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AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                                     --------->ERF1
                                                                                     <------NtERF2
                                                                                    ------>NtERF2
                                                                                    --------->ABI4(1)
                                                                                    <---------ATERF1(1)
                                                                                   --------->ANAC58
                                                                                   --------->RAP2.3(2)
                                                                                   --------->RAP2.3(3)
                                                                                   --------->DREB2C(2)
                                                                                   --------->RAP2.6(2)
                                                                                   --------->ATERF1(2)
                                                                                   --------->ANAC46
                                                                                   --------->DEAR3(1)
                                                                                   <---------ATERF1(2)
                                                                                   --------->RRTF1(2)
                                                                                   --------->RRTF1(3)
                                                                                   --------->ANAC58
                                                                                  --------->RAP2.6(1)
                                                                                  --------->ATERF1(1)
                                                                                  --------->RRTF1(1)
                                                                                  --------->DEAR4(2)
                                                                                  --------->ORA47(2)
                                                                                  --------->RAP2.3(1)
                                                                                  --------->ERF1
                                                                                  <------NtERF2
                                                                                 --------->At4g35610
                                                                                 ------>NtERF2
                                                                                 --------->ABI4(1)
                                                                                 <---------ATERF1(1)
                                                                                 <---------DREB2C(1)
                                                                                 <---------RAP2.3(1)
                                                                                 <---------At4g35610
                                                                                 <---------DEAR4(2)
                                                                                <---------DEAR3(1)
                                                                                --------->DEAR3(1)
                                                                                <---------ATERF1(2)
                                                                                --------->RRTF1(3)
                                                                                <---------ALFIN1
                                                                                --------->RRTF1(2)
                                                                                --------->RAP2.3(3)
                                                                                --------->RAP2.6(2)
                                                                                --------->RAP2.3(2)
                                                                                --------->ATERF1(2)
                                                                                --------->ANAC46
                                                                               --------->RAP2.3(1)
                                                                               --------->ORA47(2)
                                                                          --------->AtMYB61
                                                                          <---------ALFIN1
                                                                       --------->AtMYB61
                                                                       --------->DEAR3(1)
                                                                   --------->WRKY38(1)--------->DEAR3(1)
                                                                   <-------TEIL--------->ERF1
                                                             ------>ZmHOX2a(2) --------->RRTF1(1)
                                                            <------ZmHOX2a(2)  --------->ATERF1(1)
                                                            --------->CCA1(2) --------->At4g35610
                                                           <---------ARR14(2) --------->LBD16
                                                           <---------ARR11(3) <---------At4g35610
                                                           --------->ARR11(3) ------>NtERF2
                                                           --------->AGP1 --------->DEAR3(1)
                                                         <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
                                                        --------->HSFB2a(2)  <---------ALFIN1
                                                        <---------HSFB2a(2)  --------->ANAC46
                                                      ==============HOX2a_HOX2a--------->RAP2.6(1)
                                                   ------>ZmHOX2a(1)  --------->MYB46(3)
                                         ------->GAMYB------>ZmHOX2a(1)<---------ALFIN1  --------->AtMYB61
----------->AtSPL3                      <---------MYB111(2)<---------AGP1--------->ZAT2------>NtERF2
->At4g35610                             --------->MYB46(3) --------->ARR14(2)--------->DEAR3(1)
--At4g35610                             <------------MYB.PH3(2)   --------->DOF5.7(2)--------->ATERF1(1)
--ZAT2          ----------->HVH21     <-----------GT1 =============HOX2a_HOX2a--------->ABI4(1)
--->RAV1(2)   --------->O2         --------->YAB1  =================HOX2a_HOX2a--------->DEAR4(2)
->ZAT2        <---------O2         ----------->GT1 ================HOX2a_HOX2a<---------ATERF1(1)  -
 
