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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<-----------
HVH21
--------->
ALFIN1
------->
MYC4
<-------
MYC4
<-------
MYC2
------->
PIF5
<-------
MYC3
------->
MYC3
------->
MYC2
<-------
PIF5
<---------
ANAC46
<--------
ABF1
--------->
O2
--------->
TGA1a
<---------
TGA1a
<---------
ANAC55(2)
<---------
O2
------>
NtERF2
<---------
ALFIN1
<---------
RAP2.3(1)
--------->
PCF2
<---------
ATERF1(1)
<---------
ZAT2
<-----------------
PIF3(1)
--------->
ZAT2
------>
NtERF2
--------->
ANAC58
--------->
ATERF1(1)
--------->
HSFB2a(2)
--------->
ANAC58
<------
NtERF2
<---------
HSFB2a(2)
---------
--------->
DREB2C(2)
--------->
ANAC46
--------->
ANAC58
--------->
ARR14(2)
--------->
DEAR3(1)
--------->
RAP2.3(1)
--------->
ANAC58
<---------
ARR14(2)
<---------
ATERF1(2)
--------->
bZIP60(1)
--------->
WOX13(1)
<---------
WRKY12
---------
--------->
ATERF1(2)
<---------
bZIP60(1)
--------->
GLK1(1)
<-----------
HVH21
---------
<---------
LBD16
--------->
ATERF1(1)
--------->
ANAC58
----------->
GT1
--------->
ARR14(2)
<---------
ALFIN1
----------->
RAV1(2)
--------->
ANAC58
<------
ZmHOX2a(1)
<---------
ARR14(2)
tagctccaccggcaagcttggagcctggcgccacgtgtgagaccggcaatccagaacccagacactagaggaggtcaaatggtggtatctggttacgcca
13099100
--------->
LBD16
--------->
DEAR3(1)
--------->
DEAR3(1)
--------->
ANAC46
------->
GAMYB
<------------
AtMYB77
--------->
MYB46(3)
--------->
DEAR3(2)
<---------
MYB55(2)
------>
MYB46(1)
-------->
P
------>
MYB83
--------->
MYB55(1)
--------->
MYB52(1)
<---------
WRKY18(1)
--------->
MYB46(3)
---------->
DOF2
--------->
ANAC58
<---------
ARR11(3)
------>
NtERF2
<---------
WRKY12
--------->
ANAC58
--
--------->
ARR11(3)
<------
NtERF2
<---------
WRKY38(1)
<---------
ANAC58
--------->
WRKY12
>
ANAC46
--------->
AtMYB61
--------->
ARR11(3)
<---------
ANAC58
----------->
HVH21
>
ANAC58
--------->
MYB46(3)
<---------
ARR11(3)
--------->
GLK1(2)
--------->
O2
==
>
ANAC58
--------->
DEAR3(2)
<---------
CCA1(2)
<---------
GLK1(2)
--------->
MYB46(3)
atgttatagatattagaaccaaccgccgcgaggctatatctctgagtcaaaggagaatggggaattgggattcttgccaagacataaccacttgacctgt
13099200
<------
NtERF2
--------->
LBD16
------>
NtERF2
<---------
ATERF1(2)
--------->
HSFB2a(2)
<---------
LBD16
<---------
HSFB2a(2)
<---------
RAP2.6(2)
--------->
ARR14(2)
<---------
MYB46(3)
--------->
ANAC46
<---------
YAB1
--------->
LBD16
<-----------
GT1
------>
ZmHOX2a(2)
<---------
YAB1
<------
ZmHOX2a(2)
<---------
ICU4
<-------
GAMYB
<---------
ARR14(2)
================================
HOX2a_HOX2a
===============================
HOX2a_HOX2a
------>
ZmHOX2a(1)
<---------
ARR14(2)
<---------
YAB1
===================================
HOX2a_HOX2a
<---------
MYB52(1)
------>
ZmHOX2a(1)
--------->
MYB111(2)
--------->
ATERF1(2)
<---------
RAP2.6(3)
==================================
HOX2a_HOX2a
--------->
ZAT2
<---------
ALFIN1
--------->
MYB55(2)
<---------
LBD16
<---------
ZAT2
<---------
ANAC55(2)
---->
ZmHOX2a(1)
<--------
P
--------->
ARR14(2)
<---------
STY1(2)
--------->
ANAC55(2)
===================================
HOX2a_HOX2a
--------->
STY1(2)
--------->
YAB1
cctcctccttattactactggttgttgttcgatccggtttccggcagagggtgaaccagctagggccgtttttataagaatacatatttatgcacacata
13099300
<---------
O2
<---------
bZIP60(2)
----------->
RAV1(2)
--------->
ZAT18
<------
ZmHOX2a(1)
----------->
HVH21
=============
HOX2a_HOX2a
------>
NtERF2
----------->
HVH21
--------->
ANAC58
