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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                               --------->ANAC58
                                           ------>NtERF2
                                          <---------ATERF1(2)
                                          >>>>>>>>>AtERF-1
                                          --------->ATERF1(2)
                                          >>>>>>>>>AtERF-2
                                          >>>>>>>>>AtERF-4
                                          >>>>>>>>>AtERF-5
                                          --------->RAP2.3(3)
                                          --------->RAP2.3(2)
                                          >>>>>>>>>AtERF-3
                                          --------->RAP2.6(2)
                                          --------->DEAR3(1)
                                         --------->ATERF1(1)
        <---------ARR11(3)               --------->RAP2.3(1)
        --------->ARR14(2)               --------->ERF1<---------WRKY38(1)
        --------->ARR11(3)               --------->MYB46(3)
        <---------ARR14(2)              <---------At4g35610
----------DOF2                          <---------ATERF1(1)
---------DAG2                           --------->At4g35610
----->RAP2.6(2)                        --------->ARR14(2)--------->At4g35610
--->At4g35610                          <---------ARR14(2)<---------At4g35610
----At4g35610                      <-------TEIL--------->ANAC58                     --------->ANAC58
-->DEAR3(1)                      <---------ARR14(2)    <---------WRKY12             --------->ANAC58
->MYB46(3)                    --------->LBD16---------->DOF2                       <---------LBD16
-At4g35610             --------->WRKY38(1)--------->ANAC46                    ------>ZmHOX2a(2)
>At4g35610      <---------ANAC46 --------->ARR14(2)  <-----------HVH21      --------->ARR14(2)
>ZAT2  --------->GLK1(1)     <---------LBD16<------NtERF2<------NtERF2      <---------ARR14(2)
-ZAT2  <---------GLK1(1)    <---------LBD16<---------RAP2.6(3)            <---------YAB1           <
 
cgctttttggatatccttggcgcatgttgactccgggattcgtagccgccaagccgagtcagcgaagttgagacatgctgatcggccacggagggctaat  13022300
                 <---------At4g35610
                 --------->At4g35610
                 <---------ZAT2
               <-------PIF5
               ------->MYC2
               ------->PIF5
               ------->MYC3
            <------------OsbHLH66
      <---------ANAC46
   --------->DEAR3(1)
   ==============================================bZIP_DOF
   --------->bZIP60(1)
   <---------O2<-------MYC3
   --------->TGA1a                                                                               ===
   <---------TGA1a  ------>NtERF2                                                                ---
   --------->O2<-------MYC2             --------->HSFB2a(1)                                  ------>MYB46(1)
   <---------bZIP60(1)           <---------ANAC46                                            ------>MYB83
   <---------bZIP60(2)       <---------At4g35610                <---------ANAC58   --------->ZAT14<-
   --------->bZIP60(2)       --------->At4g35610         ------>ZmHOX2a(1)       ===================
----------->HVH21--------->ZAT2<---------MYB46(3)    <---------ARR14(2)          --------->TGA1a ---
--------->DEAR3(1) >>>>>>>>>AtERF-3     <---------HSFB2a(1)     <---------ANAC58 ===================
---------At4g35610 >>>>>>>>>AtERF-4   ---------->DOF2--------->ARR14(2) ---------->ID1  --------->GLK1(1)
 
gcagcgacgtcgtgagcacgagctgccatctcagcggtttggaaagtcccgagccaaatcctggttttcttgtttggctctctcacttcagaaacccact  13022400
                                              --------->ANAC55(2)
                                              --------->ANAC46     <---------DEAR3(2)
                                              --------->ANAC58   <------NtERF2
                                     <---------ANAC58           <------NtERF2
        =======================================bZIP_DOF         ------>NtERF2
     --------->GLK1(2)               <---------ANAC58          --------->ANAC58
   --------->HSFC1(2)                <---------O2 <---------HSFB2a(1)                         <-----
   <---------HSFC1(2)                <---------bZIP60(2)       --------->ANAC58              -------
   --------->HSFB2a(1)               <---------TGA1a     --------->RAP2.6(3)                 <------
--------->LBD16                     <-----------------------TaNAC69(2)                       <------
===============================================MYC_MYB   --------->SPL7                      -------
------>MYB52(1)                   ----------->TGA1<---------HSFC1(2)                         =======
--------LBD16                     ----------->HVH21     <-----------GT1                    ---------
======MYC_MYB        ------>ZmHOX2a(1)        --------->ANAC58--------->MYB46(3)    <---------O2
----->P <----------DOF2         <---------ANAC58  --------->HSFB2a(1)     <---------LBD16 <---------WRKY12
===================bZIP_DOF     <---------ANAC58  --------->HSFC1(2)<---------MYB52(1)    <---------WRKY38(1)
 