aagtacaatccctagcgaagtgaccagtatcaccacaattgtaacaaccttctcctcctctagatctacgttcaccacctccgccgccgccaccaatacc  17044000
                                                           <------NtERF2
                                                        --------->LBD16
                                                        ------>NtERF2
                                                        <------NtERF2
                                                       <---------ALFIN1
                                                       --------->DEAR3(1)
                                                       <---------ATERF1(1)
                                                      <------NtERF2
                                                      <---------DEAR3(1)
                                                     ------>NtERF2
                                                     <---------ATERF1(1)
                                                     <---------RAP2.3(1)
                                                    --------->ANAC46
                                                    --------->RAP2.6(2)
                                                    --------->RAP2.3(2)
                                                    --------->RAP2.3(3)
                                                    --------->ATERF1(2)
                                                    <---------ATERF1(2)
                                                    <---------ALFIN1
                                                    <---------DEAR3(1)
                                                    --------->DEAR3(1)
                                                    --------->RRTF1(2)
                                                    --------->RRTF1(3)
                                                   --------->ATERF1(1)
                                                   --------->RRTF1(1)
                                                   --------->RAP2.6(1)
                                                   --------->DEAR4(2)
                                                   --------->ORA47(2)
                                                   --------->RAP2.3(1)
                                                   --------->ERF1
                                                  <---------ATERF1(1)
                                                  --------->ABI4(1)
                                                  ------>NtERF2
                                                 --------->ANAC46
                          --------->LBD16        --------->AtMYB61
                         --------->ANAC46        ------->GAMYB
                       <---------At5g28300       --------->DEAR3(1)
                  ------>MYB83                   --------->DREB2C(2)
                <---------MYB46(2)               <---------ALFIN1
            ----------->HVH21           ------->GAMYB--------->ABI4(1)
          --------->CCA1(2)            --------->MYB46(3) ------>NtERF2               <-----------GT1
         --------->ARR11(3)           -------->P--------->MYB46(3)         --------->O2
         <---------ARR11(3)    <---------REM1(1)--------->DEAR3(2)   <---------MYB52(1)
  <----------DOF2 ------>MYB46(1)   --------->MYB46(3)--------->ATERF1(1)  --------->ANAC46
-------->GLK1(2)<---------MYB59--------->YAB1 <---------ALFIN1       --------->DOF5.7(2)  ------>ZmHOX2a(1)
 
acaatctttagagatatgacctaactcaccgcaattgtagcaaccgcttccaccgccgccgcgcctagcaccgttaccacgagagttattctccttcttg  17044100
                                                                                      --------->At5g28300
                                                                                     <---------MYB46(3)
                                                                                  ------------>AtMYB77
                                                                                  ------>NtERF2
                 --------->At5g28300                                             --------->DEAR3(1)
                ----------->GT1                                                  ----------->HVH21
              --------->At4g35610                                             --------->DEAR3(1)
            <------ZmHOX2a(1)                                            ------->GAMYB<-------GAMYB
         <-----------RAV1(2)        <---------ZAT6                       --------->RAP2.6(2)
       ----------->RAV1(1)     <----------DOF2                          --------->MYB46(3)       <--
      <---------ALFIN1      ------>NtERF2   <---------MYB52(1)     --------->ANAC58  ----------->GT1
      --------->AtMYB61    <---------RAP2.6(2)       --------->LBD16  --------->MYB52(1)      <-----
     --------->MYB46(3)   --------->RAP2.6(3) <---------DEAR3(2)   --------->ANAC58<------NtERF2----
   --------->AtMYB61    ----------->HVH21  <-----------HVH21    <---------ZAT18  --------->At1g77200
  --------->MYB46(3)    --------->WRKY12<---------At5g28300     --------->ZAT18 --------->RAP2.3(1)
 
agagaaccaccaccaggagcagtaacattgacggctttagtcttaccgtcgcttccctgagtaatagcgaactcaaccgcatcgccgacggttaaactcc  17044200
                                          <---------At4g35610
                                          --------->At4g35610
                                         --------->ANAC46
                                        <---------ZAT14
                                 --------->DAG2      <-----------RAV1(2)                        <---
    <---------LBD16          --------->ANAC58      <-----------HVH21                           <----
 <---------HSFB2a(1)         --------->ANAC58------>NtERF2                                     -----
-------MYB52(1)             <---------------------WRI1              --------->TOE1(3) --------->WRKY38(1)
----LBD16            <---------WOX13(1) --------->ZAT14 <------ZmHOX2a(1)  <----------DOF2     <----
----->LBD16       <---------YAB1---------->DOF2    <-----------TGA1 --------->TOE2(3) --------->WRKY12
 
