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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                          --------->ANAC58
               <---------ARR11(3)              ----------->GT1            --------->ANAC58
               --------->ARR11(3)             --------->DAG2            *TSS
              <---------HSFB2a(1)          --------->ARR11(3)  ----------->GT1   --------->ATHB12 --
              --------->HSFB2a(1) --------->DAG2              <---------AtMYB61  <---------ICU4 ----
      --------->ATHB12           ---------->DOF2   ---------->DOF2     --------->ANAC46 ---------->DOF2
   <------ZmHOX2a(1)           ------->GAMYB ---------->DOF2--------->ALFIN1    <---------ATHB12<---
 
tttggaggaagattggaagatttcaagtattcaacgaaaaggagaagataaagtaaaaggagagtgtggtttcaacgaagcaaatgatttcaaaaggaga  13005900
          <------NtERF2
          ------------>CBF
         ------>NtERF2
         --------->RAP2.6(2)
        <---------ATERF1(2)                                                             --------->YAB1
        <---------RAP2.6(2)                                                    <---------PCF2
        --------->ATERF1(2)                                     ------->TEIL   <-----------HVH21
        <---------DEAR3(1)                                 <---------ICU4     <------MYB46(1)
       --------->RAP2.6(3)                                <---------ATHB12    <------MYB83
      <---------ATERF1(1)                                 --------->ICU4     --------->MYB55(2)
   --------->O2                                 <---------RVE1(1)            <---------MYB46(3)  ---
   <---------O2                                 <---------CCA1(1)           --------->ALFIN1    <---
 --------->YAB1                     <---------AHL20(2)  --------->YAB1    <---------ANAC58    ------
<---------ATHB12                  ----------->TBP   <-----------GT1       <---------ANAC46    ------
------->WOX13(1)             ----------->GT1   --------->ARR11(3)         <---------ANAC58   -------
-------->CBF       --------->At4g35610         <---------ARR11(3) --------->TOE2(3)     <---------ICU4
------KAN4(2)      <---------At4g35610        <<<<<<<<<RAP2.2   <-------TEIL<--------P <---------ATHB12
 
acaatcacgaggcggcaatggcagaagtcaagtagttatataaacatttagatatttactaataatgtacattagtggggtgggtcacaaatcataacca  13006000
                                                                 ----------->HVH21
                                                                <-----------HVH21
                                                               --------->bZIP60(2)
                                                               --------->TGA1a
                                                               --------->O2
                                                               <---------TGA1a
                                                               <---------O2
                                                               --------->ANAC55(1)
                                                   <---------ANAC58
                                                   <---------bZIP60(2)
                                                   <---------ANAC58
                                                   <---------ANAC55(2)
                                                   <---------bZIP60(1)     --------->ANAC58
                                                   --------->bZIP60(1)     --------->ANAC46
                                                   --------->ANAC55(2)   <---------DOF5.7(2)
                                                   <---------ANAC46    --------->DOF5.7(2)
                                                  ----------->STF1    <----------DOF2
                                                  ----------------------->TaNAC69(2)
                                                  <-----------------------TaNAC69(2)
                                                ----------->TGA1<-----------TGA1
                                              <---------ANAC58 --------->ANAC58
                                              <---------ANAC58 --------->ANAC55(2)
                                            <---------ZAT14    --------->ANAC46
     --------->YAB1                         --------->ZAT14    <---------ANAC55(2)              ----
    <-------TEIL                           --------->ALFIN1    ==================bZIP_DOF       ----
--------->AHL20(2)                       <---------ANAC46      --------->ANAC58                 <---
------>YAB1                             <---------DEAR3(1)   <---------ALFIN1                   ----
------YAB1                  <-----------HVH21 <---------ANAC46<-----------STF1          --------->GLK1(1)
->GAMYB--------->ICU4   =================================================MYC_MYB --------->YAB1 ----
--->YAB1<---------ICU4  -------->P------>NtERF2 ----------->HVH21--------->TGA2(2)      <---------GLK1(1)
-->MYB46(3)            <-----------GT1<---------MYB52(1)   <---------ALFIN1--------->ANAC58     ----
 
tcataaattcataatggccttcacattaacccgtcgaggcccttcggtggagtgacgtagtcccacacgtcacctttaacgcaaaaataagaaatccata  13006100
        --------->TOE2(3)
        --------->TOE1(3)
        <---------------AGL15
        --------------->AGL15
       ----------------->AGL2
 --------->ZAT6
----->ANAC58
----->ANAC46
------ANAC55(2)                  <-----------HVH21                                    --------->ATHB12
----->ANAC55(2)                 <-----------RAV1(1)                                  <-------TEIL
----->ANAC55(1)        <----------DOF2                                         <-------TEIL
----->ANAC58  --------->YAB1  <---------ICU4    <-----------GT1         <---------MYB52(1)
 
