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AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                                             ------>MYB83
                                                                                             -------
                                                                                             ------>MYB46(1)
                                                                                             -------
                                                                                            --------
                                                                 --------->ATERF1(1)       <--------
                                                                <---------At4g35610        ---------
                                                                <------MYB83               <--------
                                                                --------->At4g35610        ---------
                                                                <---------ATERF1(1)        ---------
                                                                <------MYB46(1)            <--------
                                                               --------->ALFIN1            <--------
                                                               <---------AtMYB61           <--------
                                                               <---------DEAR3(1)         --------->MYB46(3)
                                                           --------->ANAC58            <---------WRKY12
                      <-----------------AG                 --------->ANAC46            <---------ETT(2)
                      <-----------------AGL2               --------->ANAC58            <---------WRKY38(1)
                  ---------->DOF2                         <---------LBD16      --------->WRKY38(1)
            ---------->DOF2                              <---------ALFIN1      ----------->HVH21
        --------->TOE1(3)                               <---------ZAT14        --------->WRKY12    -
  <---------------AtSPL3               <---------ICU4<---------At4g35610     <---------At4g35610   <
  <---------------AtSPL8              <-------TEIL   <---------ZAT2          --------->At4g35610----
  --------------->AtSPL8           --------->ATHB12  --------->ZAT2 <------NtERF2     --------->WRKY18(1)
  --------------->AtSPL3          --------->ICU4     --------->At4g35610   <-----------RAV1(2) -----
 
gattagaggtaccttcaaagtcaaagctcattttggaatgattcattactcttatcagctgcacgggaggtgccaacttcagatgaccggtccaccaacc  13381200
      --------->GLK1(1)
      <---------GLK1(1)
   <---------YAB1
->P------>ZmHOX2a(1)
-->MYB52(1)
->MYB55(1)
-MYB46(2)
>DEAR3(1)
-ALFIN1
>AtMYB61                                             <---------ZAT14
>MYB46(3)                                       --------->ZAT14
-MYB111(1)                                      <-------TEIL
-MYB55(2)                                       <---------ZAT14                                -----
-MYB111(2)                                  --------->ANAC46                            <----------DOF2
-------->ARR14(2)                           <---------------AtSPL8                ------------------
---------ARR14(2)    --------->ANAC46    <---------ARR14(2)                       <----------DOF2
----->LBD16   <---------ICU4             --------->ARR14(2)                 ---------->DOF2  <------
-->GAMYB   --------->ANAC55(2)      ---------->DOF2  --------->ZAT14   --------->At4g35610   <------
 
ggaatcctgatttctcgtaattgcacgacgaagaaatgaaaaagaatacggtacagttctctgagtcagtagtcatcttcaaagtctttagctttggcat  13381300
                                                                       <---------ARR14(2)
                                                            --------->ZAT6            --------------
                                                         --------->ZAT18        ------>ZmHOX2a(2)
                             <---------ALFIN1            <---------ZAT18       <------ZmHOX2a(2)
---->ICU4               -------->P----------->GT1        <---------ZAT14      --------->ARR14(2)
----->TaNAC69(2)     <---------ANAC58             --------->ARR11(3)   --------->ARR14(2)          -
---ANAC58            <---------ANAC58   ---------->DOF2  --------->ZAT14      <---------ARR14(2)   <
---ANAC58   <-----------GT1--------->ANAC46   ---------->DOF2         --------->MYB46(3) <----------
 
gtttattcaactatatttctatttgcttacccacaacttgtataaaagaaaaagacctagtgaactctatccaagaaccgagatcggagtttgtactatt  13381400
                                                      ------>ZmHOX2a(2)
                                               <---------ICU4
                                               --------->ATHB12
                                               --------->ATHB51
                                              --------->ICU4
                                              <---------YAB1
                                              <---------ATHB51
                         <---------YAB1  --------->ARR11(3)
                        <-----------GT1  --------->AGP1
                        --------->ARR11(3)  --------->TOE2(3)
                        <---------ARR11(3) <-------TEIL
                   <---------ARR11(3)    --------->ARR14(2)
                   --------->ARR11(3)    <---------ARR14(2)
                 ----------->ARR10       <---------ARR11(3)
               ---------->DOF2    ---------->DOF2<---------WOX13(1)
->AtSPL8 --------->GLK1(2) <----------DOF2<------ZmHOX2a(2)--------->ANAC58                 <-------
-------------->AGL15<---------RVE1(1)   --------->At4g35610--------->ANAC58             --------->AHL20(2)
---------------AGL15<---------CCA1(1)   --------->GLK1(1)  --------->ANAC46             <---------AHL20(2)
-GT1---------->DOF2--------->AHL20(1)<---------At4g35610 --------->ANAC46      <-----------RAV1(1)
 
tccaagataaagaaactggaaagatattatctttctatgaagcagatccataattgatccacaagacacagtgccaagaccaatgttgtattttaataca  13381500
                      ---------->DOF2                 --------->ANAC46
              ----------->RAV1(1)                  <-------TEIL
              --------->MYB52(1)               --------------->AtSPL3
             --------->AtMYB61                 <---------------AtSPL8    <------MYB46(1)
            --------->MYB46(3)             ---------->DOF2           <-----------RAV1(1)  ----------
      ====================RAV          --------->ANAC58      --------->At4g35610<----------DOF2
      ----------->RAV1(2)              --------->ANAC58 --------->YAB1   <---------DEAR3(2)
     --------->MYB52(1)              ---------->DOF2  --------->ANAC58   <------MYB83<------ZmHOX2a(1)
----GT1--------->TOE1(3)           --------->AtMYB61  --------->ANAC58   <---------MYB46(3)       --
 