taccggagtttctttgacgaactcctctgtaaattgggtgacgagtctcacgaaacttcttacggcccgccggtttcttcggacaactcgtggccaacgt  13022500
    <---------ICU4                                                            --------->ZAT14
    --------->YAB1    --------->ANAC58                                        <---------ZAT14
------HVH21           --------->ANAC58                                        --------->ZAT18
-->TGA1a             <-------TEIL                                           <---------ZAT18
---O2        <----------DOF2                       --------->At4g35610      --------->ZAT14
---TGA1a   ------>NtERF2                         --------->DAG2      --------->YAB1      --------->ANAC46
-->O2     --------->ANAC46            <---------ICU4               <---------WOX13(1)    --------->ANAC58
========================bZIP_DOF     <---------ATHB12            --------->ATHB12        --------->ANAC58
>MYB52(1)<---------LBD16        ------>NtERF2   ---------->DOF2 <-------TEIL<---------ZAT14 --------
 
cggacaataatctccgccttgaggctcgtaatcggagccaaacatttcagaaaaagctgaaaatgagttcattgatcagagtactctgtttcaagaaact  13022600
                                                               --------->ARR14(2)
                                                               <---------ARR11(3)
                                                               <---------ARR14(2)
                                                               --------->ARR11(3)      <---------ARR11(3)
                                                          ----------->GT1           --------->AHL20(2)
               --------->ANAC55(2)                  ---------->DOF2         --------->DAG2        <-
 <---------TOE2(3)                                 <---------AHL20(2)<---------ANAC58  --------->ARR11(3)
 <---------TOE1(3)----------->GT1                  --------->AHL20(2)<---------ANAC58 <---------CCA1(2)
 --------->DAG2<---------ANAC55(2)              --------->YAB1<---------CCA1(2)     <---------AHL20(2)
->GLK1(2) <---------------AtSPL8      <----------DOF2   <---------ARR11(3) ---------->DOF2 <--------
 
ggataaggtttaagtagtacgtagttactagagttctcagtctttttggattaataaaagatagtatatctgtcttggtaaagctatttatatctctctc  13022700
                  <---------GLK1(2)                                                               --
                <-------TEIL                                                      <------NtERF2   <-
                ----------->ARR10                                                --------->LBD16  --
            <---------TOE2(3)                   --------->DAG2                   <------NtERF2   <--
       <----------DOF2            *TSS         ---------->DOF2            <------------CBF  --------
    <-----------GT1--------->GLK1(2)        ----------->TBP            <-----------TBP      <-------
---------DOF2  <--------P         <---------ZAT14                    <-----------TBP <------ZmHOX2a(1)
----------------ANAC81<----------DOF2   ----------->GT1       <------------CBF <---------LBD16   ---
 
tcttttttttcttttcaggtagattctttttcaagtgtgtagttagtataaaaagtgagagtgagaattggtgtttatattggccggaggagagataacg  13022800
                                              ----------->GT1
                                             <---------------AtSPL8
                                            <---------ZAT14
                                          --------->REM1(2)                                        <
             --------->ANAC58           ------->MYC2                                               -
             --------->ANAC58           <-------MYC3                                      <---------O2
             --------->ANAC46           ------->MYC3                                      <---------bZIP60(2)
            <---------LBD16             <-------MYC2                                      <---------TGA1a
          --------->ZAT18               ------->MYC4                                      <---------ANAC46
        --------->At4g35610             <-------MYC4                                      <---------ANAC58
        <---------At4g35610            --------->ANAC55(2)                                <---------ANAC55(1)
  --------->ALFIN1                     <---------ANAC46                                   <---------ANAC58
<-----------RAV1(1)                    <---------ANAC55(2)                                --------->TGA1a
------->GLK1(1)                        --------->O2                                       ==========
--------GLK1(1)                        <---------TGA1a                                    --------->O2
------->CCA1(2)                        <--------ABF1                                      ==========
-------ARR14(2)                        <---------O2                <---------TOE1(2)   ----------->TGA1
->MYB52(1)<---------ZAT14         ----------->HVH21              --------->TOE1(2)     ----------->HVH21
--DOF5.7(2)--------->MYB52(1)    <---------WOX13(1)       --------->ANAC58          <-----------HVH21
------>ARR14(2)         ---------->ID1 --------->TGA1a    --------->ANAC58  <---------ALFIN1--------
 