ggtaaccttcggagacaattgaagattgatgaacgaaaagctctacgctgccatcgtcaggagtaatgaaaccatagcctttagaagcgttgaaccagtt  17044300
                  --------->ABI4(1)
                  <---------ATERF1(1)
                  ------>NtERF2
                 --------->ATERF1(2)
                 --------->RAP2.3(3)
                 --------->RAP2.3(2)
                 <---------ATERF1(2)
                 <---------DEAR3(1)
                --------->ERF1
                --------->RAP2.3(1)
                --------->DEAR4(2)
            ------>ZmHOX2a(2)
            =========================HOX2a_HOX2a
          <---------ARR14(2)
          <-----------ARR10
          --------->ARR14(2)
         <---------CCA1(2)
       <--------P--------->DEAR3(1)
      <---------MYB52(1)
     --------->LBD16   <---------WOX13(1) --------->TOE1(3)
    --------->LBD16<------NtERF2          --------->TOE2(3)
   <---------LBD16--------->LBD16        ----------->GT1
 -------->P==========================HOX2a_HOX2a
 ------>MYB46(1)--------->ATERF1(1)--------->ANAC58
 ------>MYB83  <---------ATERF1(1) --------->ANAC58
--------GT1<------ZmHOX2a(2)  ------>ZmHOX2a(1)                                                   <-
-----ZAT14<---------ARR11(3)  ----------->RAV1(2)                                                 *TSS
---->ZAT14--------->ARR11(3)  --------->At4g35610    --------->DAG2            <---------TOE1(3) <--
-----ZAT18<---------AGP1    ------>ZmHOX2a(2)       ---------->DOF2            <---------TOE2(3) ---
 
caccttcccggtagatctcgccgccgattgatcctctgaagccatcgttaaaaaaaaaagttgaagaagagattgagaaattagggttttttaagttggg  17044400
           --------->ALFIN1
         --------->ALFIN1
       <---------ANAC58       <---------TOE2(3)
       <---------ANAC46<-----------TBP            ----------->GT1
       <---------ANAC58--------->AHL20(2)    <---------AHL20(2)    --------->AHL20(2)
  ------>ZmHOX2a(1)    <---------AHL20(2)   --------->AHL20(2)     <---------AHL20(2)
 --------->TOE2(3)   <---------AHL20(2)  ----------->GT1      <------ZmHOX2a(1)
--------ARR14(2)     --------->AHL20(2) <XXXXXXXXXXXXXXXXXXXXMIR1886.3         --------->TOE1(3)
-------GLK1(1)       <-----------TBP  --------->ALFIN1       ----------->GT1   --------->TOE2(3)
------>GLK1(1)     <-----------TBP  <---------ANAC46   --------->ICU4  --------->YAB1            ---
 
aaatccttaggcgtgtgtgtgtatatatatatagaggtagagtgggattaaatctgtaattaagaggaaattaatgagaaaaccctaattttagtgggga  17044500
                                                 <----------TaMYB80
                                                 <---------KAN4(1)
                                                 <---------HSFB2a(1)
                                                 --------->HSFB2a(1)                        <-------
        --------->TOE1(3)       <---------AHL20(2)    <----------DOF2                       ========
        --------->TOE2(3) <------NtERF2          --------->KAN4(1)                       <----------
     <-----------GT1     ------>NtERF2   <---------AtMYB61     ----------->GT1<---------HSFC1(2)
   --------->AHL20(2)   --------->DEAR3(1)      <---------KAN4(2)             --------->HSFC1(2)
   <---------AHL20(2)   --------->RAP2.6(2)     ---------->TaMYB80         <------ZmHOX2a(1)--------
-------->GT1    >>>>>>>>>>WRKY63--------->AHL20(2)--------->KAN4(2)      <---------TOE2(3)  <-------
 