gttcaacatacctgaaccaccagagaaaagaattaagaccaaaagcaaaagaggtacaagcattagatgcctatgttggttccctttaggacttaaagta  13381600
                                                                           --------->ARR11(3)
                                                            <---------ARR14(2)
                                                            <---------ARR11(3)
                                                            --------->ARR14(2)
                                                   ------>MYB83            <---------ARR11(3)
                                                   ------>MYB46(1)         <-----------ARR10
                                                  ----------->RAV1(1)     <---------GLK1(2)
              --------->ANAC46                   --------->AtMYB61     --------->YAB1
              --------->ANAC58               <---------ARR14(2) <-----------GT1
        ---------->DOF2      <-----------GT1 --------->ARR14(2)<---------AHL20(2)
>DOF2----------->GT1      --------->TOE1(3) <----------TaMYB80 --------->AHL20(2)  <----------DOF2
------->YAB1  --------->ANAC58  *TSS   <-----------GT1     <------ZmHOX2a(1) --------->TOE2(3)
 
atcaaaatcagtaaaacacacaagaagaagcttaaccattttttagcatataccaacacagaggattttaatattcaaaatctcaactttgatcaaaaaa  13381700
                                                   ----------->GT1
                                                   <------MYB83 <---------At4g35610
                           ---------->DOF2         <------MYB46(1)      <-----------GT1
                       <-----------RAV1(2)       <--------P   <-----------RAV1(2)
             <-------TEIL <------ZmHOX2a(1)     <---------ANAC58--------->At4g35610
             ------------>CBF                   <---------ANAC58<---------ZAT2
            --------->CCA1(2)    --------->DAG2--------->ATHB12 --------->ZAT2               <------
            <<<<<<<<<<<<<<<<<LFY---------->DOF2<---------MYB46(3)       --------->ZAT6     <--------
       ---------->DOF2 <---------LBD16 <---------HSFB2a(2)  --------->AtMYB61           ---------->DOF2
 
aaaaaaaaaaaaaagatacaatggtctcaggaaagaaaagttgcagaaattggttggctaaaaccacagctggtttcactagacaggtatgtaaagctga  13381800
                                 <----------DOF2
                           <-----------RAV1(1)              --------->ZAT14              <----------DOF2
                      --------->At4g35610                   <---------ZAT14   <---------At4g35610
      <-----------GT1 <---------ZAT2                     ------->GAMYB        ----------->RAV1(2)
---YAB1 --------->ANAC46 --------->MYB52(1)           --------->MYB52(1)      --------->At4g35610
-At4g35610            <---------At4g35610      <---------ANAC55(2)         <------ZmHOX2a(2)
 
ttgtatataaaaccccacaagtctcagctaatggggctttaagaaacatcacatgtctaacggtagactgaaacagggatcatctgaaactcctttcaca  13381900
                                  ------>MYB46(1)
                                  ------>MYB83
                                  <---------CCA1(2)
                                ------->GAMYB
                                --------->AtMYB61
                              -------->P
                          --------->ANAC58
                          --------->ANAC58  <----------DOF2                    <---------ANAC55(2)
             --------->YAB1   --------->ANAC58                       -------->P--------->ANAC55(2)
         <---------AHL20(2)   --------->ANAC58       --------->ZAT14 ------>MYB46(1)             ---
   --------->ANAC55(2)  ---------->DOF2 <----------DOF2              ------>MYB83 --------->ATHB12 <
 <-----------GT1---------->DOF2--------->MYB46(3)<-----------GT1  --------->MYB46(3)             ---
 
ttttttacttattttatcagaaagaagtaaagcaaccaaatctctttctttttttctgtagtccctcaaaccaacttgcatcacttgattagacaatacc  13382000
                <---------HSFC1(1)
                <---------HSFB2a(2)              <---------TOE1(2)
                --------->HSFB2a(2)       <---------HSFB2a(1)             <-----------GT1
      --------->ARR14(2)                  --------->HSFB2a(1)          --------------->AtSPL8
      --------->GLK1(2)                   --------->HSFC1(2)           <---------------AtSPL8
      --------->ARR11(3)                  <---------HSFC1(2)   <---------ANAC58
      <---------ARR14(2) --------->AHL20(2)     <---------AtLEC2    ------->TEIL
--->MYB46(1) --------->GLK1(2)        --------->ANAC58         <---------ANAC58                  <--
----------DOF2  --------->HSFC1(1)    --------->ANAC58         <---------ANAC46         --------->LBD16
--->MYB83   <---------GLK1(2)         --------->ANAC46        <------NtERF2       <-----------GT1<--
 
aactttgagtatctagattctagaagaattaaaaaatgaacaagaaacttcgcatgtctaatggtggcatgaatatagtaccatttttctccccaaattc  13382100
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AGI:  At4g26488.1   
Description:  other RNA
Range:  from: 13380353    to: 13381633    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At4g26490.1   
Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G56050.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN70940.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66828.1); contains InterPro domain Harpin-induced 1 (InterPro:IPR010847)
Range:  from: 13380417    to: 13381448    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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