cgtaacacaaaccctaattagaaatacttttgatcatgtcgcatgctctaatttccattttgacaaaataactccgtttagtttcatattcattagagaa  13006200
                                                                                                   <
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                                                                                                   <
                                                                                                  <x
                                                                                                 <xx
                                                                                                 <xx
                                                                                                 <xx
                                                                                                 <xx
                                                                                                 <xx
                                                                                                 <xx
                                                                                                ----
                                                                                                <xxx
                                                                                                <xxx
                                                                                                ----
                                                                                                ----
                                                                                                <xxx
                                                                                                <xxx
                                                                                                <xxx
                                                                                               <xxxx
                                                                                               <xxxx
                                                                                               <xxxx
                                                      <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)         -----
                                                   <---------PCF2                             ------
                                                   <xxxxxxxxxxxxxxxxsmallRNA(s)               <xxxxx
                                                  <xxxxxxxxxxxxxxxxsmallRNA(i)                <xxxxx
                                                  <xxxxxxxxxxxxxxxxsmallRNA(s)                <xxxxx
                                                 <xxxxxxxxxxxxxxxxsmallRNA(s)                 <-----
                                                --------->ALFIN1                             <xxxxxx
                                                <---------MYB52(1)                         <xxxxxxxx
                                          --------->MYB46(3)   --------->ANAC58            <xxxxxxxx
                         --------->AHL20(2)    <xxxxxxxxxxxxxxxxxxxsmallRNA(s2)            <xxxxxxxx
                      --------->YAB1      --------->DEAR3(1)   --------->MYB46(3)          <xxxxxxxx
             <---------------AtSPL8    --------->ANAC58        --------->ANAC58            <xxxxxxxx
             --------------->AtSPL8    --------->ANAC58     --------->TOE1(2)            <----------DOF2
        --------->TGA2(1)--------->AHL20(1)<---------ALFIN1--------->DEAR3(2)          --------->ZAT18
        <---------TGA2(1)<---------AHL20(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <---------ANAC58<x
        --------->bZIP60(1)            --------->ANAC46   --------->PCF2----------->GT1<---------ZAT18
        <---------bZIP60(1)  ----------->GT1 <xxxxxxxxxxxxxxxxxxxxsmallRNA(l2)    <---------ANAC58<x
 
tgggcttactgacatcatggtacaaaaataaaatgtaatttcacgcccaccgtggggctcgaacccacgaccagaaggttaagagccttgcgctctacca  13006300
<xxxxxxxxxxxxxxxsmallRNA(fl3)
<xxxxxxxxxxxxxxxsmallRNA(le3)
xxxxxxxxxxxxxxxxsmallRNA(i)
xxxxxxxxxxxxxxxxsmallRNA(s)
xxxxxxxxxxxxxxxxsmallRNA(se3)
xxxxxxxxxxxxxxxxsmallRNA(fl3)
xxxxxxxxxxxxxxxxsmallRNA(se3)
xxxxxxxxxxxxxxxsmallRNA(se3)
xxxxxxxxxxxxxxxxsmallRNA(si3)
xxxxxxxxxxxxxxxxsmallRNA(fl3)
xxxxxxxxxxxxxxsmallRNA(s)
xxxxxxxxxxxxxxsmallRNA(i)
------->RAV1(2)
xxxxxxxxxxxxxxxxsmallRNA(se3)
xxxxxxxxxxxxxxxxsmallRNA(si3)
-->MYB46(1)<---------ANAC58
-->MYB83   <---------ANAC58
xxxxxxxxxxxxxsmallRNA(s)
xxxxxxxxxxxxxxxxsmallRNA(fl3)
xxxxxxxxxxxxxxxxsmallRNA(le3)
xxxxxxxxxxxxxxxxsmallRNA(se3)
xxxxxxxxxxxxxxxxsmallRNA(fl3)
xxxxxxxxxxxxxxxxsmallRNA(si3)
---->MYB52(1)   ----------->GT1
--->MYB46(3)<----------DOF2
xxxxxxxxxxxxxxxxsmallRNA(si3)
xxxxxxxxxxxxxxxxsmallRNA(se3)
xxxxxxxxxxxxxxxxsmallRNA(fl3)
----MYB111(1)  *TSS        <---------HSFB2a(2)
xxxxxxxxxxxxxxxxsmallRNA(l2)            <---------AHL20(2)
xxxxxxxxxxxxxxxxsmallRNA(le3)           --------->AHL20(2)
xxxxxxxxxxxxxxxxsmallRNA(se3)         ----------->TBP
xxxxxxxxxxxxxxxxsmallRNA(fl3)--------->At4g35610
xxxxxxxxxxxxxxxxsmallRNA(si3)<---------ZAT2    ----------->GT1                    <---------ZAT6
xxxxxxxxxxxxxxxxsmallRNA(s2) --------->ZAT2 <---------AHL20(2)                    ----------->GT1 --
xxxxxxxxxxxxxxxxsmallRNA(se3)<---------At4g35610              --------->O2     --------->DAG2   ----
xxxxxxxxxxxxxxxsmallRNA(s) --------->HSFB2a(2)<---------TOE2(3)               ---------->DOF2  -----
 