gatatgtggggagcacacggagtttttgtctctgtgaatgacacgtgtatagtacatagcgaagcaatcccacgatgttccactcgctgtctgacgtgtg  13022900
                                                                                      <------MYB83
                                                                                      --------->MYB55(2)
                                                                                      <---------MYB46(3)
                                                                                    <--------P<-----
                                                                                   <-------GAMYB <--
                                                                                  <---------MYB46(3)
                                                       --------->AHL20(2)         --------->MYB55(2)
                                                     <----------DOF2             <---------AtMYB61
 --------->WRKY38(1)                      <----------DOF2                      <-----------RAV1(1) <
 --------->WRKY12                        --------->TOE1(3)                     --------->ALFIN1 <---
 ----------->HVH21                       --------->TOE2(3)                 <---------ANAC58   <-----
----------DOF2                           --------------->AGL15         <---------ANAC58   <---------ATERF1(1)
----->ZmHOX2a(1)                    --------->DOF5.7(2)<---------AHL20(2)  <---------ANAC58   ------
==========bZIP_DOF           <---------ZAT14      <---------ARR11(3)   --------->ALFIN1 <---------ANAC58
==========bZIP_DOF     <-----------GT1<---------DOF5.7(2)              <---------ANAC58 <---------ANAC58
->ALFIN1   ---------->DOF2   --------->ZAT14      --------->ARR11(3) --------->ALFIN1 <------MYB46(1)
 
tcctttgacccttgtaaagagacttttgactcttcactcgttaacctttatgagttctttaaattctatcgagtgtgtgcctgtgtggttggctggctgc  13023000
                                                                                              <-----
                                                                                              <-----
  <-----------GT1                                                                            -------
----At4g35610           <---------ATHB12                                                     <------
-----GAMYB              <---------YAB1            <-----------GT1                           --------
---------MYB46(3)     ------>ZmHOX2a(1)         <-----------HVH21              <---------ARR11(3)
--------RAV1(1)<---------AHL20(2)          --------->AHL20(2)                 --------->CCA1(1)    -
----ZAT2      <---------AHL20(2)           <---------AHL20(2)    <---------YAB1--------->ARR11(3)  <
--->At4g35610 --------->AHL20(2)       <---------YAB1          --------->YAB1 --------->RVE1(1)   <-
 
tgttgttacaatcgtttttaaattcctatgaataaacaaattgtcattaattgtcacccgtctataacataatagacataaatatctctgtgaaatgata  13023100
                                                                                                   -
                                                                                                  <-
                                                                                                  <-
                                                                                                ----
----RVE1(1)                                                                                    -----
----CCA1(1)                                                                                    <----
-->ARR11(3)                                               --------->ZAT6                      ------
---ARR11(3)                                           --------->AHL20(1)                   ---------
->YAB1                                                --------->AHL20(2)                   <--------
-------->AHL20(2)                                    --------->YAB1                        ---------
---------AHL20(2)                             <-----------GT1                             --------->AHL20(2)
--------AHL20(2)                      ------>ZmHOX2a(1) --------->YAB1  ---------->DOF2   <---------AHL20(2)
 
ttttaaatactcatgtagtatttgtattggaagtagatgtcctaatatttaaccaaaaataatactacaatatagaaaagcttgattttttaaaaaaatt  13023200
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AGI:  At4g25490.1   
Description:  CBF1 (C-REPEAT/DRE BINDING FACTOR 1); DNA binding / transcription activator/ transcription factor. Identical to Dehydration-responsive element-binding protein 1B (DREB1B) [Arabidopsis Thaliana] (GB:P93835;GB:O65611;GB:Q5QE71); similar to CBF2 (FREEZING TOLERANCE QTL 4), DNA binding / transcription activator/ transcription factor [Arabidopsis thaliana] (TAIR:AT4G25470.1); similar to CRT/DRE binding factor 1 [Iris lactea var. chinensis] (GB:AAZ57434.1); contains InterPro domain DNA-binding, integrase-type; (InterPro:IPR016177); contains InterPro domain Pathogenesis-related transcriptional factor and ERF, DNA-binding; (InterPro:IPR001471)
Range:  from: 13021790    to: 13022735    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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