Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                            <-------GAMYB                      ------------>AtMYB77                     ------->GAMYB                 <---------YAB1                          <---------ANAC46               <---------ICU4 -----GLK1(1) <---------YAB1 <-----------------------TaNAC69(2)<----------DOF2   --------->GLK1(2)  - ---->GLK1(1)<---------ARR11(3)                  <---------AHL20(2)             <---------GLK1(2)   <   ttcttcaaatttcaagattataacagacagttacgaagaaacacaactcattttatgttttgtgtcttttggcaaaactccaaattctgaacattgctct  13285400                                                                                                   <-                                                                                                   --                                                                                               ------                                                                                       <xxxxxxxxxxxxx                                                                                       <xxxxxxxxxxxxx                                                                                       <xxxxxxxxxxxxx                                                                                      <xxxxxxxxxxxxxx                                                                                      <xxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                                   <xxxxxxxxxxxxxxxxx                                                                                   <xxxxxxxxxxxxxxxxx                                                                                   --------->ZAT6 ---                                                                               <xxxxxxxxxxxxxxxxxxxxx                                                                               <xxxxxxxxxxxxxxxxxxxxx                                                                              <xxxxxxxxxxxxxxxxxxxxxx                                                                             <xxxxxxxxxxxxxxxxxxxxxxx                                                                             <xxxxxxxxxxxxxxxxxxxxxxx                                                                             <xxxxxxxxxxxxxxxxxxxxxxx                                                                             <xxxxxxxxxxxxxxxxxxxxxxx                                                                             <xxxxxxxxxxxxxxxxxxxxxxx                                                                            --------->GLK1(2)  ------                                                                            <-----------ARR10--------                                                                            <xxxxxxxxxxxxxxxxxxxxxxxx                                                                            <xxxxxxxxxxxxxxxxxxxxxxxx                                                                            <xxxxxxxxxxxxxxxxxxxxxxxx                                                                            <xxxxxxxxxxxxxxxxxxxxxxxx                                                                            <xxxxxxxxxxxxxxxxxxxxxxxx                                                                            <xxxxxxxxxxxxxxxxxxxxxxxx                                                                            <xxxxxxxxxxxxxxxxxxxxxxxx                                                                            <xxxxxxxxxxxxxxxxxxxxxxxx                                                                            <xxxxxxxxxxxxxxxxxxxxxxxx                                                                            <xxxxxxxxxxxxxxxxxxxxxxxx                                                                           <xxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                           <xxxxxxxxxxxxxxxxxxxxxxxxx                                                                           <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                           <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                           <xxxxxxxxxxxxxxxxxxxxxxxxx                                                                          <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                         <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                         <xxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                         <xxxxxxxxxxxxxxxxsmallRNA(si3)                                                                         <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                         <xxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                                                         <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                         <xxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                         <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                         <xxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                                                        <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                        <xxxxxxxxxxxxxxxxsmallRNA(se3)                                                              <---------ALFIN1<xxxxxxxxxxxxxxxxxxxxxx                                                             <xxxxxxxxxxxxxxxxsmallRNA(s)    ------>MYB83                                                            --------->ANAC58<xxxxxxxxxxxxxxxxxxxxxxxx                                                       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    ------>MYB46(1)                                                       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   --------                                                       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --------->AtMYB61                                                      <xxxxxxxxxxxxxxxxxsmallRNA(se3) <xxxxxxxxxxxxxx                                                    <xxxxxxxxxxxxxxxsmallRNA(se3) <xxxxxxxxxxxxxxxxxsmallRNA(si3)                                                    <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<---------MYB59                                                    <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxx                                                    <xxxxxxxxxxxxxxxsmallRNA(le3) <xxxxxxxxxxxxxxxxxx                                                   <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxx                                                   <xxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxx                                                   <xxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxx                                                   <xxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxx                                                   <xxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxx                                                   <xxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxx                                                  <---------LBD16--------->MYB46(3)<xxxxxxxxxxxxxxxxx                                                  <xxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxxx                                                  <xxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxx                                                  <xxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxx                                           <xxxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxxxxx                                          --------->GLK1(2) --------->ANAC58<xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                       <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxx                                       <xxxxxxxxxxxxxxxxxxsmallRNA(se3) <xxxxxxxxxxxxxxxxsmallRNA(fl3)                                       <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxx                                      --------->LBD16<xxxxxxxxxxxxxxxxxxxsmallRNA(s2)<xxxxxxxxxxxxxxx                                      --------->HSFB2a(2)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) ------                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                   <xxxxxxxxxxxxxxxxsmallRNA(i) --------->ANAC58<xxxxxxxxxxxxxxxxxxxx                                  <xxxxxxxxxxxxxxxxxxxxsmallRNA(l2)    <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                  <xxxxxxxxxxxxxxxxxxxsmallRNA(l2)    <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                                  <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)<xxxxxxxxxxxxxxxxxsmallRNA(se3)                                 <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                        --------->ATHB12 <xxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxxsmallRNA(fl3)             ----------->GT1     <---------SPL7  <xxxxxxxxxxxxxxxsmallRNA(le3)--------->YAB1---------            --------->DAG2       <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxsmallRNA(s)           ---------->DOF2      <---------ANAC58 <---------LBD16--------->ANAC58<xxxxxxxxxxxxxxxxxxxx      <---------------AGL15     <---------ANAC58 <xxxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxx -------->ARR11(3) <---------AHL20(2) <---------HSFB2a(2)  <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxx ---------ARR11(3) --------->AHL20(2)<---------ANAC46<---------PCF5---------->DOF2<xxxxxxxxxxxxxxxxxx   aaaatctaatataaaaagtaaaaaaatgaatggggcgttccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaacg  13285500   *TSS<-----------TBP --------ALFIN1 --------->RAV1(1) --->ANAC58 