Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                  <---------ATHB12               ------>MYB83                                     <------ZmHOX2a(2)               ------>MYB46(1)                                 --------->AGP1              --------->WOX13(1)                               --------->ARR14(2)       --------->TOE1(3)          <-----------GT1         --------->YAB1  --------->MYB46(3)         <---------ATHB12   ----------->GT1--------->WOX13(1) --------->YAB1            <---------ARR14(2)       --------->TOE2(3) ---------->RAV1(1)  --------->YAB1  <---------ICU4            --------->ARR11(3)     ------->TEIL   ctcaacagttatataccaatctatcatactcttcaagaattataacttatgaacaaacattgttagatccagcattccaattactctgaaccttacaata  13108400                                                            <---------ARR11(3)                                                       --------->YAB1                                                     --------->ANAC58                                                 --------->ANAC58                                                 --------->ANAC58                                               ---------->DOF2                                           --------->ZAT2   --------->ARR11(3)              <-------TEIL                 <---------At4g35610 <---------DAG2     >>>>>>>>>RAP2.2        --------->At4g35610     <-----------GT1 <----------DOF2 <---------CCA1(2)   ---------->DOF2 --------->ANAC58                     --------->ZAT6   ctactttataaacaagttcatatctaaaatcgtaggcctaaaaggagctgaaagcaagcataaatcttttcacatttcaatgcaattgtttctcactaca  13108500              ------>ZmHOX2a(2)             <------ZmHOX2a(2)            <---------ARR14(3)            <---------ARR11(3)            --------->ARR11(3)            <---------ARR14(2)            --------->ARR14(2)           <---------HSFB2a(1)                         --------------->AGL15           --------->HSFB2a(1)                         <---------------AGL15           --------->HSFC1(2)                        --------->ZAT2      <-------TEIL                                   --------->At4g35610     --------->ARR14(1)                         --------->ZAT6    <---------GLK1(2)       <-----------GT1  <---------TCP20    --------->ARR11(1)      ------->TEIL     --------->ARR14(2)  ----------->ARR10      ----------->GT1----------->RAV1(2)              ---------->DOF2       ------   agcttagattcgaagatccctagagaaatgtaactagcttaaacctggttccactagctgaaaatagaaggaaatgaaagagagcatgactcacaaacct  13108600                --------->GLK1(1)                <---------GLK1(1)               --------->ARR14(2)               <-----------ARR10               <---------ARR14(2)               --------->ARR11(3)               <---------ARR11(3)                                             <---------LBD16               <---------ARR14(3)                                       <---------ICU4               <---------AGP1                                           <---------AHL20(2)              <---------CCA1(2)                       <------ZmHOX2a(1) --------->AHL20(2)     <---------ARR11(3)                               ==================HOX2a_HOX2a     --------->ARR11(3)      --------->KAN4(2)       <----------ID1 <---------YAB1   --------->DAG2------>ZmHOX2a(2)                ---------->DOF2<------ZmHOX2a(2) ---------->DOF2<------ZmHOX2a(2)            <---------YAB1     --------->ARR11(3) --->TOE2(3)  <---------At4g35610         --------->GLK1(2)     <---------ARR11(3)   ttgaaaaggtatttgcagatctctctgcgattgttctctgagataatctgataaaaggacgaacaagatcacaattaatactcggataattccttccatt  13108700                                                                              <---------At4g35610                                                                        <---------At4g35610                                                                   <-------GAMYB                                                                   <---------ANAC58                                                                   <---------ANAC58                                                                  <---------MYB46(3)                                                                  --------->MYB52(2)                                                                  --------->MYB55(2)                                                                  <------MYB46(1)           <---------ANAC55(2)                                    <------MYB83--------->At4g35610           ----------->GT1                                       <---------AtMYB61 ---------->DOF2   ----------->GT1                   --------->At4g35610        <--------P<----------DOF2   acattcagtaaatatgtaaatttagagaaacagagtagaagcagagtatgtgtataccatcgtcttgttggttgagctttcgctgcaaagaggcactgag  13108800                                                                                              -------                                                                                              <------                                                                                              -------                                                                                              -------                                                                                              <------                                                                                             --------                                                                                             <-------                                                                                           <--------ATHB1                                                                                           -------->HAHB4                                                            --------->ARR14(2)             --------->ATHB51                                                            <---------ARR14(2)             <--------HAHB4                                                         --------->ANAC55(2)               <---------ICU4                                                         <---------TOE2(3)                 --------->YAB1                                    *TSS                 <---------ANAC55(2)              --------->AHL20(2)                                  ---------->DOF2        <---------ANAC46    <---------At4g35610                             ----------->GT1            <---------LBD16 <------------CBF  --------->ICU4                             --------->LBD16           <-----------GT1 --------->ATHB12   <---------ATHB51                            <---------ANAC46       <---------AHL20(1) <---------YAB1      <---------YAB1                           <---------At4g35610     --------->AHL20(1)<-----------TBP      <---------ATHB12    ---------->DOF2        <---------LBD16      --------->AHL20(2)  <----------DOF2 --------->GLK1(2)   cttgagcaaaggggagcaatagggttttctgcggataaaagacgattagattatatattacggatttgggcttttattgggctgataatctaataattat  13108900       --------->ZAT2       <---------At4g35610         <-------GAMYB    ---------->DOF2               <---------MYB46(3) -->AHL20(2)                <---------MYB52(1) ---AHL20(2)               <-----------HVH21 -->ATHB12              <---------LBD16                                                            -- -->ATHB51        <---------AtLEC2----------->GT1         <---------LBD16                          -- ---ICU4      <----------DOF2 --------->MYB52(2)        <---------GLK1(1)                        ---- ->ICU4--------->At4g35610----------->GT1   --------->ARR14(2)                          <---------DOF5.7(2) --YAB1<---------ZAT2 <---------SPL7        <---------ARR14(2) --------->GLK1(1)        --------->MYB52(1)   ttgctacaaagctggcctttacatggtccggttagatggttaaccggttccatattagatttcggagtcccatagtgaattttcttctgttaacgggaga  13109000                                        ------>MYB83                                        ------>MYB46(1)                                -------->HAHB4                                <---------ICU4        --------->YAB1           <---------HSFB2a(2)  --------->YAB1    <---------AHL20(2)      ----------->HVH21        --------->ICU4    <---------AHL20(2)    --------->At4g35610      --------->YAB1      --------->AHL20(2)                              <--- ------->ATHB12           --------->ANAC55(2)--------->AHL20(2)         <---------GLK1(2)       ----- ------->YAB1             --------->ANAC46  <---------ATHB12    <---------YAB1                  <---- ----->GLK1(2)    --------->AHL20(2)   ----------->RAV1(1)    <------ZmHOX2a(1)          --------->MYB52(1)   atcataggctgacctagaaaaaaaattcacataataatgaccaacaatgaattaaatcatagtaggatgattcaaattcttgttcttggactaacagatt  13109100                                                              <---------ARR11(3)                                                              --------->ARR11(3)                                                          <---------AHL20(2)        <---------ATHB12                                                          --------->AHL20(2)  ----------->GT1      --------->MYB46(3)                             <---------AHL20(2)     <--------P      <---------MYB55(2)            ------->TEIL     --------->AHL20(2)   <------MYB46(1) ------AHL20(2)                  <---------YAB1   <---------ARR11(3)      <------MYB83--------->WOX13(1) ---->AHL20(2)                --------->ICU4      --------->ARR11(3)     --------->MYB59      <------ -----AHL20(2)                <---------ATHB51  <---------TOE2(3)        --------->MYB46(2)  --------   aatttgcaaccactaaaacaccatagttggaaattatgaatttgagaattgagattttatttaaaatcttgtagtttggtaagtgaatcattcaattaca  13109200                  ------->TEIL           <---------GLK1(1)          <---------ARR14(2)             <---------TOE2(3)          --------->ARR14(2)             <---------TOE1(3)         <------ZmHOX2a(1)   ------>ZmHOX2a(2)                <---------YAB1                        <      <---------HSFB2a(2)  --------->ARR11(3)   <---------RAP2.3(1)                          --------      --------->HSFB2a(2)  <---------ARR11(3)  <---------RAP2.3(3)                          --------- ---At5g28300    <---------CCA1(2) <---------ATHB12------>NtERF2               <-----------GT1      - ->YAB1  ===========================HOX2a_HOX2a<---------DEAR3(1)           <---------ICU4 <---------ATHB12   gtcacattctaggatttgtgtatctatatgatcttcactcattaaggtttcggcgctagatttcatgctaggcttaaatttttactcaatccaatcttac  13109300  Previous    Next  AGI:  At4g25740.1    Description:  40S ribosomal protein S10 (RPS10A). Identical to 40S ribosomal protein S10-1 (RPS10A) [Arabidopsis Thaliana] (GB:Q9SW09); similar to 40S ribosomal protein S10 (RPS10C) [Arabidopsis thaliana] (TAIR:AT5G52650.1); similar to 40S ribosomal protein S10-like [Solanum tuberosum] (GB:ABB55398.1); contains InterPro domain Plectin/S10, N-terminal (InterPro:IPR005326) Range:  from: 13107259    to: 13108836    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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