AthaMap TU-Logo
Search
 
   Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
Go to graphical and table display 

1        10        20        30        40        50        60        70        80        90        100 
                                       --------->At4g35610                                       ---
               <---------REM1(1)       <---------At4g35610                              --------->YAB1
        --------->MYB46(3)         --------->TOE2(3)                          --------->ALFIN1  ----
     --------->GLK1(1)          --------->ARR14(2)                          <---------ZAT6    ------
--------->At4g35610             <---------ARR14(2)--------->ANAC58          <---------ANAC46  <-----
<---------At4g35610         ------>ZmHOX2a(2)     --------->ANAC58  ---------->DOF2    <---------YAB1
 
ttgagcagacatccaacgttgtagccagtgatccataacctcatcggccaaacaggcctctcgtttttggacaaagctagtgtggatgttatcacagtga  13412600
                                                                    <---------AGP1
                                                                    <---------ARR11(3)
                                                                    --------->ARR14(2)
                                                                    <---------ARR14(2)
                                                                 ------>ZmHOX2a(2)
                                                                <------ZmHOX2a(2)
                                                               --------->ARR14(2)
                                                               <---------ARR14(2)
                                                               <---------ARR11(3)
                                                          <------NtERF2
                                                         ------>NtERF2            --------->HSFB2a(2)
                                                      <------MYB46(1)        <---------ANAC58
                                                      <------MYB83  --------->ARR11(3)
                                                     --------->ALFIN1<------ZmHOX2a(2)
                                                     <---------MYB46(3)      <---------ANAC58
        --------->DAG2                               <---------AtMYB61------>ZmHOX2a(2)
       ---------->DOF2           --------->ANAC58 ==========================HOX2a_HOX2a
  ---------->DOF2                --------->ANAC46 ======================HOX2a_HOX2a
--->ZmHOX2a(2)                   --------->ANAC58 ===========================HOX2a_HOX2a
----->At4g35610              ------>MYB83         =====================HOX2a_HOX2a<---------HSFB2a(2)
--->ZAT14        --------->At4g35610              <------ZmHOX2a(1)<---------ARR14(1)     ----------
----ZAT14    <----------CDC5 ------>MYB46(1)      --------->ATHB12 <---------CCA1(2)    <---------YAB1
 
tctgtaaaagtaaagcgatgagctctgataccatccaagcgatagaattgaaaggattggtgccaagatcggatcttgaggcgttctggtaatgaaagac  13412700
                                                                                     --------->ALFIN1
                                                                                   <---------ANAC46
                                                                                   <---------ANAC55(1)
                                                                                   <---------ANAC58
                                                                                   <---------ANAC58
                                                                                  <------NtERF2
                                                                                 ------>NtERF2
                                                                                <---------ARR14(2)
               <---------ALFIN1                                                 --------->ARR14(2)
              --------->MYB46(3)          --------->ANAC58                    --------->LBD16
             ------->TEIL                 --------->ANAC58                   --------->ANAC46
    --------->ANAC58         <---------GLK1(1)                              <---------LBD16
    --------->ANAC58        <---------ARR14(2)                         --------->At4g35610      <---
>DOF2       <-----------GT1 --------->ARR14(2)                         <---------At4g35610 <--------
 
tcttctcaagaaaatgaaccaccttgctctagataccctcatggcaagtctcatgaagaaggaagaagatggagagctctccggagccgtgtgagtgtta  13412800
        --------->LBD16                                           --------->At4g35610     <---------CCA1(2)
       <---------ANAC58                                           <---------At4g35610   --------->YAB1
       <---------ANAC58                                      <---------WOX13(1)        -------------
       <---------ANAC55(1)                                 <---------ICU4              <------------
       <---------AtLEC2                                    --------->ATHB12           <-------------
   <---------ZAT2                                         --------->ICU4         <---------------AtSPL8
   --------->ZAT2                                         <---------YAB1        <---------ANAC46
------YAB1                                              <---------At4g35610   --------->MYB52(1)
-ZAT6  <---------ANAC46         <------ZmHOX2a(1)     <---------ANAC46    <------ZmHOX2a(1)
 
tcatccagttgcgtggaagcgaaggaagaagatgaggagacagtgatggagttaatggctgatgattgcaactgagaggaataacgggtactcatatcgg  13412900
                      ----------->RAV1(2)
                      <---------LBD16
                    ------>ZmHOX2a(2)
                   <---------GLK1(1)                                      ---------->DOF2
                  --------->ARR11(3)                                   --------->AtLEC2          <--
      --------->ARR11(3)                                          --------->ANAC58               <--
      <---------ARR11(3)------>ZmHOX2a(1)                       ---------->DOF2                 ----
-->AGL15          <---------ARR11(3)                       <---------At4g35610                 -----
---AGL15    --------->ATHB12       ---------->DOF2         --------->At4g35610  <----------DOF2-----
----AGL1 <----------DOF2--------->LBD16           ---------->DOF2 --------->ANAC58 --------->AHL20(2)
 
