Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    <--                                                                                                  <--                                                                                                  ---                                                                                                  ---                                                                                                  <--                                                                                                  ---                                                                                                  <--                                                                                                 <---          --------->LBD16                                    <---------ZAT2                      <---       ------->TEIL               <------ZmHOX2a(1)          <---------At4g35610              <------      <---------ARR14(2)        <---------ANAC46       ------->GAMYB                          <------  --------->At4g35610        --------->ALFIN1        -------->P        <---------GLK1(2)   --------->ALFIN1 ------->At4g35610    ------>NtERF2              --------->ANAC58    --------->ANAC58    <---------ANAC58 --------At4g35610   --------->ANAC58            --------->ANAC58    --------->ANAC58    <---------ANAC58 --ZmHOX2a(2)        --------->ANAC46          ---------->DOF2       --------->ANAC46    <---------ANAC46 ----ARR14(2)        --------->ANAC58        --------->ANAC58--------->At4g35610--------->At4g35610 - --->ARR14(2)      <---------ALFIN1          --------->ANAC58--------->ZAT2     <---------At4g35610<-   cagttgctgaaccggactcgtccacgcccgagtggaggatagaagtcaagaaagcaaccctcgagctgaacaagaaactctcggctgatcagcgtgtgca  13285100       <---------ZAT2       --------->At4g35610       --------->ZAT2       <---------At4g35610      --------->ANAC58      --------->ANAC58  --------->ANAC58  --------->ANAC58 -------ARR11(3) -------ARR14(3) ------>ARR11(3) ------>ARR14(2)                                                                           >>>>>>>>>ARR2 -------ARR14(2)                                                                           >>>>>>>>>ARR1 ------>ARR14(3)                                                                          --------->ATHB12 -------AGP1                                                                             <---------YAB1 ------CCA1(2)                                                                         <---------At4g35610 ------At4g35610                                                             <----------DOF2 ---At4g35610                          <------ZmHOX2a(1)                    ------>ZmHOX2a(2) ---ZAT14                           <-----------RAV1(2)                   --------->ARR11(3) ----->ZmHOX2a(2)          <-----------GT1                          <----------DOF2<-----------HVH21 -----ZmHOX2a(2)           --------->ZAT6----------->GT1   <---------YAB1 <---------ARR11(3)   gatctcgcaagctgcgcttggcgatggtatcactatttgcaggaggttatattgagcgagtattgttgttctttgtgatctttagggtcatatgattgtg  13285200                                                                            <----------DOF2                                                                           <---------DAG2            <---------At4g35610    <---------YAB1             <---------ANAC46  <---------DAG2              <---------ZAT6                ------>ZmHOX2a(1)                   -----  <----------DOF2--------->YAB1 <---------YAB1  <---------RVE1(1)        ------->TEIL           <----   agccctttatattgagctattgtgatgcaagagtgttattgttctatgtgatattttggttcctgtgtgaatgtgaaccttttctatcaagtttgtggat  13285300                          <-------GAMYB                      ------------>AtMYB77                     ------->GAMYB                 <---------YAB1                          <---------ANAC46               <---------ICU4 ---->GLK1(1) <---------YAB1 <-----------------------TaNAC69(2)<----------DOF2   --------->GLK1(2)  < -----GLK1(1)<---------ARR11(3)                  <---------AHL20(2)             <---------GLK1(2)   -   ttcttcaaatttcaagattataacagacagttacgaagaaacacaactcattttatgttttgtgtcttttggcaaaactccaaattctgaacattgctct  13285400                                                                                                   <-                                                                                                   --                                                                                               ------                                                                                       <xxxxxxxxxxxxx                                                                                       <xxxxxxxxxxxxx                                                                                       <xxxxxxxxxxxxx                                                                                      <xxxxxxxxxxxxxx                                                                                      <xxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                                   <xxxxxxxxxxxxxxxxx                                                                                   <xxxxxxxxxxxxxxxxx                                                                                   <xxxxxxxxxxxxxxxxx                                                                               <xxxxxxxxxxxxxxxxxxxxx                                                                               <xxxxxxxxxxxxxxxxxxxxx                                                                              --------->YAB1   ------                                                                             <xxxxxxxxxxxxxxxxxxxxxxx                                                                             <xxxxxxxxxxxxxxxxxxxxxxx                                                                             <xxxxxxxxxxxxxxxxxxxxxxx                                                                             <xxxxxxxxxxxxxxxxxxxxxxx                                                                             <xxxxxxxxxxxxxxxxxxxxxxx                                                                            <xxxxxxxxxxxxxxxxxxxxxxxx                                                                            <xxxxxxxxxxxxxxxxxxxxxxxx                                                                            <xxxxxxxxxxxxxxxxxxxxxxxx                                                                            <xxxxxxxxxxxxxxxxxxxxxxxx                                                                            <xxxxxxxxxxxxxxxxxxxxxxxx                                                                            <-----------ARR10------>MYB83                                                                            --------->GLK1(2)--------                                                                            <xxxxxxxxxxxxxxxxxxxxxxxx                                                                            <xxxxxxxxxxxxxxxxxxxxxxxx                                                                            <xxxxxxxxxxxxxxxxxxxxxxxx                                                                            <xxxxxxxxxxxxxxxxxxxxxxxx                                                                            <xxxxxxxxxxxxxxxxxxxxxxxx                                                                           <xxxxxxxxxxxxxxxxxxxxxxxxx                                                                           <xxxxxxxxxxxxxxxxxxxxxxxxx                                                                           <xxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                           <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                           <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                          <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                         <xxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                                                         <xxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                         <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                         <xxxxxxxxxxxxxxxxsmallRNA(si3)                                                                         <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                         <xxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                         <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                         <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                         <xxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                        <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                        <xxxxxxxxxxxxxxxxsmallRNA(s)                                                              <---------ALFIN1<xxxxxxxxxxxxxxxxxxxxxx                                                             <xxxxxxxxxxxxxxxxsmallRNA(s)    ------>MYB46(1)                                                            --------->ANAC58<xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    --------                                                       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  ---------                                                       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --------->AtMYB61                                                      <xxxxxxxxxxxxxxxxxsmallRNA(se3) <xxxxxxxxxxxxxx                                                    <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<---------MYB59                                                    <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxx                                                    <xxxxxxxxxxxxxxxsmallRNA(le3) <xxxxxxxxxxxxxxxxxx                                                    <xxxxxxxxxxxxxxxsmallRNA(se3) <xxxxxxxxxxxxxxxxxsmallRNA(si3)                                                   <xxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxx                                                   <xxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxx                                                   <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxx                                                   <xxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxx                                                   <xxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxx                                                   <xxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxx                                                  <xxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxx                                                  <---------LBD16--------->MYB46(3)--------->ZAT6 ---                                                  <xxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxxx                                                  <xxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxx                                           <xxxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxxxxx                                          --------->GLK1(2) --------->ANAC58<xxxxxxxxxxxxxxxxxxxxxxxx                                       <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxx                                       <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxx                                       <xxxxxxxxxxxxxxxxxxsmallRNA(se3) <xxxxxxxxxxxxxxxxsmallRNA(se3)                                      --------->HSFB2a(2)  <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxx                                      <---------HSFB2a(2)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) ------                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)<xxxxxxxxxxxxxxxxsmallRNA(fl3)                                   <xxxxxxxxxxxxxxxxsmallRNA(i) --------->ANAC58<xxxxxxxxxxxxxxxxxxxx                                  <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)<xxxxxxxxxxxxxxxxxsmallRNA(se3)                                  <xxxxxxxxxxxxxxxxxxxxsmallRNA(l2)    <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                                  <xxxxxxxxxxxxxxxxxxxsmallRNA(l2)    <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                                 <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                        --------->ATHB12 <xxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             ----------->GT1     <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)            --------->DAG2       <---------SPL7  <---------LBD16--------->ANAC58<xxxxxxxxxxxxxxxxxxxx           ---------->DOF2      <---------ANAC58 <xxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxx      <---------------AGL15     <---------ANAC58 <xxxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxx ---------ARR11(3) --------->AHL20(2) --------->LBD16<xxxxxxxxxxxxxxxxxxxsmallRNA(s2)<xxxxxxxxxxxxxxx -------->ARR11(3) <---------AHL20(2)<---------ANAC46<---------PCF5---------->DOF2<xxxxxxxxxxxxxxxxxx   aaaatctaatataaaaagtaaaaaaatgaatggggcgttccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaacg  13285500   *TSS<-----------TBP --------ALFIN1 --------->RAV1(1) ->GAMYB xxxsmallRNA(i) xxxsmallRNA(si3) xxxsmallRNA(se3) xxxsmallRNA(se3) xxxsmallRNA(si3) xxxsmallRNA(fl3) xxxsmallRNA(se3) xxxsmallRNA(si3) xxxsmallRNA(fl3) xxxsmallRNA(si3) xxxsmallRNA(le3) --->ANAC58 xxxsmallRNA(fl3) xxxsmallRNA(le3) xxxsmallRNA(si3) xxsmallRNA(si3) xxxsmallRNA(se3) xsmallRNA(se3) xxxsmallRNA(si3) xxsmallRNA(se3) xsmallRNA(si3) xxsmallRNA(si3) -->DOF2 xxxsmallRNA(se3) xxxsmallRNA(fl3) xxxsmallRNA(le3) xsmallRNA(le3) xxsmallRNA(fl3) xxsmallRNA(fl3) xxsmallRNA(se3) xxsmallRNA(l2) ->MYB52(1) >MYB55(1) xxsmallRNA(i) xxxsmallRNA(i2) xxxsmallRNA(fl3) xsmallRNA(si3) xxxsmallRNA(si3) xxxsmallRNA(i2) xxxsmallRNA(se3) xxxsmallRNA(se3) xxxsmallRNA(se3) xxsmallRNA(fl3) ------>RAP2.3(3) xxxsmallRNA(si3) xxsmallRNA(se3) xsmallRNA(si3)                                                                                  ---- xxsmallRNA(le3)                                                                               ------ xxxsmallRNA(fl3)                                                                            -------- xxxsmallRNA(si3)                             <---------AHL20(2)                            --------- xxxsmallRNA(s)                               --------->AHL20(1)                            --------- --->ANAC58                                  <---------AHL20(2)                     <---------RVE1(1) xxsmallRNA(le3)                          <---------AHL20(2)                        <---------CCA1(1) xxxsmallRNA(fl3)             ------------>CBF--------->AHL20(2)                   <---------ARR11(3) xxxsmallRNA(se3)        --------->AHL20(2)  --------->AHL20(2)                    <---------AHL20(1) xxsmallRNA(si3)       <----------DOF2   --------->AHL20(2)            <---------ZAT14      --------- xxxsmallRNA(se3) <---------ANAC58   ------->TEIL                      --------->ZAT14    <---------- xxxsmallRNA(si3) <---------ANAC58 <<<<<<<<<EIN3                    ----------->GT1--------->ARR11(3)   cccacattgatatatagtttgctagcttttaatacaatgtatattaaataatttagttttgtgatataaacagtaaacagaacaagatattttcacccaa  13285600                                                                                       --------------                                                                                    <-----------GT1                                                                                    --------->YAB1 ------->GT1                                                                     --------->WOX13(1) ---->DOF2              --------->YAB1                                  <---------MYB52(1) ->MYB46(3)          ================================================================================ >ANAC46             <---------------AGL15                   ----------->GT1   --------->DOF5.7(2) >ANAC58        <---------MYB46(3)               --------->AHL20(2)    --------->TOE2(3)    --------- >ANAC58      <---------MYB52(1)             ----------->GT1 --------->TOE2(3) <---------MYB52(1) <-- -GT1      <---------TOE1(2)----------->GT1---------->DOF2  ----------->GT1   --------->TOE2(3)   ---   agttaaaaaatccaacgtttgttcaaaaataagaaaaaaactatccaaagttaaattatcaaatgttaaaaatcgttagacgttaatcacaatataaagg  13285700  <----------DOF2                                                                          --------->MYB52(2) ->AGL15                                                                                   ---------- ==MADS_MADS                                            <---------HSFB2a(2)              <--------P ->DOF2                                       --------->AHL20(2)           --------->AHL20(2)    <<<< -------GLK1(1)                             --------->AHL20(2)   ---------->DOF2       <---------ZAT6 ------>GLK1(1)                            --------->YAB1    --------->At4g35610      <---------TOE2(3)   aactcttttttttttttttgagttaagaaacacttagttgggccataaaaatataggtctagtagatgaaaggcccataaaatcaactagggttagttct  13285800              <------NtERF2              ------>NtERF2              --------->LBD16             <---------ANAC46             ----------->RAV1(1)             --------->RAP2.3(3)             --------->DEAR3(1)             --------->RAP2.6(2)             --------->RAP2.3(2)             --------->RRTF1(2)            --------->DEAR4(2)                  <---------ARR14(2)            --------->ORA47(2)               --------->DEAR3(1)            --------->RRTF1(1)             --------->MYB52(1)            --------->ATERF1(1)           <---------ALFIN1            <------NtERF2                 --------->AtMYB61            --------->RAP2.3(1)           --------->DEAR3(1)           <---------ATERF1(1)       <-----------TGA1                                              <-  <---------YAB1                    --------->ANAC46                                         <------- <-----------TBP                  *TSS   --------->MYB46(3)                               <<<<<<<<<NAM ->ARR10 --------->ZAT18 <-------TEIL<-----------HVH21   --------->RAP2.6(3)  --------------->AtSPL8 <<<<<TBF1<---------DEAR3(1)   ------>ZmHOX2a(1)--------->ARR14(2)            <---------------AtSPL8   tcttcttatagagcgccgcatataagcttcatccttctccgtcaccaccggctctgtatttcggcatttgtggagagaagaaggtactctcatccctttc  13285900       --------->YAB1                          --------->At4g35610       --------->TOE2(3)                       <---------At4g35610<------ZmHOX2a(2)    <---------CCA1(2)                ----------->GT1             --------->ARR11(3)              <--- ---------DOF2   <---------DAG2----------->HVH21                 <---------ARR11(3)              ---- ---DOF2         <----------DOF2   ---------->DOF2         <----------DOF2                       <---   tctttcttatcttaatctccttttttaaaatttgtgacaaagtaaaatgagctaatctcgtctttaagatcatatgtcaaaactgaatttgagttttgat  13286000  Previous    Next  AGI:  At4g26220.1    Description:  caffeoyl-CoA 3-O-methyltransferase, putative. Identical to Probable caffeoyl-CoA O-methyltransferase At4g26220 [Arabidopsis Thaliana] (GB:Q9C5D7;GB:Q8LBF3;GB:Q9STR2); similar to caffeoyl-CoA 3-O-methyltransferase, putative [Arabidopsis thaliana] (TAIR:AT4G34050.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN83622.1); contains InterPro domain O-methyltransferase, family 3; (InterPro:IPR002935) Range:  from: 13283585    to: 13285332    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g26225.1    Description:  pre-tRNA. tRNA-Pro (anticodon: TGG) Range:  from: 13285432    to: 13285503    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g26230.1    Description:  60S ribosomal protein L31 (RPL31B). Identical to 60S ribosomal protein L31-2 (RPL31B) [Arabidopsis Thaliana] (GB:Q9STR1); similar to 60S ribosomal protein L31 (RPL31C) [Arabidopsis thaliana] (TAIR:AT5G56710.1); similar to 60S ribosomal protein L31 (GB:P46290); contains InterPro domain Ribosomal protein L31e; (InterPro:IPR000054) Range:  from: 13285834    to: 13286800    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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