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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                <-----------HVH21
                               --------->ALFIN1
                              ------->MYC4
                              <-------MYC4
                              <-------MYC2
                              ------->PIF5
                              <-------MYC3
                              ------->MYC3
                              ------->MYC2
                              <-------PIF5
                             <---------ANAC46
                             <--------ABF1
                             --------->O2
                             --------->TGA1a
                             <---------TGA1a
                             <---------ANAC55(2)
                             <---------O2
                            ------>NtERF2
                           <---------ALFIN1
                         <---------RAP2.3(1)
                        --------->PCF2
                      <---------ATERF1(1)
           <---------ZAT2<-----------------PIF3(1)
           --------->ZAT2------>NtERF2
          --------->ANAC58--------->ATERF1(1)  --------->HSFB2a(2)
          --------->ANAC58<------NtERF2        <---------HSFB2a(2)                         ---------
     --------->DREB2C(2)--------->ANAC46    --------->ANAC58                      --------->ARR14(2)
     --------->DEAR3(1)--------->RAP2.3(1)  --------->ANAC58                      <---------ARR14(2)
     <---------ATERF1(2)--------->bZIP60(1)--------->WOX13(1)          <---------WRKY12    ---------
     --------->ATERF1(2)<---------bZIP60(1)--------->GLK1(1)         <-----------HVH21     ---------
    <---------LBD16--------->ATERF1(1)  --------->ANAC58            ----------->GT1     --------->ARR14(2)
  <---------ALFIN1 ----------->RAV1(2)  --------->ANAC58          <------ZmHOX2a(1)     <---------ARR14(2)
 
tagctccaccggcaagcttggagcctggcgccacgtgtgagaccggcaatccagaacccagacactagaggaggtcaaatggtggtatctggttacgcca  13099100
                       --------->LBD16
                      --------->DEAR3(1)
                   --------->DEAR3(1)
                   --------->ANAC46
                   ------->GAMYB
                  <------------AtMYB77
                  --------->MYB46(3)
                  --------->DEAR3(2)
                  <---------MYB55(2)
                 ------>MYB46(1)
                 -------->P
                 ------>MYB83
                --------->MYB55(1)
                --------->MYB52(1)                                                       <---------WRKY18(1)
               --------->MYB46(3)           ---------->DOF2                --------->ANAC58
     <---------ARR11(3)------>NtERF2       <---------WRKY12                --------->ANAC58       --
     --------->ARR11(3)<------NtERF2       <---------WRKY38(1)      <---------ANAC58    --------->WRKY12
>ANAC46        --------->AtMYB61 --------->ARR11(3)                 <---------ANAC58    ----------->HVH21
>ANAC58       --------->MYB46(3) <---------ARR11(3)               --------->GLK1(2)   --------->O2==
>ANAC58       --------->DEAR3(2)<---------CCA1(2)                <---------GLK1(2) --------->MYB46(3)
 
atgttatagatattagaaccaaccgccgcgaggctatatctctgagtcaaaggagaatggggaattgggattcttgccaagacataaccacttgacctgt  13099200
                                          <------NtERF2
                                      --------->LBD16
                                      ------>NtERF2
                                     <---------ATERF1(2)
                                     --------->HSFB2a(2)
                                     <---------LBD16
                                     <---------HSFB2a(2)
                                     <---------RAP2.6(2)
                                  --------->ARR14(2)
                  <---------MYB46(3) --------->ANAC46
          <---------YAB1       --------->LBD16
        <-----------GT1      ------>ZmHOX2a(2)
       <---------YAB1       <------ZmHOX2a(2)
     <---------ICU4<-------GAMYB  <---------ARR14(2)
    ================================HOX2a_HOX2a
    ===============================HOX2a_HOX2a
    ------>ZmHOX2a(1)      <---------ARR14(2)                      <---------YAB1
 ===================================HOX2a_HOX2a                 <---------MYB52(1)
 ------>ZmHOX2a(1)--------->MYB111(2)--------->ATERF1(2)       <---------RAP2.6(3)
 ==================================HOX2a_HOX2a        --------->ZAT2
<---------ALFIN1  --------->MYB55(2)<---------LBD16   <---------ZAT2          <---------ANAC55(2)
---->ZmHOX2a(1)  <--------P--------->ARR14(2)         <---------STY1(2)       --------->ANAC55(2)
===================================HOX2a_HOX2a        --------->STY1(2)--------->YAB1
 
