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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                          --------->ARR14(2)
                                                          <---------TCP20
                                                          --------->PCF2
                                                          <---------ARR14(2)
                                                       --------->LBD16
                                                      <---------ANAC46
                                                     <---------LBD16
 --------->TOE2(3)                                   --------->LBD16               --------->ANAC58
 --------->TOE1(3)                            --------->TOE1(3)            <-----------HVH21
----------->GT1                               --------->TOE2(3)         --------->ANAC55(2)
---------TOE2(3)                          ----------->HVH21             <---------ANAC55(2)
------->MYB52(1)              <---------AHL20(2)    ------->GAMYB       <---------ANAC46
-----ANAC55(2)               <---------AHL20(2)    --------->MYB46(3)   <---------ANAC58
---->ANAC55(2)               --------->AHL20(2)   <---------At5g28300   <---------ANAC55(1)
---AHL20(2)         <------ZmHOX2a(1)   <---------ANAC55(2)             <---------ANAC58
-->AHL20(2)       <---------TOE2(3)     --------->ANAC55(2)    --------->ANAC46    --------->ANAC58
 
gtaacgttaatatgcaagacttaggaatcaaatttaatctgatatgtgaccttaaccgcgggttccacgaggtttacgtgtgagagaggcaagttcaacc  13005500
                                                                                         ------>ZmHOX2a(2)
               <<<<<<<GRF7                                     --------->ANAC58        --------->ARR11(3)
             ----------->HVH21                       ------->GAMYB                  ------->MYC3
         <---------At5g28300                      --------->MYB52(1)                <-------MYC3  --
         <-----------GT1                 <-----------GT1       --------->ANAC58   ------->TEIL  ----
        <-----------GT1             ----------->GT1-------->P  --------->ANAC46  <---------ANAC58 --
    <---------DAG2                 <---------TOE2(3)--------->MYB46(3)           <---------ANAC58---
    <----------DOF2              ---------->DOF2  <-----------GT1               <-------TEIL   -----
 
agactccctttttaccctgacaacaaaaaacaaacaaaaaggttttacagaatcaaccgctcgctcactcaagaagacagagatgcatgtgatctcgcac  13005600
         ---------->DOF2                              --------->TOE2(3)
        <-----------HVH21                           --------->ICU4
---->MYB83                                          --------->GLK1(2)
----->AtMYB61                                   ------->GAMYB                               <-------
---->MYB46(1)                                  --------->ANAC58              <---------At4g35610
-------->RAV1(1)<---------ALFIN1        --------->At4g35610                  --------->At4g35610----
---->MYB46(3)--------->ANAC46 ------->TEIL     --------->ANAC58     <------ZmHOX2a(1)      <--------
 
caacacaaacctgtaagcgccactgctcgaatgaatctctaagcgctgcaacgaaattcttagtatccataggagttttcatctccacgatgactccacc  13005700
              --------->ANAC46
              --------->ANAC58
            --------->MYB52(1)
          --------->MYB46(3)
   <---------YAB1
 --------->YAB1                            --------->ANAC46
 <---------ICU4               --------->ARR14(3)
<---------ATHB12              <---------ARR14(3)
--------->ICU4--------->ANAC58--------->GLK1(2)            --------->ARR14(2)
--ALFIN1  <---------MYB52(2)  --------->ARR11(3)           <---------ARR14(2)
----->At5g28300               <---------ARR14(2)          <------ZmHOX2a(1)
-ZAT14 ----------------->AGL2 <---------ARR11(3)   <---------ANAC46    ----------->HVH21
 
gtaatcatcatccacaaacggaagtacttcgaaaatcttgtgttctactccattacgcagaggagcctcttggtctgacatgcttcaaactctgaaaaaa  13005800
                                                                          --------->ANAC58
               --------->ARR11(3)              ----------->GT1            --------->ANAC58
               <---------ARR11(3)             --------->DAG2            *TSS
              <---------HSFB2a(1)          --------->ARR11(3)  ----------->GT1   <---------ICU4 <---
              --------->HSFB2a(1) --------->DAG2              <---------AtMYB61  --------->ATHB12 --
      --------->ATHB12           ---------->DOF2   ---------->DOF2     --------->ANAC46 ---------->DOF2
   <------ZmHOX2a(1)           ------->GAMYB ---------->DOF2--------->ALFIN1    <---------ATHB12----
 
