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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                         <---------ANAC55(2)
                                         --------->ANAC55(2)
                                         <---------ANAC58
                                         <---------ANAC58
                                  ----------->RAV1(1)
                                 --------->ANAC46
                               --------->ANAC58
                               --------->ANAC46
                          <-------TEIL<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)--------->TOE1(2)
   <---------ZAT6      <---------At4g35610              ---------->DOF2  --------->TOE2(2)
---------DOF2          --------->At4g35610     <---------------AGL15    ----------->RAV1(2)   <-----
-->P               --------->GLK1(2)<---------ICU4  ---------->DOF2   <---------ALFIN1        <-----
-MYB52(2)      --------->YAB1  --------->ANAC58------>ZmHOX2a(1) >>>>>>>>>MYB98         ------>ZmHOX2a(1)
 
cctttagtgagaaccgaatcagaatcagcttcatacacaacattacgttcctcatcaaagaaagccctaacccaaacctgagaaacacatccttctactt  13383200
                                             --------->LBD16
                                           --------->HSFB2a(2)
                                     --------->GLK1(2)
                                     <-----------ARR10
                                    --------->ARR14(2)
                                    <---------ARR14(2)
                                    <---------GLK1(2)                    <----------DOF2
                                   <---------At4g35610      <---------ANAC46
                               <-----------HVH21        --------->At4g35610
-----DOF2                     --------->ALFIN1          <---------At4g35610                    -----
----DAG2             --------->GLK1(2)     <---------HSFB2a(2)      <-----------GT1     --------->ATHB12
 
tattctccctcgtcttgaattgagaatcgagaggtgtcagattcttcccgtagaacataagctgctcgtatttagcctttggctcttgtaccgattggaa  13383300
                                                                                                  --
                                                                                                <---
                                                                                            --------
                                                                                           ---------
                                               <---------ARR11(3)                          <--------
                                       <------MYB83                                        ---------
                     <---------ANAC46  <---------MYB46(3)                                  ---------
                    <---------DEAR3(1) <------MYB46(1)                                     <--------
        ------>ZmHOX2a(2)             <---------AtMYB61                          <---------MYB46(3)
       <------ZmHOX2a(2)     --------->ARR11(3)--------->ARR11(3)               <---------AtMYB61---
      <---------ARR11(3)     <---------ARR11(3)<---------ARR14(3)      <---------REM1(1)  <---------KAN4(2)
      --------->ARR11(3)    <---------At4g35610--------->ARR14(3)   --------->ICU4 --------->ALFIN1<
----->DOF2    <---------CCA1(2)    --------->ATHB12               <---------At4g35610   <------ZmHOX2a(1)
 
aagcttgacgatctcttgtagcttcggtggaagctcttcgattggttgaaggtctccatagctcgacggagatgatgaagccgatggtggaggaacaatc  13383400
                            --------->SPL7
                            <---------LBD16
                          <---------SPL7
------->LBD16          --------->ARR11(3)
------LBD16            <---------ARR11(3)    --------->HSFB2a(1)
->KAN4(2)            --------->ICU4         <---------HSFC1(2)
>KAN4(1)   <---------HSFC1(1)               <---------HSFB2a(1)
-HSFB2a(1) --------->HSFC1(1)               --------->HSFB2a(1)
>HSFB2a(1) <---------HSFB2a(2)    ---------->DOF2
>MYB46(3)  --------->HSFB2a(2)--------->LBD16<---------HSFB2a(1)
-KAN4(1)  <---------LBD16------>ZmHOX2a(2)  --------->HSFC1(2)                        --------->LBD16
------>LBD16         <---------YAB1        --------->ARR14(2)<---------ZAT6           <------NtERF2
-------GAMYB  ---------->DOF2<---------DEAR3(1)  ----------->HVH21                  <---------LBD16
 