cctcctccttattactactggttgttgttcgatccggtttccggcagagggtgaaccagctagggccgtttttataagaatacatatttatgcacacata  13099300
                          <---------O2
                          <---------bZIP60(2)
                          ----------->RAV1(2)
                        --------->ZAT18                 <------ZmHOX2a(1)
                       ----------->HVH21                =============HOX2a_HOX2a
              ------>NtERF2 ----------->HVH21     --------->ANAC58
             ------>NtERF2<---------At4g35610     --------->ANAC58   <---------ARR11(3)
           <---------At4g35610                  ---------->DOF2      --------->ARR11(3)
           --------->At4g35610       ---------->DOF2 <-----------RAV1(2)
           --------->SPL7 --------->At4g35610--------->LBD16     ---------->DOF2                 ---
        ----------->RAV1(2)<---------MYB59 <---------LBD16    <------ZmHOX2a(2)               <-----
 
gagacgactctccctgcggcccaagagtgacctgaccttgtaaagctccggtgaagccaggagagatcgaaagctcttggagacgagtgagagaatagga  13099400
                      --------->YAB1                    --------->GLK1(1)
                      <---------ICU4                <---------ANAC55(2)
               ------->MYC2                         --------->ANAC55(2)------>NtERF2
               ------->MYC3                <---------HSFB2a(2)  --------->ETT(2)
               <-------MYC3                --------->HSFB2a(2)  <---------ETT(2)
               <-------MYC2               <---------LBD16 <-----------RAV1(1)
              <---------ANAC58         --------->ATHB12<---------ARR14(2)
   <---------AHL20(2)--------->ICU4   <---------ATHB12 --------->ARR14(2)     <<<<<<<<<TBF1
  --------->YAB1 --------->SPL7     ------>MYB83  --------->MYB52(1)  <---------ALFIN1 <<<<<<<<<TBF1
-------->GT1  <---------ANAC46      ------>MYB46(1) <---------ANAC46------>NtERF2<<<<<<<<<TBF1
-ZmHOX2a(1)   <---------ANAC58    <---------MYB59----------->HVH21 --------->ANAC46 <<<<<<<<<TBF1
 
tagtataatattgagacgcgtgcgatgatgaccaataccaaatcatcgggaagtgacggatttgttgtcgacgacaccttcttcttcttcttcttcatgt  13099500
                                                                         <------ZmHOX2a(1)
                                                                     <------NtERF2
                                                                  <---------LBD16
                                                                  --------->At4g35610
                                                                  <---------At4g35610
                                                                  <------NtERF2
                                                                  --------->RAP2.3(1)
                                                                  --------->ATERF1(1)
                                                                 <---------DEAR4(2)
                                                                 <---------RRTF1(1)
                                                                 ------>NtERF2
                                                                 <---------RAP2.6(1)
                                                                 <---------RAP2.3(1)
                                                                 <---------ORA47(2)
                                                                 <---------ERF1
                                                                 <---------ATERF1(1)
                                                                <---------RAP2.3(2)
                                                                <---------RAP2.6(2)
                            --------->AtMYB61                   <---------RRTF1(3)
                           --------->MYB46(3)                   <---------RRTF1(2)
                          ------>MYB83                          <---------RAP2.3(3)
                          -------->P                            --------->ATERF1(2)      -----------
                        --------->AtMYB61                       <---------ATERF1(2)    <---------ANAC46
                     ------>NtERF2                              <---------DEAR3(1)     <---------ANAC55(2)
                    --------->WRKY12                            --------->DEAR3(1)     --------->ANAC55(2)
                    --------->WRKY38(1)                        <---------ABI4(1)       <------MYB83
        <---------MYB52(1)------>MYB46(1)                      <---------LBD16         <------MYB46(1)
       <-------GAMYB--------->WRKY45                           --------->ATERF1(1)     <---------ANAC55(1)
   --------->O2     ----------->HVH21                        <---------DEAR3(1)       --------->MYB111(1)
   <---------O2   --------->LBD16                   <----------DOF2<---------ANAC46   --------->MYB59
   <---------bZIP60(1)  <---------MYB59      <----------DOF2 ===================HOX2a_HOX2a   <-----
   --------->bZIP60(1) --------->MYB46(3)    <---------DAG2  ------>ZmHOX2a(2)     <---------GLK1(2)
 ------>NtERF2    <---------At4g35610     <-----------GT1  <---------ARR14(2) --------->MYB52(1)
--------->DEAR3(1)--------->At4g35610  <----------DOF2     --------->ARR14(2) ----------->RAV1(1)  <
 
tcgacgacgtcgttgtctctccgctgaccaacctctccatttcttttacttttttctttggggatcggcggcggaaggagacaacagattaggtgttaat  13099600
                                                                                           <--------
                                                                                     <---------YAB1
                                                                             <---------WRKY38(1)
                                                                             <---------WRKY12
                                                                            --------->WRKY18(1)
         <----------DOF2                                                   <-----------HVH21
      <-----------------AGL1                                              <------MYB83--------->YAB1
 <---------MYB52(1)                                                       <------MYB46(1)  ---------
>GT1 <---------ZAT18            <-----------GT1                       <-----------RAV1(1) <---------
----YAB1 <---------DAG2    <---------DAG2                            --------->ARR11(3)   <---------
---------MYB46(3)          <----------DOF2    <---------ANAC46       <---------ARR11(3) <-----------GT1
 
