL20(2)--------->At4g35610--------->RAP2.3(1)--------->RAP2.3(2)   <---------YAB1       ----------->GT1      --------->DEAR3(1)<---------RAP2.6(2) <---------LBD16--- --------GLK1(2)     <-----------RAV1(1)    <---------LBD16<-----------HVH21--------->ARR11(3)    ---   agattatttttagttttatttttctgtggtaaaataaaaaaagttcgccggagatgacggctgtgacggcggcgcaaagatcagttccggcgccgttttt  17440700  Previous    Next  AGI:  At4g36988.1    Description:  CPuORF49 (Conserved peptide upstream open reading frame 49) Range:  from: 17440171    to: 17442145    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g36990.1    Description:  HSF4 (HEAT SHOCK FACTOR 4); DNA binding / transcription factor. Identical to Heat stress transcription factor B-1 (HSFB1) [Arabidopsis Thaliana] (GB:Q96320;GB:O23186); similar to AT-HSFB2B (Arabidopsis thaliana heat shock transcription factor B2B), transcription factor [Arabidopsis thaliana] (TAIR:AT4G11660.1); similar to heat shock factor 4 [Brassica rapa] (GB:ABV89640.1); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain Heat shock factor (HSF)-type, DNA-binding; (InterPro:IPR000232) Range:  from: 17440171    to: 17442145    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version