------>
NtERF2
<---------
At4g35610
--------->
ANAC58
<---------
ARR11(3)
<---------
At4g35610
---------->
DOF2
--------->
ARR11(3)
--------->
At4g35610
---------->
DOF2
<-----------
RAV1(2)
--------->
SPL7
--------->
At4g35610
--------->
LBD16
---------->
DOF2
---
----------->
RAV1(2)
<---------
MYB59
<---------
LBD16
<------
ZmHOX2a(2)
<-----
gagacgactctccctgcggcccaagagtgacctgaccttgtaaagctccggtgaagccaggagagatcgaaagctcttggagacgagtgagagaatagga
13099400
--------->
YAB1
--------->
GLK1(1)
<---------
ICU4
<---------
ANAC55(2)
------->
MYC2
--------->
ANAC55(2)
------>
NtERF2
------->
MYC3
<---------
HSFB2a(2)
--------->
ETT(2)
<-------
MYC3
--------->
HSFB2a(2)
<---------
ETT(2)
<-------
MYC2
<---------
LBD16
<-----------
RAV1(1)
<---------
ANAC58
--------->
ATHB12
<---------
ARR14(2)
<---------
AHL20(2)
--------->
ICU4
<---------
ATHB12
--------->
ARR14(2)
<<<<<<<<<
TBF1
--------->
YAB1
--------->
SPL7
------>
MYB83
--------->
MYB52(1)
<---------
ALFIN1
<<<<<<<<<
TBF1
-------->
GT1
<---------
ANAC46
------>
MYB46(1)
<---------
ANAC46
------>
NtERF2
<<<<<<<<<
TBF1
-
ZmHOX2a(1)
<---------
ANAC58
<---------
MYB59
----------->
HVH21
--------->
ANAC46
<<<<<<<<<
TBF1
tagtataatattgagacgcgtgcgatgatgaccaataccaaatcatcgggaagtgacggatttgttgtcgacgacaccttcttcttcttcttcttcatgt
13099500
<------
ZmHOX2a(1)
<------
NtERF2
<---------
LBD16
--------->
At4g35610
<---------
At4g35610
<------
NtERF2
--------->
RAP2.3(1)
--------->
ATERF1(1)
<---------
DEAR4(2)
<---------
RRTF1(1)
------>
NtERF2
<---------
RAP2.6(1)
<---------
RAP2.3(1)
<---------
ORA47(2)
<---------
ERF1
<---------
ATERF1(1)
<---------
RAP2.3(2)
<---------
RAP2.6(2)
--------->
AtMYB61
<---------
RRTF1(3)
--------->
MYB46(3)
<---------
RRTF1(2)
------>
MYB83
<---------
RAP2.3(3)
-------->
P
--------->
ATERF1(2)
-----------
--------->
AtMYB61
<---------
ATERF1(2)
<---------
ANAC46
------>
NtERF2
<---------
DEAR3(1)
<---------
ANAC55(2)
--------->
WRKY12
--------->
DEAR3(1)
--------->
ANAC55(2)
--------->
WRKY38(1)
<---------
ABI4(1)
<------
MYB83
<---------
MYB52(1)
------>
MYB46(1)
<---------
LBD16
<------
MYB46(1)
<-------
GAMYB
--------->
WRKY45
--------->
ATERF1(1)
<---------
ANAC55(1)
--------->
O2
----------->
HVH21
<---------
DEAR3(1)
--------->
MYB111(1)
<---------
O2
--------->
LBD16
<----------
DOF2
<---------
ANAC46
--------->
MYB59
<---------
bZIP60(1)
<---------
MYB59
<----------
DOF2
===================
HOX2a_HOX2a
<-----
--------->
bZIP60(1)
--------->
MYB46(3)
<---------
DAG2
------>
ZmHOX2a(2)
<---------
GLK1(2)
------>
NtERF2
<---------
At4g35610
<-----------
GT1
<---------
ARR14(2)
--------->
MYB52(1)
--------->
DEAR3(1)
--------->
At4g35610
<----------
DOF2
--------->
ARR14(2)
----------->
RAV1(1)
<
tcgacgacgtcgttgtctctccgctgaccaacctctccat
ttcttttacttttttctttggggatcggcggcggaaggagacaacagattaggtgttaat
13099600
<--------
<---------
YAB1
<---------
WRKY38(1)
<---------
WRKY12
--------->
WRKY18(1)
<----------
DOF2
<-----------
HVH21
<-----------------
AGL1
<------
MYB83
--------->
YAB1
<---------
MYB52(1)
<------
MYB46(1)
---------
>
GT1
<---------
ZAT18
<-----------
GT1
<-----------
RAV1(1)
<---------
----
YAB1
<---------
DAG2
<---------
DAG2
--------->
ARR11(3)
<---------
---------
MYB46(3)
<----------
DOF2
<---------
ANAC46
<---------
ARR11(3)
<-----------
GT1
attcgttgggccctttatgggccttgatcactttttaactaaaaacgttttgtgtttagtttttttgccgaagatgttggtcaagggtattatactattt
13099700
<---------
ANAC58
<---------
ANAC46
--------->
O2
<---------