xxxsmallRNA(i) xxxsmallRNA(se3) xxxsmallRNA(s) xxsmallRNA(i) xxxsmallRNA(se3) xxxsmallRNA(fl3) xxxsmallRNA(fl3) xxxsmallRNA(se3) ------>RAP2.3(3) xxxsmallRNA(i2) xxxsmallRNA(le3) xxsmallRNA(l2) xxxsmallRNA(le3) xxxsmallRNA(fl3) xxxsmallRNA(se3) xxxsmallRNA(si3) xxsmallRNA(si3) ->GAMYB ->MYB52(1) xxsmallRNA(si3) xsmallRNA(se3) xsmallRNA(si3) xxxsmallRNA(si3) xxsmallRNA(se3) xxxsmallRNA(le3) xxxsmallRNA(fl3) xxxsmallRNA(se3) xxsmallRNA(fl3) xxsmallRNA(le3) xxsmallRNA(fl3) xsmallRNA(si3) xxxsmallRNA(fl3) xsmallRNA(le3) -->DOF2 xxxsmallRNA(si3) xxxsmallRNA(i2) xxxsmallRNA(si3) xxxsmallRNA(si3) xxsmallRNA(fl3) xxxsmallRNA(si3) xxxsmallRNA(se3) xxxsmallRNA(fl3) xxsmallRNA(le3) xxxsmallRNA(si3) xxxsmallRNA(fl3) xsmallRNA(si3) xxsmallRNA(se3)                                                                                 ---- xxsmallRNA(se3)                                                                               ------ xxxsmallRNA(si3)                                                                            -------- xxxsmallRNA(se3)                             --------->AHL20(2)                            --------- xxxsmallRNA(se3)                             --------->AHL20(1)                            --------- --->ANAC58                                  <---------AHL20(2)                     <---------RVE1(1) xxxsmallRNA(si3)                         <---------AHL20(2)                        <---------CCA1(1) >MYB55(1)                    ------------>CBF<---------AHL20(2)                   <---------ARR11(3) xxsmallRNA(si3)         --------->AHL20(2)  --------->AHL20(2)                    --------->ARR11(3) xxxsmallRNA(se3)      <----------DOF2   --------->AHL20(2)            --------->ZAT14      --------- xxxsmallRNA(si3) <---------ANAC58   ------->TEIL                      <---------ZAT14    <---------- xxxsmallRNA(se3) <---------ANAC58 <<<<<<<<<EIN3                    ----------->GT1<---------AHL20(1)   cccacattgatatatagtttgctagcttttaatacaatgtatattaaataatttagttttgtgatataaacagtaaacagaacaagatattttcacccaa  13285600                                                                                       --------------                                                                                    --------->YAB1                                                                                    <-----------GT1 ------->GT1                                                                     --------->WOX13(1) ---->DOF2              --------->YAB1                                  <---------MYB52(1) ->MYB46(3)          ================================================================================ >ANAC46             <---------------AGL15                   --------->TOE2(3) --------->DOF5.7(2) >ANAC58        <---------MYB46(3)               --------->AHL20(2)    --------->TOE2(3)    --------- >ANAC58      <---------MYB52(1)             ----------->GT1 ----------->GT1   <---------MYB52(1) --- -GT1      <---------TOE1(2)----------->GT1---------->DOF2  ----------->GT1   --------->TOE2(3)   <--   agttaaaaaatccaacgtttgttcaaaaataagaaaaaaactatccaaagttaaattatcaaatgttaaaaatcgttagacgttaatcacaatataaagg  13285700  <----------DOF2                                                                          ---------- ->AGL15                                                                                   --------->MYB52(2) ==MADS_MADS                                            <---------HSFB2a(2)              <--------P ->DOF2                                       --------->AHL20(2)           --------->AHL20(2)    <<<< ------>GLK1(1)                             --------->AHL20(2)   ---------->DOF2       <---------ZAT6 -------GLK1(1)                            --------->YAB1    --------->At4g35610      <---------TOE2(3)   aactcttttttttttttttgagttaagaaacacttagttgggccataaaaatataggtctagtagatgaaaggcccataaaatcaactagggttagttct  13285800              --------->LBD16              ------>NtERF2              <------NtERF2             --------->RAP2.6(2)             ----------->RAV1(1)             --------->DEAR3(1)             --------->RAP2.3(2)             --------->RRTF1(2)             --------->RAP2.3(3)             <---------ANAC46            --------->RRTF1(1)                  <---------ARR14(2)            --------->ATERF1(1)              --------->DEAR3(1)            --------->DEAR4(2)             --------->MYB52(1)            --------->RAP2.3(1)           --------->AtMYB61            --------->ORA47(2)            <---------ALFIN1            <------NtERF2                 --------->DEAR3(1)           <---------ATERF1(1)       <-----------TGA1                                              <-  <---------YAB1                    --------->ANAC46                                         <------- <-----------TBP                  *TSS   --------->MYB46(3)                               <<<<<<<<<NAM ->ARR10 --------->ZAT18 <-------TEIL<-----------HVH21   --------->RAP2.6(3)  <---------------AtSPL8 <<<<<TBF1<---------DEAR3(1)   ------>ZmHOX2a(1)--------->ARR14(2)            --------------->AtSPL8   tcttcttatagagcgccgcatataagcttcatccttctccgtcaccaccggctctgtatttcggcatttgtggagagaagaaggtactctcatccctttc  13285900       --------->TOE2(3)                       <---------At4g35610       --------->YAB1                          --------->At4g35610<------ZmHOX2a(2)    <---------CCA1(2)                ----------->GT1             --------->ARR11(3)              <--- ---------DOF2   <----------DOF2   ---------->DOF2               <---------ARR11(3)              <--- ---DOF2         <---------DAG2----------->HVH21           <----------DOF2                       ----   tctttcttatcttaatctccttttttaaaatttgtgacaaagtaaaatgagctaatctcgtctttaagatcatatgtcaaaactgaatttgagttttgat  13286000                                                                 ----------->HVH21       <-----------HVH21                                                                <XXXXXXXXXXXXXXXXXXXXMIR398B/C                                                               <---------MYB46(3)       --------->TOE1(3)                                                               <XXXXXXXXXXXXXXXXXXXXMIR398A                                   <---------ANAC46           <---------AtMYB61         --------->TOE2(3)                                   --------->ETT(1)           --------->ALFIN1        -------->P       ---------->DOF2           <-----------HVH21            <---------DEAR3(1)      ------->TEIL   <---------TOE2(3)            <-----------RAV1(1)        --------->ALFIN1  <---------ZAT14      --- ------ARR11(3)             --------->AHL20(2)             <---------AtMYB61 --------->ZAT14     ---- ------AHL20(1)          --------->YAB1                   <------ZmHOX2a(1)  --------->ZAT18     ---- ----->ARR11(3)    --------->CCA1(2) <------NtERF2  ---------->DOF2          <---------ZAT18     ----   atattcaggtaaagagagaagatagaaacataaaatgtcggagaagaagggaaggaaagaggaggtggtgaccagagagtacaccatcaaccttcacaga  13286100          ----------->GT1        <---------ANAC46                                        <---------ZAT6       <---------ZAT2                                         <---------At5g28300 --->NtERF2                         <----------DOF2  ---------->DOF2 ----->ANAC46           <----------ID1           <---------ANAC58                           <-------- ----->ANAC58      --------->HSFB2a(2)           <---------ANAC58 <---------MYB52(1)    <---------YAB1 ----->ANAC58      <---------HSFB2a(2)   ---------->ID1   <----------DOF2            --------->ICU4   cgccttcatagctggtaatttccaaaacaccaaaaacacttttgtcttattgcttcaaagcttttactgttagatagtggaattggaatgttgataatga  13286200                                                                                              <------                                                                                              -------                                                                  <---------ANAC58            -------                                                                  <---------ANAC46 <----------DOF2                                                              <----------DOF2      <---------------AGL15                                                          ------>ZmHOX2a(2) --------------->AtSPL8              <---------AHL20(2)                        --------->ARR11(3)  <---------------AtSPL3    <---------At4g35610                           --------->ICU4  <---------ANAC58--------->TOE2(3) -ICU4  <---------TOE2(3)            ----------->GT1    <---------ARR11(3)  <---------------AtSPL8  -   gctcttagctaatgttttaattcgattgctctctatggattgtgacattgaaatgtttgatcttctttgtgtgtaaaactagtacctttaagaagaaggc  13286300  Previous    Next  AGI:  At4g26220.1    Description:  caffeoyl-CoA 3-O-methyltransferase, putative. Identical to Probable caffeoyl-CoA O-methyltransferase At4g26220 [Arabidopsis Thaliana] (GB:Q9C5D7;GB:Q8LBF3;GB:Q9STR2); similar to caffeoyl-CoA 3-O-methyltransferase, putative [Arabidopsis thaliana] (TAIR:AT4G34050.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN83622.1); contains InterPro domain O-methyltransferase, family 3; (InterPro:IPR002935) Range:  from: 13283585    to: 13285332    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g26225.1    Description:  pre-tRNA. tRNA-Pro (anticodon: TGG) Range:  from: 13285432    to: 13285503    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g26230.1    Description:  60S ribosomal protein L31 (RPL31B). Identical to 60S ribosomal protein L31-2 (RPL31B) [Arabidopsis Thaliana] (GB:Q9STR1); similar to 60S ribosomal protein L31 (RPL31C) [Arabidopsis thaliana] (TAIR:AT5G56710.1); similar to 60S ribosomal protein L31 (GB:P46290); contains InterPro domain Ribosomal protein L31e; (InterPro:IPR000054) Range:  from: 13285834    to: 13286800    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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