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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
ERF1
<------
NtERF2
------>
NtERF2
--------->
ABI4(1)
<---------
ATERF1(1)
--------->
ANAC58
--------->
RAP2.3(2)
--------->
RAP2.3(3)
--------->
DREB2C(2)
--------->
RAP2.6(2)
--------->
ATERF1(2)
--------->
ANAC46
--------->
DEAR3(1)
<---------
ATERF1(2)
--------->
RRTF1(2)
--------->
RRTF1(3)
--------->
ANAC58
--------->
RAP2.6(1)
--------->
ATERF1(1)
--------->
RRTF1(1)
--------->
DEAR4(2)
--------->
ORA47(2)
--------->
RAP2.3(1)
--------->
ERF1
<------
NtERF2
--------->
At4g35610
------>
NtERF2
--------->
ABI4(1)
<---------
ATERF1(1)
<---------
DREB2C(1)
<---------
RAP2.3(1)
<---------
At4g35610
<---------
DEAR4(2)
<---------
DEAR3(1)
--------->
DEAR3(1)
<---------
ATERF1(2)
--------->
RRTF1(3)
<---------
ALFIN1
--------->
RRTF1(2)
--------->
RAP2.3(3)
--------->
RAP2.6(2)
--------->
RAP2.3(2)
--------->
ATERF1(2)
--------->
ANAC46
--------->
RAP2.3(1)
--------->
ORA47(2)
--------->
AtMYB61
<---------
ALFIN1
--------->
AtMYB61
--------->
DEAR3(1)
--------->
WRKY38(1)
--------->
DEAR3(1)
<-------
TEIL
--------->
ERF1
------>
ZmHOX2a(2)
--------->
RRTF1(1)
<------
ZmHOX2a(2)
--------->
ATERF1(1)
--------->
CCA1(2)
--------->
At4g35610
<---------
ARR14(2)
--------->
LBD16
<---------
ARR11(3)
<---------
At4g35610
--------->
ARR11(3)
------>
NtERF2
--------->
AGP1
--------->
DEAR3(1)
<xxxxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
--------->
HSFB2a(2)
<---------
ALFIN1
<---------
HSFB2a(2)
--------->
ANAC46
==============
HOX2a_HOX2a
--------->
RAP2.6(1)
------>
ZmHOX2a(1)
--------->
MYB46(3)
------->
GAMYB
------>
ZmHOX2a(1)
<---------
ALFIN1
--------->
AtMYB61
----------->
AtSPL3
<---------
MYB111(2)
<---------
AGP1
--------->
ZAT2
------>
NtERF2
->
At4g35610
--------->
MYB46(3)
--------->
ARR14(2)
--------->
DEAR3(1)
--
At4g35610
<------------
MYB.PH3(2)
--------->
DOF5.7(2)
--------->
ATERF1(1)
--
ZAT2
----------->
HVH21
<-----------
GT1
=============
HOX2a_HOX2a
--------->
ABI4(1)
--->
RAV1(2)
--------->
O2
--------->
YAB1
=================
HOX2a_HOX2a
--------->
DEAR4(2)
->
ZAT2
<---------
O2
----------->
GT1
================
HOX2a_HOX2a
<---------
ATERF1(1)
-
aagtacaatccctagcgaagtgaccagtatcaccacaattgtaacaaccttctcctcctctagatctacgttcaccacctccgccgccgccaccaatacc
17044000
<------
NtERF2
--------->
LBD16
------>
NtERF2
<------
NtERF2
<---------
ALFIN1
--------->
DEAR3(1)
<---------
ATERF1(1)
<------
NtERF2
<---------
DEAR3(1)
------>
NtERF2
<---------
ATERF1(1)
<---------
RAP2.3(1)
--------->
ANAC46
--------->
RAP2.6(2)
--------->
RAP2.3(2)
--------->
RAP2.3(3)
--------->
ATERF1(2)
<---------
ATERF1(2)
<---------
ALFIN1
<---------
DEAR3(1)
--------->
DEAR3(1)
--------->
RRTF1(2)
--------->
RRTF1(3)
--------->
ATERF1(1)
--------->
RRTF1(1)
--------->