attcgttgggccctttatgggccttgatcactttttaactaaaaacgttttgtgtttagtttttttgccgaagatgttggtcaagggtattatactattt  13099700
               <---------ANAC58
               <---------ANAC46         --------->O2
          <---------ANAC46              --------->TGA1a                                         *TSS
     <---------YAB1                     =========================================MYC_MYB     <------
-------AGL15   <---------ANAC58         ==================================bZIP_DOF --------->YAB1
------>AGL15   <---------bZIP60(2)      <---------O2                               ----------->GT1<-
--------AGL2   --------->ALFIN1         <---------TGA1a                  ------->GAMYB   <----------
--------AGL3   <---------REM1(1)<-----------HVH21              <----------DOF2   <------------CBF<--
 
atgggattatgttttgtggtgtggcatttgcagagtgtcagagacgtcgtttgattttgggagagacttttgttaaccgaggggaattgtaatttccttt  13099800
                                               -------->ATHB1
                                               <--------ATHB1
                                               --------->YAB1
                                <---------GLK1(2)
                      <---------TOE1(1)        --------->ATHB51                      --------->At5g28300
--------->LBD16       <---------TOE2(1)        --------->ATHB12                     ----------->GT1
------>NtERF2        <-------TEIL              <---------ICU4                      <---------TOE2(3)
----DOF2            --------->CCA1(2)         <---------ATHB12                     <---------YAB1
--------LBD16      <---------SPL7             --------->ICU4                    --------->ICU4
-GT1      <---------GLK1(2)   <---------YAB1--------->WOX13(1)                  <---------ATHB51
-------At5g28300 <---------TOE2(3)         ------------>ATHB5        <---------TOE2(3)     ---------
 
tgccgcgattttggattttcaaggtacgaggttttgattctcatcttcaatcattgaagtttgctaaatgctaatgttcagaaattatggtaaattatag  13099900
                                                                                           ---------
                                                                                           <--------
                             <---------ARR11(3)                                           <---------ANAC58
                             <---------AHL20(1)    <---------ANAC58             <---------ANAC46  <-
                        --------->ZAT18       <-----------RAV1(1)               <---------ANAC58  <-
                       --------->ANAC58   <---------ATHB12               <---------At4g35610     <--
                       --------->ANAC58  --------->ANAC58         <---------At4g35610     <---------ANAC58
             <---------ICU4  --------->AHL20(1)    <---------ANAC58   <----------DOF2     <---------
 --------->ZAT14     ------>MYB46(1)     ------>MYB83         <-----------GT1   <---------ANAC58 <--
 <---------ZAT14     ------>MYB83        --------->ANAC58 <---------AHL20(2)  <---------YAB1 -------
>YAB1       --------->MYB46(3)           ------>MYB46(1) --------->AHL20(2) <---------At4g35610  ---
 
ccagtatacattctaaccattaccaagcgcaatattttcataccaagcattgttgctcgatataatttccgctctttgctgatgcttgttttagcttgat  13100000
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AGI:  At4g25710.1   
Description:  kelch repeat-containing F-box family protein. Identical to F-box/Kelch-repeat protein At4g25710 [Arabidopsis Thaliana] (GB:Q9SZZ9;GB:Q67YB0); similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT5G51250.1); similar to 117M18_27 [Brassica rapa] (GB:AAZ66946.1); contains InterPro domain Kelch repeat type 1 (InterPro:IPR006652); contains InterPro domain Kelch-type beta propeller (InterPro:IPR015915); contains InterPro domain Kelch repeat type 2 (InterPro:IPR011498); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain Kelch related (InterPro:IPR013089); contains InterPro doma
Range:  from: 13098150    to: 13099540    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At4g25719.1   
Description:  other RNA
Range:  from: 13099797    to: 13101026    Orientation: Forward
Links:  TAIR  MIPS 
 
AGI:  At4g25720.1   
Description:  glutamine cyclotransferase family protein. similar to Chain A, Unbound Glutaminyl Cyclotransferase From Carica Papaya. (GB:2IWA); similar to glutamine cyclotransferase precursor [Carica papaya] (GB:AAC27745.1); contains InterPro domain Glutamine cyclotransferase (InterPro:IPR007788); contains InterPro domain Nitrous oxide reductase, N-terminal (InterPro:IPR011045)
Range:  from: 13099827    to: 13102587    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
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