Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                  --------->LBD16            --------->LBD16                                    --------->ANAC58           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                --------->ANAC46      --------->HSFB2a(1)                                     <---------LBD16     <-----------ARR10                                      --------->PCF2     <---------ARR11(3)                                     <---------ARR14(2)     --------->ARR14(2)                 --------->ANAC58    --------->ARR14(2)     <---------ARR14(2)                 --------->ANAC58    <---------TCP20     --------->ARR11(3)            ------->TEIL        <---------ANAC46            --------->DEAR3(1)     <---------ARR11(1)        <----------CDC5      ----------->HVH21              ----------->HVH21    ------>MYB83              --------->At4g35610   --------->WRKY38(1)           <---------At4g35610    <---------ARR14(1)        <---------At4g35610  <-----------HVH21              --------->At4g35610    <---------CCA1(2)         --------->LBD16      <---------MYB52(1)       <-------TEIL <----------DOF2    ------>MYB46(1)           ----------->RAV1(2) <---------At4g35610     <---------GLK1(2)  --------->AtMYB61       <---------ARR14(2)      --------->At4g35610     <---------ARR14(2)  <---------MYB111(1)     --------->ARR14(2)      --------->LBD16         --------->ARR14(2) ------->ANAC46       --------->At4g35610       <---------LBD16--------->ANAC58<---------At4g35610   cccaccaaatcttccccagttattagcagtcccgctgaacccaggccctctccggtgactcggacccgcaaacccagattcatcagcgacccttttattt  13009200                                                                              --------->ZAT2                                                                              <---------At4g35610                                                                          <-----------HVH21                                                                         --------->ORA47(1)                               <------NtERF2                             --------->ANAC46                              --------->LBD16                           --------->MYB46(3)                             --------->ANAC58                           --------->DEAR3(1)                             --------->ANAC58                           <-------PIF5                             --------->ANAC46                           ------->PIF5                            <---------LBD16                            --------->ATERF1(1)                           <---------ATERF1(1)                         --------->DEAR3(2)                          <---------ARR14(2)                           <---------At4g35610                          --------->ARR14(2)                        --------->ZAT18                    ------->TEIL                                    <---------ABI4(2)                    --------->ARR14(2)                          --------->ATHB12   <---------At4g35610  ----------->HVH21                      --------->ICU4 <---------ZAT2   --------->At4g35610  --------->LBD16                        <---------YAB1 --------->At4g35610   --------->HSFC1(2)  --------->ANAC46                      --------->MYB52(1)  --------->ANAC58   <---------HSFC1(2) <---------LBD16            --------->MYB52(1) <---------ZAT14          <-------  --------->GLK1(2) <---------ARR14(2)          <--------P   <---------DOF5.7(2) --------->ANAC58----   gaagaagctgctactggacccgaacccggacccggcaattctctatgcaggtaagggcatgggtaacgattgcaccggccagctcgccagtggaaacaaa  13009300                                    --------->DREB2C(2)                                    ------->GAMYB                                   --------->ATERF1(1)                                   --------->DEAR4(2)                                   <------NtERF2                                   --------->DEAR3(2)                     <------NtERF2 --------->MYB46(3)                     <---------At4g35610                    <---------DEAR3(2)                    <---------SPL7 --------->ORA47(2)                    ------>NtERF2<---------ALFIN1                   <---------DEAR3(1)--------->ABI4(1)                  --------->ATERF1(1)------>NtERF2                  <------NtERF2  --------->DEAR3(1)                 <---------SPL7 --------->MYB46(3)                            >>>>>>>>>RAP2.2                 <-----------HVH21------>NtERF2                            <---------CCA1(2)  <---------YAB1 <---------ATERF1(1)--------->DEAR3(1)                  <-------TEIL            ----- --MYB52(2)   <-----------HVH21 <---------ABI4(2)                      <---------MYB52(1)       <---- ----->HSFB2a(1)<---------DEAR3(1)<---------ATERF1(1)              ------>ZmHOX2a(1)            <----   ccttctgatttgagtccgtcgtcggccgattagagccaccgcccagtctttgaaagactctcttgtttcctccgttcatatctaaatccatcgaattgga  13009400                                                                                       --------->YAB1                                                                                      <------ZmHOX2a(2)                                                                                      <---------ATHB12                                                             <---------YAB1     <---------ARR14(2)                                                           <---------ICU4       --------->ARR14(2)         <-----------GT1                                   <--------HAHB4      ------>MYB46(1) ---->ARR14(2)                               <---------DOF5.7(2) <---------ZAT6------>MYB83 -----GLK1(2)                            ========================HOX2a_HOX2a <---------MYB59 -----ARR14(2)          <---------LBD16  ------>ZmHOX2a(1)<------ZmHOX2a(2) ----------------->AGL1   ttctctctaaattacgactcagaaaactcggaattggattatcctgtaaacgtcgaatggatcattactgttcaaaataccaaatccgatcataagtaaa  13009500                               --------->YAB1                             --------->MYB52(1)                            ----------->HVH21                       ------->TEIL                    --------->MYB46(3)                    --------->ANAC58                             <---------AHL20(2)                 <                    --------->ANAC58                           --------->YAB1                     ---                 --------->TOE1(2)<---------GLK1(2)       <-------TEIL                  <----------DOF2   ---------->DOF2  <---------MYB52(2)<-----------GT1 <---------------AtSPL8---------->DOF2--------->YAB1   caaaaacaagcgcgaaaatcgaacgaacccctaacagaatttacctctctgaatcaagagtacataaataatctctcacaaaggagttttctttgataaa  13009600                                                                                           <---------                                                                                         <---------ZAT2                                                                                         --------->At4g35610                                                                                         --------->ZAT2                                                                                         <---------At4g35610                                                                                      --------->TGA2(2)                                                                                     <-----------HVH21                                                                                     <-----------TGA1                                                                                    <---------O2                                                                                    --------->ANAC58                                                                                    --------->ANAC46                                                                                    --------->ANAC58                                                                                    --------->bZIP60(2)                                                                                    --------->O2                                                                                    <---------TGA1a                                                                                    --------->TGA1a                                                                                  <---------ALFIN1                                                                               --------->ANAC46                                                   <---------YAB1            ------>ZmHOX2a(2)                              <---------MYB52(1)  --------->KAN4(2)         <------ZmHOX2a(2)                        <---------ARR14(2)       <---------KAN4(1)         <---------ARR11(3)                  *TSS  --------->ARR14(2)       --------->KAN4(1)         --------->ARR14(2)             --------->ARR11(3)                 <------ZmHOX2a(2)          <---------ARR14(2) ---------YAB1 <-----------HVH21           <---------LBD16                 --------->ARR11(3) ------>YAB1 <---------ARR11(3)      <---------AHL20(2)                    <---------ARR14(3)    ----   tcaaaattggaagaagatgtcaagcggcttcggttttttttaatcttcggatcattcttgaagaaaacataagtgaagatccctccacgtcagcttcaca  13009700                                                                              ----------->GT1                                                                         ---------->DOF2                                                                  --------->TOE2(3)              <---         <---------AHL20(2)                                      ----------->GT1              -------     <---------MYB46(3)                                          <---------ZAT6              -------- --HVH21 --------->AHL20(2)    --------->AHL20(2) ------>ZmHOX2a(2)     --------->YAB1       <------- -------->CBF            <-----------GT1         <---------At4g35610 --------->WOX13(1)      <-------   tcaatggtcgtttaatttcttcttgttttactataaatttttgaaaatttgatctgtctataaactattgttaatcaaagttgtatataaaaccagattc  13009800    --------->YAB1 --------GT1 -->GLK1(2)                                              ---------->DOF2 ->ARR14(2)                                  ----------->GT1                                        < --ARR14(2)              <-----------GT1    <---------TOE1(3)                                    ---- --GLK1(2)            ----------->GT1       <---------TOE2(3)                 XXXXXXXXXXXXXXXXXXXX>MIR862-5P   taccatttgtaattttgtagtaatttgttacaaattacaccgagttaaggtaaattactcaaaggctagtctctgagtgccaacaagtgaagcatatgat  13009900                                                       --------->ZAT18                                                       <---------ZAT14                                                     <---------ZAT14                                               <-----------HVH21                                         ------>ZmHOX2a(2)                     --------->ZAT14                                       --------->ARR11(3)        ------>ZmHOX2a(2)      <---------At4g35610              <---------ARR11(3)       <------ZmHOX2a(2)     <---------ZAT14     --------->ANAC46                  <-----------ARR10--------->ANAC46       <---------ZAT14 ----------DOF2                       --------->YAB1 <---------ZAT18          ----------->HVH21 -->ZmHOX2a(2)                  <---------ARR11(3)   --------->ZAT14<---------GLK1(2) --------->ZAT14   cccttttgcgctaccaattcggaatgtgttccaagctctatgatcttcccatcagagcacacagcgatctgattcgcgctctgaactgtgctcagtctgt  13010000                                             --------------------->WRI1                                         <---------ZAT18                                         ------->GAMYB                                   --------->ANAC58                                        --------->ANAC46                                 --------->ANAC58                                        --------->ANAC58                               <---------ANAC46                                 ----------->GT1                                       <---------ANAC58                                 <---------DEAR3(2)    --------->MYB46(3)              <---------ANAC58                           --------->At4g35610        <---------At5g28300    --------->ZAT18                         --------->YAB1 --------->ANAC58                     <---------ZAT18                  ------>ZmHOX2a(1)  <---------WRKY38(1)                     --------->ZAT14          <-----------RAV1(1)----------->HVH21        -------->P             <---------ZAT14---------         <---------TOE2(3) <---------At4g35610  --------->ZAT14            <---------At4g35610   --------->WRKY38(1)<----------DOF2<---------WRKY12--------->MYB52(1)    --------->At4g35610 ------   gagcgatgactaatgttgtcctgtctttcatcagacggttcaacgcactctggactaaccgctcgctcactgcatccagcgcacttgtggcctgcaacaa  13010100  Previous    Next  AGI:  At4g25440.1    Description:  ZFWD1 (zinc finger WD40 repeat protein 1); nucleic acid binding / zinc ion binding. similar to WD-40 repeat family protein / zfwd2 protein (ZFWD2), putative [Arabidopsis thaliana] (TAIR:AT5G51980.1); similar to WD-40 repeat family protein / zfwd2 protein (ZFWD2), putative [Arabidopsis thaliana] (TAIR:AT5G51980.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO66448.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 13006737    to: 13009618    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g25450.1    Description:  ATNAP8 (Arabidopsis thaliana non-intrinsic ABC protein 8); ATPase, coupled to transmembrane movement of substances. Identical to Non-intrinsic ABC protein 8 (NAP8) [Arabidopsis Thaliana] (GB:Q8LPQ6;GB:O65615;GB:Q67ZJ9;GB:Q67ZN9;GB:Q682F1); similar to ATTAP2 (Arabidopsis thaliana transporter associated with antigen processing protein 2), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT5G39040.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70412.1); similar to ATP-binding cassette transporter, subfamily B, member 8, group TAP protein PpABCB8 [Physcomitrella patens subsp. patens] (GB:EDQ595 Range:  from: 13009743    to: 13013981    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version