atgtaattaaaccctaatttgactatgccgcctaattaaaaattttggtggaatattctttgggactggagaaatttaggaaacttgctatttcactttt  17044600
                                   --------->ANAC58
                                   --------->ANAC46
                                <---------WRKY12
                            <-------MYC3
              xxxxxxxxxxxxxxxx>smallRNA(s)
            <---------MYB52(1)<-----------HVH21
          xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
         <-------TEIL       <-------MYC2                      <---------MYB52(1)
       <-------PIF5         ------->MYC3                    --------->ANAC58
      --------->ANAC58      ------->MYC2                    --------->ANAC58
      --------->ANAC46     --------->ANAC58                <---------TOE1(2)
      --------->bZIP60(2)  --------->ANAC58                <---------TOE2(2)
      <---------TGA1a      --------->ANAC46              <---------SPL7
      --------->TGA1a   --------->ZAT14                <---------------AtSPL3                      -
 <-----------GT1   <---------ZAT2  --------->ANAC58    --------------->AtSPL3                      <
--DAG2--------->O2 <---------At4g35610         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                -
================bZIP_DOF<---------ZAT14      <---------AHL20(2)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)
-GT1  --------->ANAC58  <---------ZAT18      --------->AHL20(2)  --------->ICU4            <--------
------------->WRI1 --------->ZAT2<---------ALFIN1 --------->YAB1 <---------YAB1            <--------
---DOF2------->PIF5--------->At4g35610      --------->YAB1 --------->SPL7     --------->At5g28300  <
 
tttttatccacgtccgtttatcagctgtgcacgcgtccacgcttgaattttaatcgtggtcgtacgttatgattttcttacagtgaatcgcgataagatt  17044700
               <-----------GT1
 ------>ZmHOX2a(2)
<------ZmHOX2a(2)
-------->ARR11(3)                            <---------RVE1(1)
---------ARR14(2)                           --------->ARR11(3)                                 -----
-------->ARR14(2)                           <---------GLK1(2)                       <----------DOF2
-TOE2(3)       <<<<<<<<<<<<<<<<<LFY         <---------ARR11(3)      xxxxxxxxxxxxxxxx>smallRNA(i)   <
-YAB1       <---------ICU4     <---------ANAC58                   --------->At4g35610          <----
---------ARR11(3)              <---------ANAC58  <-----------GT1  <---------At4g35610          <----
 
gggatcttagtccaatttttacattgggccaattgtttgtggtccaagatttttactctgatgggcttaagctggacttggtatggccttttttatattt  17044800
             <------MYB83
          <---------At4g35610
        <---------RAP2.6(2)
      --------->ARR14(2)
     <---------ARR14(2)
     --------->ARR14(2)
     <---------GLK1(2)
   --------->LBD16
 ----------------->AGL1                   <---------AHL20(1)
 <-----------------AGL1                   --------->AHL20(2)                               <--------
 <---------LBD16                          <---------AHL20(2)                            <---------YAB1
 <-----------------AG                    <---------AHL20(2)                         <---------ANAC58
---->AHL20(2)<---------MYB46(3)          --------->AHL20(2)                         <---------ANAC58
-----------GT1            <---------ATHB12--------->AHL20(1)                        <---------ANAC46
-----AHL20(1)<------MYB46(1)      --------->WOX13(1)        <-----------RAV1(2)<----------DOF2
-----AHL20(2)----------->GT1   <---------ARR11(3)  <----------DOF2           <---------At4g35610
 
tatttcccgattcggctggttactactaaatcaatatccatcaaataaattgtacttttagcttcaggctatggtattgcagcttttgcttatgcttttc  17044900
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AGI:  At4g36020.1   
Description:  CSDP1 (COLD SHOCK DOMAIN PROTEIN 1); RNA binding / double-stranded DNA binding / nucleic acid binding / single-stranded DNA binding. similar to cold-shock DNA-binding family protein [Arabidopsis thaliana] (TAIR:AT2G17870.1); similar to universal minicircle sequence binding protein (UMSBP) [Leishmania infantum] (GB:XP_001469754.1); contains InterPro domain Cold shock protein; (InterPro:IPR011129); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain Cold-shock protein, DNA-binding; (InterPro:IPR002059); contains InterPro domain Zinc finger, CCHC retroviral-type; (InterPro:IPR013084); contains InterPro
Range:  from: 17043115    to: 17044399    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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