tttggaggaagattggaagatttcaagtattcaacgaaaaggagaagataaagtaaaaggagagtgtggtttcaacgaagcaaatgatttcaaaaggaga  13005900
          <------NtERF2
          ------------>CBF
         ------>NtERF2
         --------->RAP2.6(2)
        <---------RAP2.6(2)                                                             <---------ICU4
        --------->ATERF1(2)                                                    <---------PCF2
        <---------ATERF1(2)                                     ------->TEIL   <-----------HVH21
        <---------DEAR3(1)                                 <---------ICU4     <------MYB46(1)
       --------->RAP2.6(3)                                --------->ICU4      <------MYB83
      <---------ATERF1(1)                                 <---------ATHB12   --------->MYB55(2)
   <---------O2                                 <---------RVE1(1)            <---------MYB46(3)  ---
   --------->O2                                 <---------CCA1(1)           <--------P  --------->YAB1
 --------->YAB1                     <---------AHL20(2)  --------->YAB1    <---------ANAC58      <---
<---------ATHB12                  ----------->TBP   <-----------GT1       <---------ANAC58    ------
------KAN4(2)                ----------->GT1   --------->ARR11(3)         <---------ANAC46    ------
------->WOX13(1)   <---------At4g35610         <---------ARR11(3) --------->TOE2(3)    <---------ATHB12
-------->CBF       --------->At4g35610        <<<<<<<<<RAP2.2   <-------TEIL--------->ALFIN1 -------
 
acaatcacgaggcggcaatggcagaagtcaagtagttatataaacatttagatatttactaataatgtacattagtggggtgggtcacaaatcataacca  13006000
                                                                 ----------->HVH21
                                                                <-----------TGA1
                                                               --------->ANAC55(1)
                                                               --------->ANAC58
                                                               --------->bZIP60(2)
                                                               <---------TGA1a
                                                               --------->O2
                                                               --------->ANAC46
                                                   <---------ANAC46
                                                   <---------ANAC58
                                                   --------->bZIP60(1)
                                                   <---------bZIP60(1)
                                                   <---------bZIP60(2)
                                                   --------->ANAC55(2)     --------->ANAC58
                                                   <---------ANAC55(2)   <---------DOF5.7(2)
                                                   <---------ANAC58    --------->DOF5.7(2)
                                                  ----------->STF1    <----------DOF2
                                                  <-----------------------TaNAC69(2)
                                                  ----------------------->TaNAC69(2)
                                                ----------->HVH21--------->TGA2(2)
                                              <---------ANAC58 <---------O2--------->ANAC46
                                              <---------ANAC46 --------->ANAC58
                                            --------->ZAT14    --------->TGA1a
     --------->YAB1                         <---------ZAT14    ==================bZIP_DOF       ----
    <-------TEIL                           --------->ALFIN1    <---------ANAC55(2)              ----
--------->AHL20(2)                       <---------ANAC46      --------->ANAC55(2)              ----
------>YAB1                             <---------DEAR3(1)   <---------ALFIN1                   ----
------YAB1                  <-----------HVH21 <---------ANAC58<-----------STF1          <---------GLK1(1)
->GAMYB--------->ICU4   =================================================MYC_MYB        --------->GLK1(1)
--->YAB1<---------ICU4  -------->P------>NtERF2 ----------->TGA1<-----------HVH21--------->YAB1 <---
-->MYB46(3)            <-----------GT1<---------MYB52(1)   <---------ALFIN1--------->ANAC58     ----
 
tcataaattcataatggccttcacattaacccgtcgaggcccttcggtggagtgacgtagtcccacacgtcacctttaacgcaaaaataagaaatccata  13006100
        <---------------AGL15
        --------->TOE2(3)
        --------------->AGL15
        --------->TOE1(3)
       ----------------->AGL2
 --------->ZAT6
----->ANAC58
----->ANAC46
----->ANAC55(2)                  <-----------HVH21                                    --------->ATHB12
----->ANAC55(1)                 <-----------RAV1(1)                                  <-------TEIL
------ANAC55(2)        <----------DOF2                                         <-------TEIL
----->ANAC58  --------->YAB1  <---------ICU4    <-----------GT1         <---------MYB52(1)
 
cgtaacacaaaccctaattagaaatacttttgatcatgtcgcatgctctaatttccattttgacaaaataactccgtttagtttcatattcattagagaa  13006200
                                                                                                   <
                                                                                                   <
                                                                                                   <
                                                                                                  <x
                                                                                                 <xx
                                                                                                 <xx
                                                                                                 <xx
                                                                                                 <xx
                                                                                                 <xx
                                                                                                 <xx
                                                                                                ----
                                                                                                ----
                                                                                                <xxx
                                                                                                ----
                                                                                                <xxx
                                                                                                <xxx
                                                                                                <xxx
                                                                                                <xxx
                                                                                               -----
                                                                                               <xxxx
                                                                                               <xxxx
                                                      <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)         <xxxx
                                                   <xxxxxxxxxxxxxxxxsmallRNA(s)               <-----
                                                   <---------PCF2                             ------
                                                  <xxxxxxxxxxxxxxxxsmallRNA(i)                <xxxxx
                                                  <xxxxxxxxxxxxxxxxsmallRNA(s)                <xxxxx
                                                 <xxxxxxxxxxxxxxxxsmallRNA(s)                 <xxxxx
                                                <---------MYB52(1)                           <xxxxxx
                                                --------->ALFIN1                           <xxxxxxxx
                                          --------->DEAR3(1)   --------->MYB46(3)          <xxxxxxxx
                         --------->AHL20(1)    <xxxxxxxxxxxxxxxxxxxsmallRNA(s2)            <xxxxxxxx
                      --------->YAB1      --------->MYB46(3)   --------->ANAC58            <xxxxxxxx
             --------------->AtSPL8    --------->ANAC58        --------->ANAC58            <xxxxxxxx
             <---------------AtSPL8    --------->ANAC46     --------->TOE1(2)            <----------DOF2
        --------->bZIP60(1)            --------->ANAC58   --------->PCF2----------->GT1--------->ZAT18
        <---------TGA2(1)--------->AHL20(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       <---------ZAT18
        --------->TGA2(1)<---------AHL20(2)<---------ALFIN1--------->DEAR3(2)     <---------ANAC58<x
        <---------bZIP60(1)  ----------->GT1 <xxxxxxxxxxxxxxxxxxxxsmallRNA(l2)    <---------ANAC58<x
 