ccggttgaaattttctggaaagtgatgatcgtccggcgaaaggaaggaacttccgacggttttagtggtcgtagaagaagggttttggccggataatgga  13383500
                                            --------->ANAC58          ------>NtERF2
                                            --------->ANAC58       --------->ZAT2
                                        ---------->DOF2            <---------At4g35610         <----
               <---------MYB52(1)       <------ZmHOX2a(1)          <---------ZAT2              -----
            <-------TEIL       --------->ANAC46----------->RAV1(1) --------->At4g35610    <---------HSFC1(2)
 
ttgaagaaaacaaggtccgtttgaatgggattaaacgaagcgaggaagcgcaacaagaagaagacatcgctgctgccatagtcgcgaacttgaaacttcg  13383600
                                                                                                  --
                                                                              --------->LBD16  <----
                                                                            <---------LBD16    -----
                                                                    <------MYB83              <-----
                     --------->ARR11(3)                            --------->MYB46(2)         ------
                     <---------ARR11(3)                            <---------TOE2(3)          <-----
            <---------YAB1                                         --------->MYB111(1)    --------->LBD16
            --------->ICU4                                         --------->MYB59       <---------LBD16
         --------->ICU4                                        --------->WOX13(1)       <---------LBD16
       <---------At4g35610 ------>ZmHOX2a(1)    *TSS         ------------>CBF<---------LBD16  ------
-----HSFB2a(2)   ---------->DOF2   <---------DAG2           ------>NtERF2 <---------ARR14(2)  <-----
---->HSFB2a(2) <---------YAB1      <----------DOF2  ------------>CBF<------MYB46(1) --------->AHL20(2)
 
agagagactgagatgatgatgaaagctctccttcttcactttttctgagtcaaaaaccaataccgccaattaggtagtaaccgggaattaaaccgggaat  13383700
                                                                                                 ---
                                                                                                 <--
                                                                                                ----
                                                 <---------ICU4                                 ----
                                                 --------->ATHB12                               <---
<---------MYB59                                  --------->ATHB51                               ----
----->TEIL                           <--------P --------->AHL20(2)                             -----
-----HSFB2a(1)                      <-------GAMYB<--------HAHB4            <---------------AGL15<---
---->HSFB2a(1)                     ----------->GT1                        --------------->AGL15<----
----KAN4(2)                     <---------ANAC46--------->ICU4           --------->YAB1    ---------
---->TaMYB80                  <-----------RAV1(1)--------->YAB1--------->ANAC46    <------ZmHOX2a(1)
----------AtSPL8            <------------CBF<---------YAB1  --------->ARR14(2)    <----------ID1<---
--------->AtSPL8         ------------>CBF--------->ICU4     <---------ARR14(2)   <---------TOE2(3)
----------AtSPL3  ----------->GT1  <---------ANAC46 --------->YAB1   <----------DOF2 ---------->DOF2
 
gtaccaaaatccaaaaattagatgtaaaatcaattgtggggttgattatgaataattagaaagtatacgactcttttcataaataaggaaaagaaaaaga  13383800
                                                                                      --------->AHL20(2)
                                                                                     <---------YAB1
                                                                                    --------->AHL20(2)
                                                                                   --------->YAB1
                                                                                   <--------HAHB4
                                                                                  <---------YAB1
                                                                              --------->LBD16
                                                                              <------NtERF2
                                                                              ------>NtERF2
    <---------RVE1(1)                                                        --------->ANAC58
   <---------GLK1(2)                                                         --------->ANAC58
   <---------ARR11(3)                                                       --------->SPL7
   --------->ARR11(3)                                                     <-----------HVH21
------>ARR11(3)                                                          --------->TGA1a
-------ARR11(3)                                                  --------->TOE2(3)--------->ICU4
----->CCA1(1)                                                   --------->At4g35610<---------ICU4
----->RVE1(1)                                                   <---------At4g35610--------->ATHB51
------RVE1(1)                                               <-----------HVH21--------->RAP2.6(2)
----->GLK1(1)                                              --------->MYB52(2)--------->ANAC46
---->ARR11(3)                                             --------->SPL7 --------->ANAC58
------GLK1(1)                                          <---------ANAC58  --------->ANAC58
-----ARR11(3)                           --------->ARR14(2)<-------TEIL   --------->ANAC46          -
->DOF2<---------AHL20(2)             ------>ZmHOX2a(1) <---------ANAC46  <---------TGA1a         <--
------CCA1(1)     --------------------->WRI1           <---------ANAC58<---------ALFIN1<---------AHL20(2)
 