aaacagagaggtctttgatttgatctcctgaacaagagcaaagagaaacagagtaaagcttgagctaaaaagccatgaaaagtctttaaaatatgcaatt  13413000
                                                                                                   <
                                                                                                 ---
                                                                                                 <--
    ----------->GT1                                                                           ------
 <-------TEIL                                                                                -------
-------TOE2(3)                                              <---------ARR11(3)            ----------
-------------AtSPL8                                        <---------CCA1(2)              <---------
------>DOF2                                              --------->TOE2(3)               -----------
---->AHL20(2)            ----------->GT1                 <---------DAG2 --------->ANAC46 -----------
---->YAB1    ---------->DOF2      *TSS                   --------->TOE1(3)         ----------->RAV1(1)
 
aaagtacatgtaaaaaaaaagacatggatggatatatcagtgaggcattttcatcaaataccttatcttcactctgcgaaacagagcaacataccaaaaa  13413100
                                <---------ARR14(2)
      <---------AtMYB61         <---------GLK1(2)
 <------MYB83                   <---------ARR11(3)
 <------MYB46(1)                --------->ARR11(3)
<---------AtMYB61               <---------ARR14(3)
--------P             --------->At4g35610                                              <---------ZAT6
------>ALFIN1      --------->At4g35610                                               ----------->GT1
-------REM1(1)     <---------At4g35610                                             --------->ZAT14
--->DAG2           --------->ZAT2          --------->AHL20(2)                     <---------REM1(1)
--->DOF2           <---------ZAT2          <---------AHL20(2)                     --------->ALFIN1
----->AGL15       ----------->RAV1(1)----------->GT1                            <------MYB46(1)
------AGL15      <-----------RAV1(2)--------->MYB59            --------->CCA1(2)<------MYB83  <-----
------>AGL1   ------->TEIL      --------->ARR14(3)      --------->CCA1(2)---------->DOF2 --------->ARR11(3)
------>AG<---------ANAC46     ----------->ARR10      <---------YAB1   >>>>>>>>>TBF1<---------ZAT14
 
gtgtaggttttggtgtgaacccagcagatggagaagattttggtaaaaaaatagtgaagatagaagagatgaagaagaaaggaaggtgtagtgatattgt  13413200
                            <---------ANAC58
                            <---------ANAC58
                            <---------ANAC46
                            --------->bZIP60(1)
                            --------->TGA1a
                            <---------TGA1a          <------ZmHOX2a(1)
                            <---------bZIP60(1)     <---------YAB1
                            <---------bZIP60(2)    <---------TOE2(3)
   ----------->GT1         <-----------------------TaNAC69(2)
  --------->DAG2          <---------TGA2(2)     <---------ANAC58                     <------ZmHOX2a(1)
------HVH21      <---------MYB52(1)             <---------ANAC58         --------->At4g35610       <
 
cagagaaggtgaagttggccgtttgatagtgacgtccacaaatggatttttgcttaggattgaagaatgcagaagaagcagagaagtaggagaacataaa  13413300
                                                                --------->At4g35610
                                                                --------->ZAT2
                                                                <---------At4g35610
                                                             <---------At4g35610
                                                             --------->At4g35610
                                                            ------->GAMYB
                  ------->GAMYB                            <------------AtMYB77
               ------>MYB46(1)                             --------->MYB46(3)
               ------>MYB83                            --------->At4g35610
               --------->MYB52(1)                      <---------At4g35610
             <---------MYB59                       ------>NtERF2<---------ZAT2
   <---------ANAC46  --------->TOE2(3)             ----------->RAV1(1)
  <-----------------------TaNAC69(2)              ----------->HVH21      <<<<<<<<<GATA-1
--------->WRKY12 <---------MYB111(2)              <---------ETT(1)   <---------DAG2
--------->WRKY38(1)  --------->TOE1(3)  --------->ANAC58  -------->P <----------DOF2
---------MYB52(1)--------->MYB46(3)     --------->ANAC58--------->MYB46(3)                   <------
 
ccgttggcctataaaacctaacaaccttagttttttgtcttcgaagcaaaactccgacagcaaccgctgctgctttatctattctcgttttttttttggt  13413400
                                                                   --------->TOE2(3)
                                                   --------->AHL20(2)          --------->AHL20(2)
        <---------CCA1(2)                   --------->ANAC58      --------->ATHB12
    ------->GAMYB                           --------->ANAC58      <---------ICU4
   --------->ANAC46                       ---------->DOF2         --------->YAB1
   --------->ANAC58                    --------->ANAC58          <---------ATHB12
   --------->ANAC58                    --------->ANAC58          --------->ICU4<---------AHL20(2)
<---------WRKY38(1) xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <---------AHL20(2)--------->YAB1
---MYB46(3)    ------>ZmHOX2a(1)       --------->ANAC46--------->YAB1--------->AHL20(2)    <--------
 
tagacaacgccatctctcctccctctctccctctctccctctacgcaaagccaaatatttataagaaaatcattaaacataaaaaaattcaaaatccagt  13413500
<- Previous    Next ->

AGI:  At4g26580.1   
Description:  protein binding / zinc ion binding. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G55970.1); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G55970.2); similar to hypothetical protein [Vitis vinifera] (GB:CAN74282.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)
Range:  from: 13411450    to: 13413035    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

    printer-friendly version