actgagctagacgggcttgttgttaattttccagcagaactatataaataatgtaaactatccccatgtctcatcttgagtaaaagtgttaaacattcaa  13006400
                                                                                                <---
                                                                                              ------
                                                                                              <-----
                                                                                              <-----
                                                            <---------At4g35610            ---------
         --------->ANAC58                               ------>MYB83                    --------->TOE1(1)
         --------->ANAC58                           ------->TEIL                        --------->TOE2(1)
     <-----------HVH21    ------>MYB46(1)  <---------DEAR3(1)                         <---------ANAC46
--------->ATHB12          ------>MYB83    --------->SPL7------>MYB46(1)        =====================
------->GLK1(2)           -------->P     <---------MYB52(1) --------->At4g35610<---------At4g35610
----->MYB46(3)      --------->DAG2       --------->ARR14(2) --------->ZAT2     --------->At4g35610
------->CBF       ---------->DOF2       <---------SPL7<---------MYB59          ----------->RAV1(2)
 
caatctttggtcacacaaatgaaaaggccaacctttcaatgcccgttcggctctgtacctagcagctacaagaacatttggcatctgtgcctcgtactgc  13006500
   --------->ANAC58
   --------->ANAC58       --------->At4g35610                         --------->HSFB2a(1)
--------RAV1(1)       --------->ARR14(2)                              <---------HSFB2a(1)
--->ZAT14             <---------ARR14(2)                    <------ZmHOX2a(1)           <---------ANAC46
----At4g35610      ----------->HVH21                   --------->HSFB2a(2)              <---------MYB46(3)
----ZAT14    <------ZmHOX2a(2)                     --------------->AGL15           ------->PIF5
>SPL7       <---------ARR11(3)                 <---------GLK1(2)  ----------->GT1  <-------PIF5
========RAV --------->ARR11(3)     --------->MYB46(3)  <---------HSFB2a(2)     <---------ZAT18  ----
 
tgtggcaagccagaagatcgatgtgaaaccgctcaatacccacaggctcagtttctctctagaggaagttggaaaatcccagtgctcgtggtcgtggaag  13006600
                                                       --------->KAN4(2)
                                 ----------->GT1   --------->ETT(2)
                           <---------ARR14(2)      <---------ZAT18
                    --------->HSFC1(2)       -------->ATHB1
                    <---------HSFB2a(1)      --------->ATHB12
        ----------->GT1<---------LBD16       <---------ICU4                                       --
       <---------TOE1(3)   --------->ARR14(2)--------->YAB1                        --------->ATHB51
       <---------TOE2(3) --------->HSFB2a(2)<---------YAB1                      --------->YAB1    --
----->ALFIN1        <---------HSFC1(2)      --------->ICU4                  ----------->HVH21 ------
 
tgatgctatcaaggttaataagatgcttcggaaactctgttaataccatcattgtggacattctcttcaacattcgaccctgaccataatttgaatacag  13006700
                                                         ------>ZmHOX2a(2)
                                                       <---------AGP1   --------->ANAC55(2)
                                                       <-----------ARR10<---------ANAC55(2)      <--
             --------->YAB1                            <---------ARR11(3)                -----------
        <----------DOF2          <---------ZAT14       --------->ARR11(3)              <---------WRKY18(1)
   --------->GLK1(2)        --------->AHL20(2)         --------->AGP1 <-----------GT1 --------->WRKY12
------->ANAC58              <---------AHL20(2)     ---------->DOF2--------->AHL20(2)  --------->WRKY38(1)
------->ANAC58        <---------CCA1(2)   <---------ICU4<------ZmHOX2a(2)             --------->WRKY45
----->GT1   <---------YAB1<----------DOF2 --------->YAB1--------->CCA1(2) ----------->HVH21---------
 
taagaaattctctttatgataaatcatctcttttattacactgaaacatgactacaaagatctatgccataaattacatgacaagaatgttgaccaaaga  13006800
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AGI:  At4g25434.1   
Description:  ATNUDT10 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 10); catalytic. Identical to Nudix hydrolase 10 (NUDT10) [Arabidopsis Thaliana] (GB:Q6NPD7;GB:O65616); similar to ATNUDT2 (Arabidopsis thaliana Nudix hydrolase homolog 2), ADP-ribose diphosphatase/ NAD binding / hydrolase [Arabidopsis thaliana] (TAIR:AT5G47650.1); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96281.1); contains InterPro domain Anti-sense to fibroblast growth factor protein GFG (InterPro:IPR003293); contains InterPro domain NUDIX hydrolase, core; (InterPro:IPR000086); contains InterPro domain NUDIX; (InterPro:IPR015797)
Range:  from: 13004007    to: 13005873    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At4g25435.1   
Description:  pre-tRNA. tRNA-Lys (anticodon: CTT)
Range:  from: 13006244    to: 13006316    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At4g25440.1   
Description:  ZFWD1 (zinc finger WD40 repeat protein 1); nucleic acid binding / zinc ion binding. similar to WD-40 repeat family protein / zfwd2 protein (ZFWD2), putative [Arabidopsis thaliana] (TAIR:AT5G51980.1); similar to WD-40 repeat family protein / zfwd2 protein (ZFWD2), putative [Arabidopsis thaliana] (TAIR:AT5G51980.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO66448.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680)
Range:  from: 13006737    to: 13009618    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
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