RAP2.6(1)
--------->
DEAR4(2)
--------->
ORA47(2)
--------->
RAP2.3(1)
--------->
ERF1
<---------
ATERF1(1)
--------->
ABI4(1)
------>
NtERF2
--------->
ANAC46
--------->
LBD16
--------->
AtMYB61
--------->
ANAC46
------->
GAMYB
<---------
At5g28300
--------->
DEAR3(1)
------>
MYB83
--------->
DREB2C(2)
<---------
MYB46(2)
<---------
ALFIN1
----------->
HVH21
------->
GAMYB
--------->
ABI4(1)
--------->
CCA1(2)
--------->
MYB46(3)
------>
NtERF2
<-----------
GT1
--------->
ARR11(3)
-------->
P
--------->
MYB46(3)
--------->
O2
<---------
ARR11(3)
<---------
REM1(1)
--------->
DEAR3(2)
<---------
MYB52(1)
<----------
DOF2
------>
MYB46(1)
--------->
MYB46(3)
--------->
ATERF1(1)
--------->
ANAC46
-------->
GLK1(2)
<---------
MYB59
--------->
YAB1
<---------
ALFIN1
--------->
DOF5.7(2)
------>
ZmHOX2a(1)
acaatctttagagatatgacctaactcaccgcaattgtagcaaccgcttccaccgccgccgcgcctagcaccgttaccacgagagttattctccttcttg
17044100
--------->
At5g28300
<---------
MYB46(3)
------------>
AtMYB77
------>
NtERF2
--------->
At5g28300
--------->
DEAR3(1)
----------->
GT1
----------->
HVH21
--------->
At4g35610
--------->
DEAR3(1)
<------
ZmHOX2a(1)
------->
GAMYB
<-------
GAMYB
<-----------
RAV1(2)
<---------
ZAT6
--------->
RAP2.6(2)
----------->
RAV1(1)
<----------
DOF2
--------->
MYB46(3)
<--
<---------
ALFIN1
------>
NtERF2
<---------
MYB52(1)
--------->
ANAC58
----------->
GT1
--------->
AtMYB61
<---------
RAP2.6(2)
--------->
LBD16
--------->
MYB52(1)
<-----
--------->
MYB46(3)
--------->
RAP2.6(3)
<---------
DEAR3(2)
--------->
ANAC58
<------
NtERF2
----
--------->
AtMYB61
----------->
HVH21
<-----------
HVH21
<---------
ZAT18
--------->
At1g77200
--------->
MYB46(3)
--------->
WRKY12
<---------
At5g28300
--------->
ZAT18
--------->
RAP2.3(1)
agagaaccaccaccaggagcagtaacattgacggctttagtcttaccgtcgcttccctgagtaatagcgaactcaaccgcatcgccgacggttaaactcc
17044200
<---------
At4g35610
--------->
At4g35610
--------->
ANAC46
<---------
ZAT14
--------->
DAG2
<-----------
RAV1(2)
<---
<---------
LBD16
--------->
ANAC58
<-----------
HVH21
<----
<---------
HSFB2a(1)
--------->
ANAC58
------>
NtERF2
-----
-------
MYB52(1)
<---------------------
WRI1
--------->
TOE1(3)
--------->
WRKY38(1)
----
LBD16
<---------
WOX13(1)
--------->
ZAT14
<------
ZmHOX2a(1)
<----------
DOF2
<----
----->
LBD16
<---------
YAB1
---------->
DOF2
<-----------
TGA1
--------->
TOE2(3)
--------->
WRKY12
ggtaaccttcggagacaattgaagattgatgaacgaaaagctctacgctgccatcgtcaggagtaatgaaaccatagcctttagaagcgttgaaccagtt
17044300
--------->
ABI4(1)
<---------
ATERF1(1)
------>
NtERF2
--------->
ATERF1(2)
--------->
RAP2.3(3)
--------->
RAP2.3(2)
<---------
ATERF1(2)
<---------
DEAR3(1)
--------->
ERF1
--------->
RAP2.3(1)
--------->
DEAR4(2)
------>
ZmHOX2a(2)
=========================
HOX2a_HOX2a
<---------
ARR14(2)
<-----------
ARR10
--------->
ARR14(2)
