Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                        --------->AtMYB61                                                     --------->MYB46(3)                                                   --------->DEAR3(1)                                                   --------->AtMYB61                                                   <---------ALFIN1                                                  --------->MYB46(3)                                                 ------->TEIL                                                --------->ANAC46                                               --------->MYB46(3)                                              <---------ALFIN1                           ---------->DOF2                                              --------->ANAC58                         <---------AHL20(2)                                              --------->ANAC46                      ------>MYB83                                              --------->ANAC58                      ------>MYB46(1)                                            <---------ALFIN1                      <---------MYB59    --------->GLK1(2)                    <---------ZAT18------>MYB46(1)        --------->ARR14(2) -------->YAB1---------->DOF2            --------->ZAT18------>MYB83--------->MYB46(3) --------->AHL20(2) ------>MYB52(1)                         --------->PCF2----------->RAV1(1)     <---------ARR14(2)  --   taacagaatcaataaccaaagcgttctggctcatagcctcttgtgcccacgcaccaccaacatttggagacccatcgtgcagaaccaaattaaaagcact  13106400                                                             <-----------TGA1                                                            <---------ANAC58                                                            <---------ANAC46                                                            <---------ANAC58                         --------->ARR11(3)             <---------ANAC58                         <---------ARR11(3)           <---------ARR11(3)                      <---------WOX13(1)              --------->ARR11(3)                     <---------ANAC46          ------>ZmHOX2a(1)                     <---------ANAC58         <---------ANAC58                             --------->ARR14(2)                     <---------ANAC58  --------->ANAC46 <---------ANAC58                   --------->GLK1(2)            --------->REM1(1)        --------->ZAT6  <---------GLK1(1)                     <---------ARR14(2)        <---------At4g35610------>ZmHOX2a(2)  <---------ANAC58                 --------->ANAC58        --------->At4g35610===========================HOX2a_HOX2a              --------->ANAC58<----- ------->ZAT6<-----------HVH21     <-----------GT1   --------->GLK1(1)         <---------MYB52(2)   aacaccatgctgctccatcacttgcttgatcttcgatttacactcagtccttgtgatatcttgcgtcatagtaacacagccacgaacagggagaatcggg  13106500                                                                         <---------ANAC46                                                                         --------->DEAR3(1)                                                                        <------NtERF2                                                                        --------->ATERF1(1)                                                                        --------->RAP2.3(1)                                                                        --------->RRTF1(1)                                                                       <---------RAP2.6(1)                                                                       <---------RRTF1(1)                                                                       <---------ATERF1(1)                                                                       <---------DEAR4(2)                                                                       ------>NtERF2                                                                       <---------DEAR3(2)                                                                       <---------ERF1                                                                       <---------RAP2.3(1)                                                                      <---------ATERF1(2)                                                                      <---------RAP2.3(3)                                                                      <---------RAP2.3(2)                                                                      --------->ATERF1(2)                                   <----------DOF2                    <---------DEAR3(1)                                  --------->HSFB2a(1)                 --------->ALFIN1                                  --------->HSFC1(2)                  <---------RAP2.6(2)                                  <---------HSFC1(2)                  <---------RRTF1(2)                                  <---------HSFB2a(1)        ------->GAMYB                            <---------ANAC46                <---------MYB55(2)                           <------NtERF2--------->ETT(2)--------->MYB46(3) <------NtERF2                          ------>NtERF2--------->HSFB2a(2)  <---------MYB111(2)                          <---------RAP2.6(3)    <---------ANAC46     --------->ATERF1(1)       <----                         ----------->HVH21     ------>NtERF2--------->MYB46(3)   <------ZmHOX2a(2)  <                         --------->DEAR3(1)   --------->DEAR3(1)      <---------RRTF1(3)        <----                         <---------ATERF1(2) --------->ATERF1(1)     <---------ABI4(1)  --------->ANAC58                         --------->ATERF1(2) <------NtERF2 ------>MYB83<---------ORA47(2)       -----                        --------->ATERF1(1)  --------->RAP2.3(1)    --------->ALFIN1  --------->MYB52(1)                        --------->DEAR3(2)  ------>NtERF2  ------>MYB46(1)------>NtERF2--------->RAP2.6(3)   <------ZmHOX2a(2)   ------>NtERF2   <---------HSFB2a(2) -------->P--------->ATERF1(1)--------->ANAC58  --------->ARR11(3)   <---------At4g35610  <---------RAP2.3(1) <-----------RAV1(2)--------->HSFB2a(2)  <---------ARR11(3)   <---------ATERF1(1)  <---------ATERF1(1)----------->RAV1(2) <---------HSFB2a(2) -----ID1              --------->At4g35610 <---------DEAR3(1)--------->AtMYB61 --------->GLK1(1)-----   acaagatcgataccgagaacgaggctgccgacgggaactttctcgacggcgacttgcatccaaccaccaggggcggcgcagagatcgagaacggcatgag  13106600                                                                       ------>ZmHOX2a(1)                           --------->ZAT2                             <---------ANAC58                           <---------ZAT2                         <-------MYC3                           <---------At4g35610                    ------->MYC2                           --------->At4g35610              --------->ARR14(2)                       --------->ALFIN1            <---------HSFB2a(2)<---------ANAC58                       --------->ATERF1(1)         --------->HSFB2a(2)--------->TOE2(3)                       <------NtERF2           <---------ZAT2     <-------MYC2  --------->ALFIN1   <---------ANAC46          --------->At4g35610------->MYC3 -----At4g35610      <---------ANAC58       <------ZmHOX2a(1)    --------->ANAC46 ---------ANAC46     <---------ANAC58<---------ANAC58       <---------ARR14(2) -----ZAT2      <---------ANAC58     <---------ANAC58   --------->ANAC58 ---->At4g35610 <---------ANAC58    --------->HSFC1(2)  --------->ANAC58 ---->ZAT2   <---------ZAT14        <---------HSFC1(2)--------->MYB52(1)   ctgagtggagaagagagtacttggcgtcgagctgaagaagcttgtaggaagctcgagaacggaatccacgttccttagcgagacgatagtacttatccaa  13106700                                                                        <------NtERF2                                                                     <------NtERF2                                                                --------->ANAC58               <---------MYB59                                  --------->ANAC46               <---------DAG2                                   --------->ANAC58           ----------->HVH21                                   <---------LBD16           --------->WRKY38(1)                                --------->MYB52(1)           --------->WRKY12                                --------->At4g35610         <----------DOF2                     <---------ANAC58<---------ZAT14                      <--    <----------DOF2                          <---------ANAC58--------->ZAT14                <------ZmHOX2a(1)   <---------ANAC58          <---------CCA1(1)             <---------At4g35610           *TSS     ---   <---------ANAC58          <---------RVE1(1)             --------->ZAT2             <---------LBD16   acgatgctttcctttgaccttacccatggcgatattttgctagggtttcgttctggttctcagcacacggaggcagagaaatagcaattggggaggaaga  13106800                              <----------DOF2                            --------->LBD16      --------->At4g35610   ------>NtERF2      --------->ZAT2    <-----------GT1                                                           <--      <---------ZAT2   --------->KAN4(2)                      <---------GLK1(1)             <--------      <---------At4g35610 <---------LBD16                     --------->GLK1(1)          <----------DOF2 -------HSFC1(2) <---------TOE1(3)                          <------ZmHOX2a(1)       --------->ANAC58 ------>HSFC1(2) <---------TOE2(3) <---------ZAT6 ----------->HVH21                 --------->ANAC58   agctactcagctagggtttagggtttattccgccttagtgtaaacccttcgtctcacagagaggatttcaaatttctattttggacaggccctttaacct  13106900                                                                                              -------                                                                                           --------->ANAC46                               <---------YAB1      <---------DAG2             <---------ARR11(3)  <---------YAB1              <---------AHL20(1)   <----------DOF2            --------->ARR11(3)<---- --------DOF2           <----------DOF2     --------->At4g35610      --------->ANAC46      --------->ANAC58 ---GT1           --------->ANAC46    ---------->DOF2         --------->MYB46(3)           --------->ANAC58   ctttctgatgggcttcttaaacggccctttaatatgtttagaaagaagctcaacttttttgtcaacaatctaagaaacaagatgttgtattggaagcaac  13107000                                                                                ---------->DOF2          <---------TOE2(3)                                                 <---------DOF5.7(2)  --------->ANAC58                                                          ---------->DOF2  --------->ANAC46                            --------->HSFB2a(2)         --------->DOF5.7(2)  --------->ANAC58                  --------->ZAT6                       --------->TOE2(3) ---->RAV1(1)            <---------KAN4(1)    <---------HSFB2a(2)        --------->TOE1(3) -----ALFIN1             --------->KAN4(1) --------->ARR11(3)          <---------TOE2(3)           --   acagacgaaattgaggtatcaagtggattgttcttggaacactaacatctagacgaagttggatttattgttcaacgttaaagaaagagttgcgctatgt  13107100                    <---------ARR14(2)                    --------->ARR14(2)                    <---------ARR11(3)                    --------->ARR11(3)                   <------ZmHOX2a(1)           <---------ANAC58           <---------ANAC58           <---------ANAC46         --------->ARR11(3)     --------->AHL20(2)                                                                       <------     <---------AHL20(2)                                <------ZmHOX2a(2)                      -------     <---------AHL20(1)                        --------->ARR11(3)                        <----------DOF2 --------->GT1   <---------TOE2(3)         ---------->DOF2                        <----------DOF2   ccgataaaaaatttcttgtaaggatattgttcaaagattagactagaaagaaattggatcaaattccaatttagcattgaatcccttttgtcttttgtag  13107200                                                                         <------MYB46(1)         <---------GLK1(2)           --------->AHL20(1)                 --------->MYB59           ---         <---------ARR14(2)          <---------ARR11(3)              --------->ARR14(2)         -----         --------->ARR14(2)          --------->AHL20(2)              <---------GLK1(2)      <-------- ---HSFB2a(2)                        <---------AHL20(1)              <---------ARR14(2)     --------- -->HSFB2a(2)           --------->GLK1(1)<-----------GT1  ---------->DOF2<------MYB83      <---------   aagttaagacgaattctctaatacacatttccacttcaatattttaccacactagattactaaagaagacagatttggtctccctcttcttgttcttaaa  13107300  Previous    Next  AGI:  At4g25730.1    Description:  FtsJ-like methyltransferase family protein. similar to FtsJ-like methyltransferase family protein [Arabidopsis thaliana] (TAIR:AT5G01230.1); similar to Os05g0567400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056350.1); similar to FtsJ-like methyltransferase family protein [Musa acuminata] (GB:ABF69946.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47601.1); contains InterPro domain Ribosomal RNA methyltransferase J (InterPro:IPR015507); contains InterPro domain Ribosomal RNA methyltransferase RrmJ/FtsJ (InterPro:IPR002877); contains InterPro domain Spb1, C-terminal; (InterPro:IPR012920) Range:  from: 13102688    to: 13106789    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g25740.1    Description:  40S ribosomal protein S10 (RPS10A). Identical to 40S ribosomal protein S10-1 (RPS10A) [Arabidopsis Thaliana] (GB:Q9SW09); similar to 40S ribosomal protein S10 (RPS10C) [Arabidopsis thaliana] (TAIR:AT5G52650.1); similar to 40S ribosomal protein S10-like [Solanum tuberosum] (GB:ABB55398.1); contains InterPro domain Plectin/S10, N-terminal (InterPro:IPR005326) Range:  from: 13107259    to: 13108836    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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