tatctagattttttttgttttgttttgaagcatcgtcttcctggttcttcgttctcttgcgttcgtcacctcaaacacgtccgccattattatatatcaa  13383900
                                           --------->AHL20(1)
                                           --------->AHL20(2)
                                           <---------AHL20(2)
                                          <---------AHL20(2)
                                      --------->AHL20(2)
                                      --------->AHL20(1)
                                      <---------AHL20(2)
                                     --------->AHL20(2)
           <---------ARR14(2)        <---------AHL20(2)
           --------->GLK1(2)   --------->ANAC58                                  --------->AHL20(2)
           --------->ARR14(2)  --------->ANAC46    --------->AHL20(2)            <---------AHL20(2)
  <---------ICU4               --------->ANAC58 <---------AHL20(2)      <---------AHL20(2)
  --------->YAB1        <---------------AGL15  --------->AHL20(2)       --------->AHL20(2)
 <---------ATHB12       --------------->AGL15  <---------AHL20(2)      <---------AHL20(2)
-------->WOX13(1)     >>>>>>>>>>>>>>>>>LFY--------->AHL20(2)           --------->AHL20(2)
-------ATHB12     <----------DOF2 --------->WOX13(1)        <----------DOF2 --------->YAB1     <----
 
atcaatcatgtccgaatccagcttttaccaatgtaagcaattaaattaaattaaataaaaacacttttatcaaatttaatcaaattaaaaaactgtccct  13384000
                                                                                      ------>ZmHOX2a(2)
                                                                                     <------ZmHOX2a(2)
                                                                                    --------->ARR11(3)
                                                                                    --------->ARR14(2)
                                                                                    <---------ARR11(3)
                                                                                    --------->AGP1
                                                                                    <---------ARR14(2)
                                                                                  ----------->ARR10
                                                                                =============HOX2a_HOX2a
                                                                                ------>ZmHOX2a(1)
                                                <---------GLK1(1)          <----------DOF2
                                                <---------At4g35610    <---------TOE2(3)
                                    ---------->DOF2                  *TSS <---------ANAC58
         --------->GLK1(2)       --------->ANAC46               <---------YAB1 --------->TOE1(3)
        <---------GLK1(2)       --------->LBD16------->TEIL  <-----------GT1   --------->TOE2(3)
------DOF2   <------------CBF  ----------->RAV1(1)    <---------MYB52(1)  <---------ANAC58
 
ttcttatctgagattctattgtttctgtctacttccacagaaagaaactgcatctccgtttttttttctgatttgaggctttccttagatccttgagagc  13384100
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AGI:  At4g26500.1   
Description:  ATSUFE/CPSUFE/EMB1374 (EMBRYO DEFECTIVE 1374); enzyme activator/ transcription regulator. Identical to SufE-like protein, chloroplast precursor [Arabidopsis Thaliana] (GB:Q84W65;GB:O65584); similar to BolA-like family protein [Arabidopsis thaliana] (TAIR:AT1G55805.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66829.1); contains InterPro domain Fe-S metabolism associated SufE (InterPro:IPR003808); contains InterPro domain BolA-like protein (InterPro:IPR002634)
Range:  from: 13382206    to: 13383649    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At4g26510.1   
Description:  uracil phosphoribosyltransferase / UMP pyrophosphorylase (UPT1). similar to uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative [Arabidopsis thaliana] (TAIR:AT1G55810.2); similar to uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative [Arabidopsis thaliana] (TAIR:AT1G55810.3); similar to uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative [Arabidopsis thaliana] (TAIR:AT1G55810.1); similar to hypothetical protein OsI_034512 [Oryza sativa (indica cultivar-group)] (GB:EAY80553.1); similar to hypothetical protein O
Range:  from: 13384070    to: 13388297    Orientation: Forward
Links:  TAIR  MIPS 
 
 
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