<---------
CCA1(2)
<--------
P
--------->
DEAR3(1)
<---------
MYB52(1)
--------->
LBD16
<---------
WOX13(1)
--------->
TOE1(3)
--------->
LBD16
<------
NtERF2
--------->
TOE2(3)
<---------
LBD16
--------->
LBD16
----------->
GT1
-------->
P
==========================
HOX2a_HOX2a
------>
MYB46(1)
--------->
ATERF1(1)
--------->
ANAC58
------>
MYB83
<---------
ATERF1(1)
--------->
ANAC58
--------
GT1
<------
ZmHOX2a(2)
------>
ZmHOX2a(1)
<-
-----
ZAT14
<---------
ARR11(3)
----------->
RAV1(2)
*
TSS
---->
ZAT14
--------->
ARR11(3)
--------->
At4g35610
--------->
DAG2
<---------
TOE1(3)
<--
-----
ZAT18
<---------
AGP1
------>
ZmHOX2a(2)
---------->
DOF2
<---------
TOE2(3)
---
caccttcccggtagatctcgccgccgattgatcctctgaagccat
cgttaaaaaaaaaagttgaagaagagattgagaaattagggttttttaagttgg
g
17044400
--------->
ALFIN1
--------->
ALFIN1
<---------
ANAC58
<---------
TOE2(3)
<---------
ANAC46
<-----------
TBP
----------->
GT1
<---------
ANAC58
--------->
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
------>
ZmHOX2a(1)
<---------
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
--------->
TOE2(3)
<---------
AHL20(2)
----------->
GT1
<------
ZmHOX2a(1)
--------
ARR14(2)
--------->
AHL20(2)
<XXXXXXXXXXXXXXXXXXXX
MIR1886.3
--------->
TOE1(3)
-------
GLK1(1)
<-----------
TBP
--------->
ALFIN1
----------->
GT1
--------->
TOE2(3)
------>
GLK1(1)
<-----------
TBP
<---------
ANAC46
--------->
ICU4
--------->
YAB1
---
aaatccttaggcgtgtgtgtgtatatatatatagaggtagagtgggattaaatctgtaattaagaggaaattaatgagaaaaccctaattttagtgggga
17044500
<----------
TaMYB80
<---------
KAN4(1)
<---------
HSFB2a(1)
--------->
HSFB2a(1)
<-------
--------->
TOE1(3)
<---------
AHL20(2)
<----------
DOF2
========
--------->
TOE2(3)
<------
NtERF2
--------->
KAN4(1)
<----------
<-----------
GT1
------>
NtERF2
<---------
AtMYB61
----------->
GT1
<---------
HSFC1(2)
--------->
AHL20(2)
--------->
DEAR3(1)
<---------
KAN4(2)
--------->
HSFC1(2)
<---------
AHL20(2)
--------->
RAP2.6(2)
---------->
TaMYB80
<------
ZmHOX2a(1)
--------
-------->
GT1
>>>>>>>>>>
WRKY63
--------->
AHL20(2)
--------->
KAN4(2)
<---------
TOE2(3)
<-------
atgtaattaaaccctaatttgactatgccgcctaattaaaaattttggtggaatattctttgggactggagaaatttaggaaacttgctatttcactttt
17044600
--------->
ANAC58
--------->
ANAC46
<---------
WRKY12
<-------
MYC3
xxxxxxxxxxxxxxxx>
smallRNA(s)
<---------
MYB52(1)
<-----------
HVH21
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
<-------
TEIL
<-------
MYC2
<---------
MYB52(1)
<-------
PIF5
------->
MYC3
--------->
ANAC58
--------->
ANAC58
------->
MYC2
--------->
ANAC58
--------->
ANAC46
--------->
ANAC58
<---------
TOE1(2)
--------->
bZIP60(2)
--------->
ANAC58
<---------
TOE2(2)
<---------
TGA1a
--------->
ANAC46
<---------
SPL7
--------->
TGA1a
--------->
ZAT14
<---------------
AtSPL3
-
<-----------
GT1
<---------
ZAT2
--------->
ANAC58
