Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                             --------->YAB1                                          <---------YAB1                                          ----------->GT1                                        --------->YAB1                                        <---------ICU4                                       --------->ICU4                                 <---------ARR14(2)                                       <---------ATHB12                               --------->ARR14(2)                                       <---------ATHB51         <XXXXXXXXXXXXXXXXXXXXMIR1886.3                                   <---------ZAT14              XXXXXXXXXXXXXXXXXXXX>MIR1886.2                                   <---------ZAT18        --------->GLK1(2)<---------AHL20(2)                                   --------->ZAT18       <---------GLK1(2) --------->AHL20(2)                                   --------->ZAT14 ---------->DOF2       <----------DOF2                            <---------ETT(2)      <---------AHL20(2)  <---------ARR11(3) -GT1                       --------->ETT(2)      --------->AHL20(2)  --------->ARR11(3)   tatgtataaattgacaaatttagcctaaggtcgatagtgcaataatgaaaatttaaagagattctaaaatgaaatctttaaattttcgaattctcaagtt  13369100                                --------->LBD16                               --------->ANAC55(2)                               --------->ANAC46                          --------->ZAT14                                                         ---                          <---------ZAT14                                                         <--                        <---------ZAT18                                                           ---                        --------->REM1(2)                         xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                        <---------ZAT14                          --------->ANAC46                 <--                 <---------GLK1(1)  <---------WOX13(1)        --------->ZAT14                    ----       <------ZmHOX2a(1)--------->ZAT14                       <---------ZAT14               <--------   ---------->DOF2   <---------ANAC46    ---------->DOF2  <---------ICU4  ------->TEIL     --------->AHL20(2)   agaagaaaaggatggatagatttctgtgtacacccgtgattaacaaagtcatggatttgatcaatacactgaattgaacccatggtcccaaaattaactt  13369200                                                                                          <---------ANAC58                                                                                          <---------AtLEC2                                                                                          <---------ANAC46                                                                                      --------->ALFIN1                                                                                      <---------ANAC58                                                                                      <---------ANAC58                                               <---------ETT(2)                      ------->MYC2                                               <---------bZIP60(1)                   ------->MYC3                <---------AHL20(2)        <---------ICU4                             <-------MYC3                --------->AHL20(2)    --------->AHL20(2)                             <-------MYC2               --------->AHL20(2)   ----------->GT1       --------->ANAC58        <xxxxxxxxxxxxxxxxxx        ----------->RAV1(1)        --------->DAG2         --------->ANAC46        <---------ANAC58 ------>HSFB2a(2)                 ---------->DOF2         --------->ANAC58       <-------TEIL -------HSFB2a(2)             <----------ID1   --------->bZIP60(1)            <---------ANAC58 ------------>AGL15        ----------->TGA1    --------->TGA2(1)              <---------ANAC58 -------------AGL15      <---------At4g35610   <---------TGA2(1)     --------->ZAT6<xxxxxxxxxxxxxxxxx ------------->AGL3      --------->At4g35610   --------->ETT(2)    <-----------GT1<---------ANAC58 ---GT1<----------ID1  <---------WOX13(1)--------->ICU4 <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------ANAC58   ccaaaaaatgcaacaaattaaaatgactgatgacgaaaaagtaaatatgacgacatttacacacaagagtaaccctacttaggtgcatgtgtgcgtggtt  13369300                                                                                                   --                <---------TOE1(3)                                                                  --                <---------TOE2(3)                                                                xxxx                --------->MYB59                       <---------GLK1(2)                       <------       --------->ZAT18                              <---------TOE1(3)                         -------   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           <-----------GT1                           --------  xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     <---------YAB1                                  --------->AHL20(2) xxxsmallRNA(si3)       <---------AHL20(2) --------->ARR11(3)         <----------DOF2  ----------->GT1 xxxsmallRNA(si3)----------->GT1         <---------TOE2(3)    --------->ANAC46       ---------->DOF2-   tctaagtagtgggcagtttaggttaattcattttgaagaaaataagatagttttaagcttctccacgaagtactttctcaaaatgcttaaagttaataat  13369400                                      <<<<<<<<<RAP2.2                               --------->At5g28300                             --------->ANAC58                             --------->ANAC58            ---------->DOF2------>ZmHOX2a(1)                             --------->ANAC55(1)    --------------->AGL15                             --------->ANAC46       <---------------AGL15 <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <---------YAB1<-----------------AGL3        --------->ARR11(3) ----->TEIL               --------->ZAT18        <-----------GT1--------->At4g35610 ------>P                 <---------ZAT14     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <---------TOE2(3)----------->TBP xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ---ICU4                <---------ZAT14  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <---------ARR11(3) -->YAB1                --------->ZAT14 <---------WOX13(1)      <---------At4g35610 ->ICU4                 <---------ZAT18xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       <---------CCA1(2) ---------->RAV1(2)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <---------AHL20(2)    <---------CCA1(2)   caacctggtattggtaatgcagacagagcacacggtatttagattgctattctactatataaagagagctcatccttctcatatatctcaacatatactt  13369500                                                                               ====================HOX2a_HOX2a                                                                               <------ZmHOX2a(1)                                                                           ---------->DOF2         xx                                                                        ------>ZmHOX2a(1)    xxxxxxxx                                             --------->ANAC58           <---------HSFB2a(2)  xxxxxxxx                                             --------->ANAC58           ===========================HOX2a_HOX2a                                             --------->ANAC46           --------->LBD16     <------ZmHOX2a(2)                 <---------ICU4            <-----------GT1              --------->HSFB2a(2)--------->ARR11(3)               <---------AHL20(2)        *TSS--------->ANAC55(2)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              --------->YAB1  <---------AHL20(2)                   <---------GLK1(1)       <---------ARR11(3)             ----------->TBP <---------AHL20(2)                    --------->GLK1(1)    <xxxxxxxxxxxx    --------->YAB1           --------->AHL20(2)                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   actcaaacatattctataaaaatttcccaaattaaatatgctaatttacgcattggattttttcatccgatttcctcgaaaggatgactcacagatcatg  13369600                                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                  ------>MYB46(1)                                                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                  ------>MYB83                                                  <xxxxxxxxxxxxxxxxsmallRNA(i)                                ----------->HVH21<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                           <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                        ------->GAMYB           <---------MYB59                       --------->ANAC46  <---------ORA47(2)                    --------->MYB46(3)   <---------RAP2.3(1)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------ATHB12               --------->At5g28300xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               =========================MYC_MYB <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <xxxxxxxxxxxxx               <-------GAMYB  --------->TGA1a   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------AHL20(2)              ----------->GT1 <---------TGA1a  <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    --------->AHL20(2)             --------->ANAC58 <---------O2--------->ATERF1(1)                       <xxxxxxxxxxxxxxxx             --------->ANAC58<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                xxxxxxxxxxxxxxxxxxx           <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)------>NtERF2                        <xxxxxxxxxxxxxxxxxx         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<------NtERF2                     xxxxxxxxxxxxxxxxxxxxxx        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxsmallRNA(i)      <---------ANAC58       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------At4g35610               <---------At5g28300      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <---------SPL7            <---------RAP2.6(2)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------ANAC58      <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxsmallRNA(i)--------->ATERF1(1)       ------      <---------ARR14(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        <---------At4g35610       <xxxxx      --------->ARR14(2)================MYC_MYB<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxx     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<------NtERF2             <xxxxxxxxxxxxxxxxsmallRNA(i)  ---   <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <---------RAP2.3(2)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------RAP2.3(3) <------NtERF2<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <xxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------SPL7       ------   <---------ANAC46<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      ------>NtERF2 <---------ANAC58    <xxxxxxx  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------DEAR3(1) ----------->RAV1(1)<---------ANAC46 ------ <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <---------ANAC58<xxxxxxxxxxx xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxx>smallRNA(i)--------->MYB52(1)--------->RAP2.6(3)<----------ID1--------->At4g35610 <xxxxxxxx xxxxxxxxxxxxxxx>smallRNA(si3)--------->O2--------->At4g35610  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)< xxxxsmallRNA(i)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxxx   gaattgtgtataggcacggttaacaacggcacaagtgacaagacggcggaccaaatcaaggcgacaatggaagcggcttaccgtgtattatataggcatg  13369700               <---------AHL20(2)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)              --------->ARR11(3)              <---------ARR11(3)              <---------AHL20(1)              --------->AHL20(1)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        --------->ANAC58    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        --------->ANAC58   xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     xxxxxxxxxxxxxxxxxx>smallRNA(si3)        --------->ANAC46  <---------TOE1(2)                       <---------TOE1(2)             -----        xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                       <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               --------->At4g35610                <-----       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)---- <----------DOF2    <------MYB83       <---------ANAC58     <---------At4g35610  xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxsmallRNA(si3)    <------MYB46(1)    <---------ANAC58     <---------ZAT2   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) x>smallRNA(si3)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <---------ZAT18   <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxsmallRNA(si3)--------->MYB59    xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <xxxxxxxxxxxxxxxxxxxsmallRNA(si3) x>smallRNA(si3)   xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     --------->ZAT14   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --->AtLEC2   --------->AHL20(2)   <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxsmallRNA(si3)    --------->LBD16         <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <----- xxxxxxxsmallRNA(fl3) --------->PCF2 xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ---->TEIL   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<-----------HVH21xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --->ANAC58  <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <---------TOE1(3) xxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->ZAT2 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --->ANAC58 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<-----------RAV1(1)  xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)-- xxxxxxxxxxxxxxxsmallRNA(si3)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ---------DAG2<---------AHL20(2)<---------HSFB2a(2)    xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxx xxxxxxxxxxxxxxxsmallRNA(si3)   --------->HSFB2a(2)   xxxxxxxxxxxxxxxx>smallRNA(i)     <---------TOE2(3)   cacctttacctcgcaatatatttggtcccatgttcccgatgtcttacctccatgtcgcagtgagctcgagggttttgcacatactctctaaggtattaac  13369800                                             <---------DEAR3(1)                                             <---------RAP2.6(2)    --------->LBD16                                             --------->ETT(1)      <---------ANAC46        <---------AHL20(2)                  --------->RAP2.6(3)   <---------LBD16    --------->AHL20(2)                     <-----------HVH21     --------->MYB52(1)              ----    <---------AHL20(1)                   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                    <xxxx    <---------AHL20(2)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         xxxxxxxxxxxxxxxx    --------->AHL20(1)                <---------YAB1             <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <---------AHL20(2)                --------->ARR11(3)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   --------->AHL20(2)                <---------ARR11(3)   --------->CCA1(2)         xxxxxxxxxxxxxxxxx ---->YAB1                         <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            xxxxxxxxxxxxxxxxxxxx ----YAB1                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ----->TOE2(3)  <---------ANAC46  --------->YAB1    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->ALFIN1 xxxx>smallRNA(si3)              <---------YAB1<------NtERF2   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)< ----TOE2(3)    ----------->GT1  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  ---------->DOF2<---------MYB46(3) ------->AHL20(2)   <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------ANAC46 xxxxxxxxx>smallRNA(si3)     <XXXXXXXXXXXXXXXXXXXXMIR406 <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxx   ataaaataaatttatgttctgtataaatctgggttataatatcattgtcggctatatatgatataggtaccggagaaagtagtagagaatgggtggaaca  13369900                    <------ZmHOX2a(2)                   --------->GLK1(2)                   <---------ARR11(3)                   --------->ARR14(2)                   <---------ARR14(2)                   --------->ARR11(3)                   <-----------ARR10                   <---------AGP1                  <------ZmHOX2a(1)                  ===============HOX2a_HOX2a                 --------->HSFC1(2)                 <---------HSFC1(2)            xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                  xxxxx        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)            <---------At4g35610                     -----        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <------NtERF2                                <-----        --------->ALFIN1                        <xxxxxxxxxxxxxxxxxxsmallRNA(si3)          <---------ANAC58        <------NtERF2                          <---------LBD16                         --------->ARR14(2)      <---------ANAC46                        <---------ANAC46 --------->ANAC58        <---------ARR14(2)      <---------ANAC58                    <-----------HVH21    --------->ANAC58 <xxxxxxxxxxxxxxxxsmallRNA(i)      <---------ANAC58           --------->ALFIN1--------->LBD16              xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ------>DOF2xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------->ANAC46 <------ZmHOX2a(1)    <------NtERF2<- xxxxxxxxxxxxsmallRNA(i)  ------>ZmHOX2a(2)<---------MYB52(1)  <xxxxxxxxxxxxxxxxsmallRNA(i)   xxxxxxx xxxxxxx>smallRNA(si3)   xxxxxxxxxxxxxxxx>smallRNA(i)   --------->At4g35610  <---------DAG2 --------- xxxxxx>smallRNA(si3)------>ZmHOX2a(2)   <---------ANAC58     xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)----- >smallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   --------->MYB52(1)    <----------DOF2--------- xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       <---------ANAC58  ------>NtERF2   xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxx>smallRNA(fl3)   <---------WOX13(1)<---------SPL7 --------->ZAT18<---------ZAT18  <---------ANAC58   aaaggaaggcgtggatagaaggatctgatcgacaagtgttgatgcgttacgcggagcaagcggacaaggacttagtcgactttttggcagagccgtgccg  13370000  Previous    Next  AGI:  At4g26460.1    Description:  similar to GAMT1 [Arabidopsis thaliana] (TAIR:AT4G26420.2); similar to GAMT1, S-adenosylmethionine-dependent methyltransferase/ gibberellin carboxyl-O-methyltransferase [Arabidopsis thaliana] (TAIR:AT4G26420.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN72394.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22134.1); contains domain S-adenosyl-L-methionine-dependent methyltransferases (SSF53335) Range:  from: 13369541    to: 13370019    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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