Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                         <---------DEAR3(1)                                                                      <---------LBD16                                                                  ------>ZmHOX2a(2)                                                                 <------ZmHOX2a(2)                                                                 --------->GLK1(1)                                                                 <---------GLK1(1)                                                                <-----------ARR10                                                                <---------AGP1                      -                                                                <---------ARR14(2)                  -                                                                --------->ARR14(2)                 --                                                                <---------ARR11(3)                 --                <---------DAG2                                  --------->ARR11(3)               <---             ------>NtERF2                                     <---------CCA1(2)                 ----            <---------ALFIN1            --------->SPL7       --------->TOE2(1)                   <---           --------->ATERF1(1)        <---------SPL7         --------->TOE1(1)                  <----           --------->MYB46(3)        --------->RAP2.6(2)    --------->LBD16                     <----          ------>NtERF2    <---------ICU4                   =============HOX2a_HOX2a           ------          <---------At4g35610        <---------ANAC58       <---------LBD16                    <-----    <---------ANAC58     --------->GLK1(2)        <---------------AtSPL3                --------->LBD16    <---------ANAC58--------->ANAC46 <---------ANAC58       ------>ZmHOX2a(1)  <---------DAG2  <----- <----------DOF2<----------DOF2   --------->ANAC58--------------->AtSPL8       <----------DOF2<------ ---------DAG2 <---------DAG2 <------ZmHOX2a(1)   --------------->AtSPL3------>NtERF2 <---------LBD16 --------GT1--------->RAP2.6(2)   --------->ANAC58<---------------AtSPL8--------->LBD16<---------LBD16   cacctttcttgcagccacctttacgaaaatcaggacaagccgtaccagagtaatggtacttcctcggatctctccggcgagctttttctccgggatgagc  14393000          <-----------HVH21    <---------ALFIN1 -------->ANAC58 -------->ANAC58 ------->SPL1(2)           ------>NtERF2 ------->SPL7             ------>NtERF2                            <---------ARR14(2)              <- ------ZAT14              --------->LBD16                          --------->ARR14(2)              -- ----->ZAT18              --------->ANAC46                       --------->LBD16                   -- ------SPL7     --------->ICU4                                  <---------ANAC55(2)           <------MYB83 -----ANAC58    <---------ATHB12                                --------->ANAC58              <------MYB46(1) -----ANAC58  --------->WOX13(1)     <---------ALFIN1           --------->ANAC46              ------- --------->AtSPL3       <---------LBD16   ----------->RAV1(2)   --------->ANAC58             <------- ----------AtSPL8<---------ICU4 <-------PIF5    <----------DOF2 --------->ANAC55(1) --------->ANAC58 ----------AtSPL3--------->YAB1 ------->PIF5------>ZmHOX2a(1)  <---------LBD16      --------->ANAC58 ------------SPL14 <---------YAB1   --------->ZAT18     ----------->GT1 <-----------HVH21 --------->ATHB12   gtacggacactccgtccaatcatgactccggccacgagcacacctcctgactttgaaatcgtacatacggaaatggtcgcatgagtaagcatcgattggt  14393100               --------->CCA1(2)               <------ZmHOX2a(2)               --------->ARR14(1)                --------->At5g28300              --------->ARR14(2)                ----------->GT1              --------->ARR11(3)          <---------MYB52(1)              --------->ARR11(1)         <-------GAMYB              --------->AGP1            <---------MYB46(3)            >>>>>>>>>E2Fd              <---------ARR14(2)        --------->MYB52(2)           ------>NtERF2      --------->ANAC58                 <-------TEIL                  --------->LBD16      --------->ANAC58                <---------MYB52(1)            --------->ANAC58     --------->SPL7                  <---------MYB52(1)             --------->ANAC58   --------->LBD16              <---------ARR14(2)                  --------->ANAC46 <---------LBD16<---------LBD16 --------->ARR14(2)     --------->MYB52(1)            --------->ANAC58 --------ARR14(2) --------->LBD16 ------>ZmHOX2a(2)    <-----------GT1>>>>>>>>>E2Fc  --------->ANAC58 ------->ARR14(2)<---------ANAC46 <---------LBD16<------NtERF2     <---------LBD16 --------->YAB1 ------->GLK1(2)------>ZmHOX2a(2)<------ZmHOX2a(2)   <---------MYB52(2) ---------->DOF2     --------- ---->GT1     <---------AGP1<---------LBD16    --------->ANAC46 -------->P       --------->ANAC58 --MYB46(3) ----------->ARR10 --------->LBD16 --------->RAP2.6(3) ------->GAMYB  --------->ANAC58   gaatccggacccaatagatccgggtatgactccggatccggttcgttagacggcaaataacgctgcaaccccgccaaagcttcaagcatgctacaatctg  14393200                                                  --------->ANAC46                                                 --------->ATERF1(2)                                     --------->ARR11(3)                                     <---------ARR11(3)                                            <-           --------->LBD16          <---------At4g35610                             ------>ZmHOX2a(1)    --------->YAB1        ------>NtERF2          --------->MYB46(3)                 =================    <---------ICU4       ----------->HVH21      --------->DEAR3(2)                 --------->TOE1(2)- >GLK1(2)<---------LBD16 --------->DEAR3(1)    --------->MYB52(1)  <<<<<<<<<<<<<<<<<LFY            <-   gactattcatcaccggagaaaaaaactccgacgttgtaagctcttcaagtaccggccatggaggtatttcaacagtgggataagtcctgcgagtttctcc  14393300             --------->YAB1          --------->TOE2(3)          <----------DOF2      <---------AHL20(2)                                                ---- --------ATHB12                ---------->DOF2            <----------DOF2                     ------- =====HOX2a_HOX2a              --------->AHL20(2)      <---------ARR11(3)      *TSS          -------- -------->YAB1       --------->LBD16                   --------->ARR11(3)    <---------ANAC46-------- -----ZmHOX2a(2)   <---------LBD16             --------->ANAC46         <-----------RAV1(1) <--------   gatcatcatcttctttaatactccggtgaacaataaatcacattagtcgacgaaagagttctttttttttgtttgtgttgtttgtttgtaatacaccggc  14393400                                   <------MYB83                                   ----------->GT1                                   <------MYB46(1)                                  --------->MYB59           <---------TOE2(3)                                  <---------AtMYB61        ---------->DOF2                                <---------ANAC46       ----------->GT1                              <---------MYB46(3)      <---------TOE2(3)                           ------->GAMYB         <-----------GT1--------->CCA1(2)                         <---------At5g28300    --------->AHL20(2)                                <-- ------>DOF2            --------->MYB52(1)      <---------AHL20(2)         <------ZmHOX2a(1)   <----- -->LBD16            --------->ANAC55(1)    <---------AHL20(2) --------->AHL20(1)              ------ ->DEAR3(1)          --------->ANAC55(2)    --------->AHL20(2) <---------ARR11(3)           --------- ->DREB2C(2)         --------->ANAC46      <---------AHL20(2)  --------->ARR11(3)     ----------->GT1 -LBD16              <---------ANAC55(2)<---------YAB1<---------YAB1 <---------YAB1   --------->YAB1   aaagctacttatgtagttgaaacacttaaccgtggtttggttaaaattatttaactatggttaaagatattagcataggactaggttatcgtaacaaagc  14393500                                                               <---------ANAC46                                                               <---------ANAC58                                                      --------->WRKY38(1)                                                   <---------ANAC58                   <---------At4g35610             <---------ANAC58            ----------->HVH21                      <---------ANAC46      --------->ANAC58--------->At4g35610         ------->TEIL <---------ANAC58      --------->ANAC58--------->ZAT2              <-------TEIL --------->ANAC55(2)    --------->CCA1(2)<---------MYB46(3)           --------->SPL7    <---------ANAC46 ---------HVH21    --------->At4g35610          <---------SPL7 <---------ANAC55(2)  <---------ICU4 ----ZAT2  <-------MYC3                       --------------->AtSPL3<---------bZIP60(2)       <------ --->ZAT2  ------->MYC3                    --------->CCA1(2)<---------MYB52(1)   --------->YAB1 ->DOF2   ----------->GT1             --------->ANAC46--------->WRKY12--------->ALFIN1    <----------DOF2   tgtgagataagcatgtgaaacagcggctggagacttatccacgagatagacgtacgtggaccgtttcgtgatgtggacgtttatcaaaatgactttgacg  14393600                                                            <---------DEAR3(2)             ------>MYB83                        <-------TEIL<-------GAMYB             ------>MYB46(1)                    --------->ARR14(1)             --------->MYB52(1)                --------->ARR14(2)           <---------MYB59               --------->ATHB12   <------MYB46(1)           <----------ID1        --------->MYB52(1)       <----------DOF2--------->CCA1(2)                ---------->DOF2        <-----------GT1    ----------->GT1     <---------ARR14(2)               --------->LBD16    <---------TOE2(3)     --------->DAG2<---------YAB1      <------MYB83 <---------GLK1(2)   ---------->DOF2     <---------SPL7 <------ZmHOX2a(1)    <---------DREB2C(2) --------->ANAC46 ---TOE2(3)------->GAMYB  <---------TOE1(3)    --------->ARR11(1)      ----------->ARR10       ------   aagtttaaagtaaccgaactgtgagcgtaaggttactttaggattattagatacgttgaagtcggtcgaagtttagattctccgaaagacgacaaaatag  14393700                                                                          <---------ANAC46                                                                          <---------ANAC58                                                                          <---------ANAC58                                                                          <---------AtLEC2                                                                 -------->HAHB4                                                                <---------ATHB51                                                                <---------YAB1                                                <---------AHL20(2)   <---------MYB46(3)                                              <---------ANAC55(2)<---------ICU4                    <---------AHL20(2)        --------->ANAC55(2)<---------AHL20(2)                    --------->AHL20(2)      <-----------GT1     --------->ICU4<---------CCA1(2)                  --------->TOE2(3)    <---------DAG2        <---------AHL20(2) ----->GT1      <-------TEIL           --------->TOE2(3)     --------->AHL20(2)------->TEIL     <----   ataatccacagttttagtttcattaattagtctatccattgccttattacttaatttgtttgtttaattattcgttgcatgtatctcttattttttatat  14393800             --------->AHL20(1)             <---------AHL20(1)             <---------AHL20(2)             --------->AHL20(2)          <---------AHL20(2)          <--------ATHB1          --------->AHL20(2)          <---------ICU4         <---------YAB1         --------->ICU4       --------->YAB1      <---------AHL20(2)            --------->ATHB12      <---------YAB1               <---------YAB1  <---------AHL20(2)     --------->AHL20(1)         --------->ICU4    --------->AHL20(2)                               --     <---------AHL20(1) --------->ATHB51         <---------YAB1                                   ---     --------->AHL20(2)<---------YAB1         <---------AHL20(2)                            --------- -----YAB1--------->ATHB51   <---------YAB1   <---------YAB1     <---------TOE2(3)          ---------   gattcaatataataatttattgtttattattgtcattttgatttgaatattattatatatatcgaatgaggttattgtatcatttatctagcaataaaaa  14393900  Previous    Next  AGI:  At4g29190.1    Description:  zinc finger (CCCH-type) family protein. similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT2G19810.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN81808.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) Range:  from: 14391944    to: 14393379    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version