ANAC46
--------->
TGA1a
*
TSS
<---------
YAB1
=========================================
MYC_MYB
<------
-------
AGL15
<---------
ANAC58
==================================
bZIP_DOF
--------->
YAB1
------>
AGL15
<---------
bZIP60(2)
<---------
O2
----------->
GT1
<-
--------
AGL2
--------->
ALFIN1
<---------
TGA1a
------->
GAMYB
<----------
--------
AGL3
<---------
REM1(1)
<-----------
HVH21
<----------
DOF2
<------------
CBF
<--
atgggattatgttttgtggtgtggcatttgcagagtgtcagagacgtcgtttgattttgggagagacttttgttaaccgaggggaattgtaatttc
cttt
13099800
-------->
ATHB1
<--------
ATHB1
--------->
YAB1
<---------
GLK1(2)
<---------
TOE1(1)
--------->
ATHB51
--------->
At5g28300
--------->
LBD16
<---------
TOE2(1)
--------->
ATHB12
----------->
GT1
------>
NtERF2
<-------
TEIL
<---------
ICU4
<---------
TOE2(3)
----
DOF2
--------->
CCA1(2)
<---------
ATHB12
<---------
YAB1
--------
LBD16
<---------
SPL7
--------->
ICU4
--------->
ICU4
-
GT1
<---------
GLK1(2)
<---------
YAB1
--------->
WOX13(1)
<---------
ATHB51
-------
At5g28300
<---------
TOE2(3)
------------>
ATHB5
<---------
TOE2(3)
---------
tgccgcgattttggattttcaag
gta
cgaggttttgattctcatcttcaatcattgaagtttgctaaatgctaatgttcagaaattatggtaaattatag
13099900
---------
<--------
<---------
ARR11(3)
<---------
ANAC58
<---------
AHL20(1)
<---------
ANAC58
<---------
ANAC46
<-
--------->
ZAT18
<-----------
RAV1(1)
<---------
ANAC58
<-
--------->
ANAC58
<---------
ATHB12
<---------
At4g35610
<--
--------->
ANAC58
--------->
ANAC58
<---------
At4g35610
<---------
ANAC58
<---------
ICU4
--------->
AHL20(1)
<---------
ANAC58
<----------
DOF2
<---------
--------->
ZAT14
------>
MYB46(1)
------>
MYB83
<-----------
GT1
<---------
ANAC58
<--
<---------
ZAT14
------>
MYB83
--------->
ANAC58
<---------
AHL20(2)
<---------
YAB1
-------
>
YAB1
--------->
MYB46(3)
------>
MYB46(1)
--------->
AHL20(2)
<---------
At4g35610
---
ccagtatacattctaaccattaccaagcgcaatattt
tcataccaagcattgttgctcgatataatttccgctctttgctgatgcttgttttagcttgat
13100000
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AGI:
At4g25710.1
Description:
kelch repeat-containing F-box family protein. Identical to F-box/Kelch-repeat protein At4g25710 [Arabidopsis Thaliana] (GB:Q9SZZ9;GB:Q67YB0); similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT5G51250.1); similar to 117M18_27 [Brassica rapa] (GB:AAZ66946.1); contains InterPro domain Kelch repeat type 1 (InterPro:IPR006652); contains InterPro domain Kelch-type beta propeller (InterPro:IPR015915); contains InterPro domain Kelch repeat type 2 (InterPro:IPR011498); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain Kelch related (InterPro:IPR013089); contains InterPro doma
Range:
from: 13098150
to: 13099540
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At4g25719.1
Description:
other RNA
Range:
from: 13099797
to: 13101026
Orientation: Forward
Links:
TAIR
MIPS
AGI:
At4g25720.1
Description:
glutamine cyclotransferase family protein. similar to Chain A, Unbound Glutaminyl Cyclotransferase From Carica Papaya. (GB:2IWA); similar to glutamine cyclotransferase precursor [Carica papaya] (GB:AAC27745.1); contains InterPro domain Glutamine cyclotransferase (InterPro:IPR007788); contains InterPro domain Nitrous oxide reductase, N-terminal (InterPro:IPR011045)
Range:
from: 13099827
to: 13102587
Orientation: Reverse
Links:
TAIR
MIPS
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when using AthaMap.
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