tgggcttactgacatcatggtacaaaaataaaatgtaatttcacgcccaccgtggggctcgaacccacgaccagaaggttaagagccttgcgctctacca  13006300
<xxxxxxxxxxxxxxxsmallRNA(le3)
<xxxxxxxxxxxxxxxsmallRNA(fl3)
xxxxxxxxxxxxxxxxsmallRNA(s)
xxxxxxxxxxxxxxxxsmallRNA(i)
xxxxxxxxxxxxxxxxsmallRNA(se3)
xxxxxxxxxxxxxxxxsmallRNA(se3)
xxxxxxxxxxxxxxsmallRNA(i)
xxxxxxxxxxxxxxsmallRNA(s)
xxxxxxxxxxxxxxxxsmallRNA(fl3)
xxxxxxxxxxxxxxxxsmallRNA(se3)
xxxxxxxxxxxxxxxxsmallRNA(si3)
xxxxxxxxxxxxxxxsmallRNA(se3)
------->RAV1(2)
-->MYB83   <---------ANAC58
xxxxxxxxxxxxxsmallRNA(s)
-->MYB46(1)<---------ANAC58
xxxxxxxxxxxxxxxxsmallRNA(se3)
xxxxxxxxxxxxxxxxsmallRNA(le3)
xxxxxxxxxxxxxxxxsmallRNA(fl3)
xxxxxxxxxxxxxxxxsmallRNA(si3)
---->MYB52(1)   ----------->GT1
xxxxxxxxxxxxxxxxsmallRNA(se3)
xxxxxxxxxxxxxxxxsmallRNA(si3)
xxxxxxxxxxxxxxxxsmallRNA(fl3)
----MYB111(1)  *TSS
--->MYB46(3)<----------DOF2--------->HSFB2a(2)
xxxxxxxxxxxxxxxxsmallRNA(se3)
xxxxxxxxxxxxxxxxsmallRNA(si3)
xxxxxxxxxxxxxxxxsmallRNA(fl3)
xxxxxxxxxxxxxxxxsmallRNA(l2)            --------->AHL20(2)
xxxxxxxxxxxxxxxxsmallRNA(s2)            <---------AHL20(2)
xxxxxxxxxxxxxxxxsmallRNA(fl3)         ----------->TBP
xxxxxxxxxxxxxxxxsmallRNA(le3)<---------At4g35610
xxxxxxxxxxxxxxxxsmallRNA(se3)--------->ZAT2    ----------->GT1                    <---------ZAT6
xxxxxxxxxxxxxxxxsmallRNA(si3)--------->At4g35610                                  ----------->GT1 --
xxxxxxxxxxxxxxxxsmallRNA(fl3)<---------ZAT2 <---------AHL20(2)--------->O2     --------->DAG2   ----
xxxxxxxxxxxxxxxsmallRNA(s) <---------HSFB2a(2)<---------TOE2(3)               ---------->DOF2  -----
 
actgagctagacgggcttgttgttaattttccagcagaactatataaataatgtaaactatccccatgtctcatcttgagtaaaagtgttaaacattcaa  13006400
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AGI:  At4g25434.1   
Description:  ATNUDT10 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 10); catalytic. Identical to Nudix hydrolase 10 (NUDT10) [Arabidopsis Thaliana] (GB:Q6NPD7;GB:O65616); similar to ATNUDT2 (Arabidopsis thaliana Nudix hydrolase homolog 2), ADP-ribose diphosphatase/ NAD binding / hydrolase [Arabidopsis thaliana] (TAIR:AT5G47650.1); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96281.1); contains InterPro domain Anti-sense to fibroblast growth factor protein GFG (InterPro:IPR003293); contains InterPro domain NUDIX hydrolase, core; (InterPro:IPR000086); contains InterPro domain NUDIX; (InterPro:IPR015797)
Range:  from: 13004007    to: 13005873    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At4g25435.1   
Description:  pre-tRNA. tRNA-Lys (anticodon: CTT)
Range:  from: 13006244    to: 13006316    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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