--------------->
AtSPL3
<
--
DAG2
--------->
O2
<---------
At4g35610
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
-
================
bZIP_DOF
<---------
ZAT14
<---------
AHL20(2)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
-
GT1
--------->
ANAC58
<---------
ZAT18
--------->
AHL20(2)
--------->
ICU4
<--------
------------->
WRI1
--------->
ZAT2
<---------
ALFIN1
--------->
YAB1
<---------
YAB1
<--------
---
DOF2
------->
PIF5
--------->
At4g35610
--------->
YAB1
--------->
SPL7
--------->
At5g28300
<
tttttatccacgtccgtttatcagctgtgcacgcgtccacgcttgaattttaatcgtggtcgtacgttatgattttcttacagtgaatcgcgataagatt
17044700
<-----------
GT1
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
-------->
ARR11(3)
<---------
RVE1(1)
---------
ARR14(2)
--------->
ARR11(3)
-----
-------->
ARR14(2)
<---------
GLK1(2)
<----------
DOF2
-
TOE2(3)
<<<<<<<<<<<<<<<<<
LFY
<---------
ARR11(3)
xxxxxxxxxxxxxxxx>
smallRNA(i)
<
-
YAB1
<---------
ICU4
<---------
ANAC58
--------->
At4g35610
<----
---------
ARR11(3)
<---------
ANAC58
<-----------
GT1
<---------
At4g35610
<----
gggatcttagtccaatttttacattgggccaattgtttgtggtccaagatttttactctgatgggcttaagctggacttggtatggccttttttatattt
17044800
<------
MYB83
<---------
At4g35610
<---------
RAP2.6(2)
--------->
ARR14(2)
<---------
ARR14(2)
--------->
ARR14(2)
<---------
GLK1(2)
--------->
LBD16
----------------->
AGL1
<---------
AHL20(1)
<-----------------
AGL1
--------->
AHL20(2)
<--------
<---------
LBD16
<---------
AHL20(2)
<---------
YAB1
<-----------------
AG
<---------
AHL20(2)
<---------
ANAC58
---->
AHL20(2)
<---------
MYB46(3)
--------->
AHL20(2)
<---------
ANAC58
-----------
GT1
<---------
ATHB12
--------->
AHL20(1)
<---------
ANAC46
-----
AHL20(1)
<------
MYB46(1)
--------->
WOX13(1)
<-----------
RAV1(2)
<----------
DOF2
-----
AHL20(2)
----------->
GT1
<---------
ARR11(3)
<----------
DOF2
<---------
At4g35610
tatttcccgattcggctggttactactaaatcaatatccatcaaataaattgtacttttagcttcaggctatggtattgcagcttttgcttatgcttttc
17044900
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AGI:
At4g36020.1
Description:
CSDP1 (COLD SHOCK DOMAIN PROTEIN 1); RNA binding / double-stranded DNA binding / nucleic acid binding / single-stranded DNA binding. similar to cold-shock DNA-binding family protein [Arabidopsis thaliana] (TAIR:AT2G17870.1); similar to universal minicircle sequence binding protein (UMSBP) [Leishmania infantum] (GB:XP_001469754.1); contains InterPro domain Cold shock protein; (InterPro:IPR011129); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain Cold-shock protein, DNA-binding; (InterPro:IPR002059); contains InterPro domain Zinc finger, CCHC retroviral-type; (InterPro:IPR013084); contains InterPro
Range:
from: 17043115
to: 17044399
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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